G-patch domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09850 |
| fragaria_vesca | FvH4_1g01590 |
| malus_domestica | MD02G1012700.v1.1 MD15G1158500.v1.1 |
| prunus_persica | Prupe.7G253700_v2.0.a1 Prupe.7G253700_v2.0.a1 |
| pyrus_communis | pycom02g01190 pycom15g14220 |
| rosa_chinensis | RchiOBHm_Chr2g0086551 |
| rosa_laevigata | RLG00000015766 |
| rosa_multiflora | Rmu_sc0008445.1_g000002 Rmu_ssc0000449.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00154450 |
| rosa_rugosa | Rorug01G0467800 |
| rosa_samantha | Rh2AG018800 Rh2BG018400 Rh2CG019300 Rh2DG020100 |
| rosa_wichuraiana | Rw2G001580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 288 |
| AccB1I | GGYRCC | 2 cut(s) | 288, 1663 |
| AciI | CCGC | 6 cut(s) | 132, 1041, 1510, 1920, 2045, 2181 |
| AclI | AACGTT | 1 cut(s) | 1502 |
| AclWI | GGATC | 8 cut(s) | 610, 847, 1160, 1173, 1486, 1969, 2233, 2263 |
| AcoI | YGGCCR | 3 cut(s) | 3, 106, 2268 |
| AcsI | RAATTY | 5 cut(s) | 408, 458, 703, 1173, 1351 |
| AcuI | CTGAAG | 8 cut(s) | 290, 423, 546, 687, 882, 1037, 1209, 1481 |
| AcyI | GRCGYC | 1 cut(s) | 788 |
| AfaI | GTAC | 4 cut(s) | 290, 740, 1267, 1944 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 173, 337, 549, 550, 2277 |
| AflIII | ACRYGT | 1 cut(s) | 591 |
| AgeI | ACCGGT | 1 cut(s) | 285 |
| AjnI | CCWGG | 6 cut(s) | 823, 1261, 1428, 2119, 2270, 2357 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1551, 1583 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 172, 204 |
| AluBI | AGCT | 7 cut(s) | 233, 416, 437, 501, 560, 1574, 1893 |
| AluI | AGCT | 7 cut(s) | 233, 416, 437, 501, 560, 1574, 1893 |
| Alw21I | GWGCWC | 2 cut(s) | 1010, 2177 |
| Alw26I | GTCTC | 6 cut(s) | 258, 398, 1016, 1305, 1611, 1711 |
| AlwI | GGATC | 8 cut(s) | 610, 847, 1160, 1173, 1486, 1969, 2233, 2263 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 236 |
| Ama87I | CYCGRG | 1 cut(s) | 1416 |
| AoxI | GGCC | 5 cut(s) | 3, 106, 829, 1220, 2268 |
| ApeKI | GCWGC | 6 cut(s) | 72, 75, 230, 1321, 1445, 2336 |
| ApoI | RAATTY | 5 cut(s) | 408, 458, 703, 1173, 1351 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 581, 613 |
| AsiGI | ACCGGT | 1 cut(s) | 285 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1177 |
| Asp718I | GGTACC | 1 cut(s) | 288 |
| AspLEI | GCGC | 1 cut(s) | 1326 |
| AspS9I | GGNCC | 1 cut(s) | 2047 |
| AsuC2I | CCSGG | 2 cut(s) | 1417, 1418 |
| AsuHPI | GGTGA | 4 cut(s) | 353, 506, 665, 697 |
| AvaI | CYCGRG | 1 cut(s) | 1416 |
| AvaII | GGWCC | 1 cut(s) | 2047 |
| BalI | TGGCCA | 1 cut(s) | 2270 |
| BamHI | GGATCC | 1 cut(s) | 1165 |
| BanI | GGYRCC | 2 cut(s) | 288, 1663 |
| BanII | GRGCYC | 2 cut(s) | 377, 2037 |
| BbsI | GAAGAC | 5 cut(s) | 40, 594, 603, 684, 807 |
| Bbv12I | GWGCWC | 2 cut(s) | 1010, 2177 |
| BbvI | GCAGC | 6 cut(s) | 84, 87, 242, 1308, 1457, 2323 |
| BccI | CCATC | 5 cut(s) | 650, 1540, 1975, 2260, 2269 |
| BciT130I | CCWGG | 6 cut(s) | 825, 1263, 1430, 2121, 2272, 2359 |
| BciVI | GTATCC | 1 cut(s) | 275 |
| BcnI | CCSGG | 2 cut(s) | 1417, 1418 |
| BcoDI | GTCTC | 6 cut(s) | 258, 398, 1016, 1305, 1611, 1711 |
| BfaI | CTAG | 3 cut(s) | 63, 1065, 1203 |
| BfmI | CTRYAG | 3 cut(s) | 276, 1140, 2337 |
| BfuI | GTATCC | 1 cut(s) | 275 |
| BglII | AGATCT | 1 cut(s) | 670 |
| BisI | GCNGC | 6 cut(s) | 73, 76, 231, 1322, 1446, 2337 |
| BlsI | GCNGC | 6 cut(s) | 74, 77, 232, 1323, 1447, 2338 |
| Bme1390I | CCNGG | 8 cut(s) | 825, 1263, 1417, 1418, 1430, 2121, 2272, 2359 |
| Bme18I | GGWCC | 1 cut(s) | 2047 |
| BmeT110I | CYCGRG | 1 cut(s) | 1416 |
| BmgT120I | GGNCC | 1 cut(s) | 2047 |
| BmiI | GGNNCC | 5 cut(s) | 290, 1167, 1665, 1918, 2034 |
| BmrFI | CCNGG | 8 cut(s) | 825, 1263, 1417, 1418, 1430, 2121, 2272, 2359 |
| BmrI | ACTGGG | 2 cut(s) | 524, 2186 |
| BmsI | GCATC | 5 cut(s) | 613, 1497, 1797, 1856, 1897 |
| BmuI | ACTGGG | 2 cut(s) | 524, 2186 |
| BpiI | GAAGAC | 5 cut(s) | 40, 594, 603, 684, 807 |
| BpmI | CTGGAG | 1 cut(s) | 1635 |
| BpuEI | CTTGAG | 4 cut(s) | 432, 554, 729, 1361 |
| BpuMI | CCSGG | 2 cut(s) | 1417, 1418 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2254 |
| BsaHI | GRCGYC | 1 cut(s) | 788 |
| BsaI | GGTCTC | 3 cut(s) | 258, 398, 1711 |
| BsaJI | CCNNGG | 8 cut(s) | 109, 1327, 1416, 1428, 1474, 1950, 2119, 2358 |
| BsaWI | WCCGGW | 1 cut(s) | 285 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 173, 337, 549, 550, 2277 |
| Bse118I | RCCGGY | 2 cut(s) | 5, 285 |
| Bse1I | ACTGG | 5 cut(s) | 519, 1618, 1657, 1781, 2192 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2254 |
| BseBI | CCWGG | 6 cut(s) | 825, 1263, 1430, 2121, 2272, 2359 |
| BseDI | CCNNGG | 8 cut(s) | 109, 1327, 1416, 1428, 1474, 1950, 2119, 2358 |
| BseGI | GGATG | 6 cut(s) | 628, 985, 1402, 1591, 1912, 2280 |
| BseJI | GATNNNNATC | 1 cut(s) | 2254 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 173, 337, 549, 550, 2277 |
| BseMII | CTCAG | 8 cut(s) | 409, 606, 810, 1226, 1722, 1812, 1848, 2178 |
| BseNI | ACTGG | 5 cut(s) | 519, 1618, 1657, 1781, 2192 |
| BseRI | GAGGAG | 1 cut(s) | 36 |
| BseXI | GCAGC | 6 cut(s) | 84, 87, 242, 1308, 1457, 2323 |
| BshFI | GGCC | 5 cut(s) | 5, 108, 831, 1222, 2270 |
| BshNI | GGYRCC | 2 cut(s) | 288, 1663 |
| BshTI | ACCGGT | 1 cut(s) | 285 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1010, 2177 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1416 |
| BsiSI | CCGG | 3 cut(s) | 6, 286, 1417 |
| BslFI | GGGAC | 1 cut(s) | 1663 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 173, 337, 549, 550, 2277 |
| BsmAI | GTCTC | 6 cut(s) | 258, 398, 1016, 1305, 1611, 1711 |
| BsmFI | GGGAC | 1 cut(s) | 1663 |
| BsmI | GAATGC | 2 cut(s) | 1323, 1411 |
| BsnI | GGCC | 5 cut(s) | 5, 108, 831, 1222, 2270 |
| Bso31I | GGTCTC | 3 cut(s) | 258, 398, 1711 |
| BsoBI | CYCGRG | 1 cut(s) | 1416 |
| Bsp1286I | GDGCHC | 4 cut(s) | 377, 1010, 2037, 2177 |
| Bsp1407I | TGTACA | 1 cut(s) | 738 |
| BspACI | CCGC | 6 cut(s) | 132, 1041, 1510, 1920, 2045, 2181 |
| BspANI | GGCC | 5 cut(s) | 5, 108, 831, 1222, 2270 |
| BspCNI | CTCAG | 8 cut(s) | 408, 607, 811, 1225, 1721, 1813, 1849, 2177 |
| BspLI | GGNNCC | 5 cut(s) | 290, 1167, 1665, 1918, 2034 |
| BspMAI | CTGCAG | 1 cut(s) | 2341 |
| BspPI | GGATC | 8 cut(s) | 610, 847, 1160, 1173, 1486, 1969, 2233, 2263 |
| BspQI | GCTCTTC | 2 cut(s) | 573, 1056 |
| BspT107I | GGYRCC | 2 cut(s) | 288, 1663 |
| BspTNI | GGTCTC | 3 cut(s) | 258, 398, 1711 |
| BsrFI | RCCGGY | 2 cut(s) | 5, 285 |
| BsrGI | TGTACA | 1 cut(s) | 738 |
| BsrI | ACTGG | 5 cut(s) | 519, 1618, 1657, 1781, 2192 |
| BssAI | RCCGGY | 2 cut(s) | 5, 285 |
| BssECI | CCNNGG | 8 cut(s) | 109, 1327, 1416, 1428, 1474, 1950, 2119, 2358 |
| BssNI | GRCGYC | 1 cut(s) | 788 |
| BssT1I | CCWWGG | 2 cut(s) | 1474, 1950 |
| Bst2UI | CCWGG | 6 cut(s) | 825, 1263, 1430, 2121, 2272, 2359 |
| Bst4CI | ACNGT | 2 cut(s) | 1027, 1870 |
| Bst6I | CTCTTC | 5 cut(s) | 573, 629, 858, 1056, 1457 |
| BstACI | GRCGYC | 1 cut(s) | 788 |
| BstAUI | TGTACA | 1 cut(s) | 738 |
| BstC8I | GCNNGC | 6 cut(s) | 1529, 1576, 1891, 2151, 2177, 2181 |
| BstF5I | GGATG | 6 cut(s) | 628, 985, 1402, 1591, 1912, 2280 |
| BstHHI | GCGC | 1 cut(s) | 1326 |
| BstMAI | GTCTC | 6 cut(s) | 258, 398, 1016, 1305, 1611, 1711 |
| BstNI | CCWGG | 6 cut(s) | 825, 1263, 1430, 2121, 2272, 2359 |
| BstNSI | RCATGY | 2 cut(s) | 595, 1531 |
| BstSCI | CCNGG | 8 cut(s) | 823, 1261, 1415, 1416, 1428, 2119, 2270, 2357 |
| BstSFI | CTRYAG | 3 cut(s) | 276, 1140, 2337 |
| BstV1I | GCAGC | 6 cut(s) | 84, 87, 242, 1308, 1457, 2323 |
| BstV2I | GAAGAC | 5 cut(s) | 40, 594, 603, 684, 807 |
| BstX2I | RGATCY | 4 cut(s) | 670, 1165, 1478, 2225 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 961, 1481 |
| BstYI | RGATCY | 4 cut(s) | 670, 1165, 1478, 2225 |
| BsuI | GTATCC | 1 cut(s) | 275 |
| BsuRI | GGCC | 5 cut(s) | 5, 108, 831, 1222, 2270 |
| BtsCI | GGATG | 6 cut(s) | 628, 985, 1402, 1591, 1912, 2280 |
| BtsI | GCAGTG | 1 cut(s) | 1729 |
| BtsIMutI | CAGTG | 4 cut(s) | 403, 1008, 1729, 1866 |
| Cac8I | GCNNGC | 6 cut(s) | 1529, 1576, 1891, 2151, 2177, 2181 |
| CaiI | CAGNNNCTG | 1 cut(s) | 236 |
| CfoI | GCGC | 1 cut(s) | 1326 |
| Cfr10I | RCCGGY | 2 cut(s) | 5, 285 |
| Cfr13I | GGNCC | 1 cut(s) | 2047 |
| Cfr9I | CCCGGG | 1 cut(s) | 1416 |
| CseI | GACGC | 5 cut(s) | 353, 777, 1295, 1895, 2042 |
| Csp6I | GTAC | 4 cut(s) | 289, 739, 1266, 1943 |
| CspAI | ACCGGT | 1 cut(s) | 285 |
| CviAII | CATG | 4 cut(s) | 419, 592, 1528, 1579 |
| CviQI | GTAC | 4 cut(s) | 289, 739, 1266, 1943 |
| DraI | TTTAAA | 1 cut(s) | 318 |
| EaeI | YGGCCR | 3 cut(s) | 3, 106, 2268 |
| Eam1104I | CTCTTC | 5 cut(s) | 573, 629, 858, 1056, 1457 |
| EarI | CTCTTC | 5 cut(s) | 573, 629, 858, 1056, 1457 |
| EciI | GGCGGA | 1 cut(s) | 1056 |
| Eco130I | CCWWGG | 2 cut(s) | 1474, 1950 |
| Eco147I | AGGCCT | 1 cut(s) | 831 |
| Eco24I | GRGCYC | 2 cut(s) | 377, 2037 |
| Eco31I | GGTCTC | 3 cut(s) | 258, 398, 1711 |
| Eco47I | GGWCC | 1 cut(s) | 2047 |
| Eco57I | CTGAAG | 8 cut(s) | 290, 423, 546, 687, 882, 1037, 1209, 1481 |
| Eco88I | CYCGRG | 1 cut(s) | 1416 |
| EcoRI | GAATTC | 1 cut(s) | 1173 |
| EcoRII | CCWGG | 6 cut(s) | 823, 1261, 1428, 2119, 2270, 2357 |
| EcoT14I | CCWWGG | 2 cut(s) | 1474, 1950 |
| EcoT22I | ATGCAT | 1 cut(s) | 1413 |
| EcoT38I | GRGCYC | 2 cut(s) | 377, 2037 |
| ErhI | CCWWGG | 2 cut(s) | 1474, 1950 |
| FaeI | CATG | 4 cut(s) | 422, 595, 1531, 1582 |
| FaqI | GGGAC | 1 cut(s) | 1663 |
| FatI | CATG | 4 cut(s) | 418, 591, 1527, 1578 |
| FauI | CCCGC | 1 cut(s) | 2188 |
| Fnu4HI | GCNGC | 6 cut(s) | 73, 76, 231, 1322, 1446, 2337 |
| FokI | GGATG | 6 cut(s) | 635, 992, 1389, 1598, 1919, 2287 |
| FriOI | GRGCYC | 2 cut(s) | 377, 2037 |
| Fsp4HI | GCNGC | 6 cut(s) | 73, 76, 231, 1322, 1446, 2337 |
| FspBI | CTAG | 3 cut(s) | 63, 1065, 1203 |
| GlaI | GCGC | 1 cut(s) | 1325 |
| GluI | GCNGC | 6 cut(s) | 73, 76, 231, 1322, 1446, 2337 |
| GsuI | CTGGAG | 1 cut(s) | 1635 |
| HaeIII | GGCC | 5 cut(s) | 5, 108, 831, 1222, 2270 |
| HapII | CCGG | 3 cut(s) | 6, 286, 1417 |
| HgaI | GACGC | 5 cut(s) | 353, 777, 1295, 1895, 2042 |
| HhaI | GCGC | 1 cut(s) | 1326 |
| Hin1I | GRCGYC | 1 cut(s) | 788 |
| Hin1II | CATG | 4 cut(s) | 422, 595, 1531, 1582 |
| Hin6I | GCGC | 1 cut(s) | 1324 |
| HinP1I | GCGC | 1 cut(s) | 1324 |
| HincII | GTYRAC | 2 cut(s) | 1336, 2326 |
| HindII | GTYRAC | 2 cut(s) | 1336, 2326 |
| HindIII | AAGCTT | 1 cut(s) | 558 |
| HpaII | CCGG | 3 cut(s) | 6, 286, 1417 |
| HphI | GGTGA | 4 cut(s) | 353, 506, 665, 697 |
| Hpy166II | GTNNAC | 4 cut(s) | 741, 1336, 1945, 2326 |
| Hpy188III | TCNNGA | 9 cut(s) | 255, 308, 449, 746, 1055, 1251, 1310, 1556, 2110 |
| Hpy8I | GTNNAC | 4 cut(s) | 741, 1336, 1945, 2326 |
| Hpy99I | CGWCG | 1 cut(s) | 1311 |
| HpyAV | CCTTC | 8 cut(s) | 303, 613, 794, 1233, 1654, 1988, 2282, 2299 |
| HpyCH4III | ACNGT | 2 cut(s) | 1027, 1870 |
| HpyCH4IV | ACGT | 2 cut(s) | 1502, 1717 |
| HpySE526I | ACGT | 2 cut(s) | 1502, 1717 |
| Hsp92I | GRCGYC | 1 cut(s) | 788 |
| Hsp92II | CATG | 4 cut(s) | 422, 595, 1531, 1582 |
| HspAI | GCGC | 1 cut(s) | 1324 |
| KpnI | GGTACC | 1 cut(s) | 292 |
| LguI | GCTCTTC | 2 cut(s) | 573, 1056 |
| LmnI | GCTCC | 4 cut(s) | 1239, 1571, 1922, 2032 |
| Lsp1109I | GCAGC | 6 cut(s) | 84, 87, 242, 1308, 1457, 2323 |
| LweI | GCATC | 5 cut(s) | 613, 1497, 1797, 1856, 1897 |
| MaeI | CTAG | 3 cut(s) | 63, 1065, 1203 |
| MaeII | ACGT | 2 cut(s) | 1502, 1717 |
| MaeIII | GTNAC | 6 cut(s) | 58, 341, 935, 1111, 1198, 1498 |
| MfeI | CAATTG | 1 cut(s) | 974 |
| MflI | RGATCY | 4 cut(s) | 670, 1165, 1478, 2225 |
| MhlI | GDGCHC | 4 cut(s) | 377, 1010, 2037, 2177 |
| MlsI | TGGCCA | 1 cut(s) | 2270 |
| MluNI | TGGCCA | 1 cut(s) | 2270 |
| MlyI | GAGTC | 2 cut(s) | 377, 821 |
| MmeI | TCCRAC | 3 cut(s) | 852, 2010, 2112 |
| Mox20I | TGGCCA | 1 cut(s) | 2270 |
| Mph1103I | ATGCAT | 1 cut(s) | 1413 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1177 |
| MscI | TGGCCA | 1 cut(s) | 2270 |
| MseI | TTAA | 3 cut(s) | 317, 336, 2374 |
| Msp20I | TGGCCA | 1 cut(s) | 2270 |
| MspA1I | CMGCKG | 1 cut(s) | 1922 |
| MspI | CCGG | 3 cut(s) | 6, 286, 1417 |
| MspR9I | CCNGG | 8 cut(s) | 825, 1263, 1417, 1418, 1430, 2121, 2272, 2359 |
| MssI | GTTTAAAC | 1 cut(s) | 318 |
| MunI | CAATTG | 1 cut(s) | 974 |
| Mva1269I | GAATGC | 2 cut(s) | 1323, 1411 |
| MvaI | CCWGG | 6 cut(s) | 825, 1263, 1430, 2121, 2272, 2359 |
| NciI | CCSGG | 2 cut(s) | 1417, 1418 |
| NlaIII | CATG | 4 cut(s) | 422, 595, 1531, 1582 |
| NlaIV | GGNNCC | 5 cut(s) | 290, 1167, 1665, 1918, 2034 |
| NmeAIII | GCCGAG | 3 cut(s) | 134, 1108, 1352 |
| NmuCI | GTSAC | 4 cut(s) | 341, 935, 1111, 1198 |
| NsiI | ATGCAT | 1 cut(s) | 1413 |
| NspI | RCATGY | 2 cut(s) | 595, 1531 |
| PaeI | GCATGC | 1 cut(s) | 1531 |
| PceI | AGGCCT | 1 cut(s) | 831 |
| PciI | ACATGT | 1 cut(s) | 591 |
| PciSI | GCTCTTC | 2 cut(s) | 573, 1056 |
| PctI | GAATGC | 2 cut(s) | 1323, 1411 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1177 |
| PfeI | GAWTC | 8 cut(s) | 181, 857, 1638, 1670, 1763, 1838, 1874, 2309 |
| PinAI | ACCGGT | 1 cut(s) | 285 |
| PkrI | GCNGC | 6 cut(s) | 74, 77, 232, 1323, 1447, 2338 |
| PleI | GAGTC | 2 cut(s) | 376, 820 |
| PmeI | GTTTAAAC | 1 cut(s) | 318 |
| PpsI | GAGTC | 2 cut(s) | 376, 820 |
| PscI | ACATGT | 1 cut(s) | 591 |
| Psp1406I | AACGTT | 1 cut(s) | 1502 |
| Psp6I | CCWGG | 6 cut(s) | 823, 1261, 1428, 2119, 2270, 2357 |
| PspGI | CCWGG | 6 cut(s) | 823, 1261, 1428, 2119, 2270, 2357 |
| PspN4I | GGNNCC | 5 cut(s) | 290, 1167, 1665, 1918, 2034 |
| PspPI | GGNCC | 1 cut(s) | 2047 |
| PstI | CTGCAG | 1 cut(s) | 2341 |
| PstNI | CAGNNNCTG | 1 cut(s) | 236 |
| PsuI | RGATCY | 4 cut(s) | 670, 1165, 1478, 2225 |
| RsaI | GTAC | 4 cut(s) | 290, 740, 1267, 1944 |
| RsaNI | GTAC | 4 cut(s) | 289, 739, 1266, 1943 |
| SapI | GCTCTTC | 2 cut(s) | 573, 1056 |
| SaqAI | TTAA | 3 cut(s) | 317, 336, 2374 |
| SatI | GCNGC | 6 cut(s) | 73, 76, 231, 1322, 1446, 2337 |
| Sau96I | GGNCC | 1 cut(s) | 2047 |
| SchI | GAGTC | 2 cut(s) | 377, 821 |
| ScrFI | CCNGG | 8 cut(s) | 825, 1263, 1417, 1418, 1430, 2121, 2272, 2359 |
| SduI | GDGCHC | 4 cut(s) | 377, 1010, 2037, 2177 |
| SfaNI | GCATC | 5 cut(s) | 613, 1497, 1797, 1856, 1897 |
| SfcI | CTRYAG | 3 cut(s) | 276, 1140, 2337 |
| SinI | GGWCC | 1 cut(s) | 2047 |
| SmaI | CCCGGG | 1 cut(s) | 1418 |
| SmlI | CTYRAG | 4 cut(s) | 447, 533, 744, 1340 |
| SmoI | CTYRAG | 4 cut(s) | 447, 533, 744, 1340 |
| SphI | GCATGC | 1 cut(s) | 1531 |
| SseBI | AGGCCT | 1 cut(s) | 831 |
| SsiI | CCGC | 6 cut(s) | 132, 1041, 1510, 1920, 2045, 2181 |
| SspI | AATATT | 2 cut(s) | 1247, 1258 |
| SspMI | CTAG | 3 cut(s) | 63, 1065, 1203 |
| StuI | AGGCCT | 1 cut(s) | 831 |
| StyD4I | CCNGG | 8 cut(s) | 823, 1261, 1415, 1416, 1428, 2119, 2270, 2357 |
| StyI | CCWWGG | 2 cut(s) | 1474, 1950 |
| TaaI | ACNGT | 2 cut(s) | 1027, 1870 |
| TaiI | ACGT | 2 cut(s) | 1505, 1720 |
| TaqI | TCGA | 8 cut(s) | 126, 212, 256, 263, 323, 371, 1004, 1309 |
| TatI | WGTACW | 1 cut(s) | 738 |
| TfiI | GAWTC | 8 cut(s) | 181, 857, 1638, 1670, 1763, 1838, 1874, 2309 |
| Tru1I | TTAA | 3 cut(s) | 317, 336, 2374 |
| Tru9I | TTAA | 3 cut(s) | 317, 336, 2374 |
| TscAI | CASTG | 4 cut(s) | 403, 1015, 1729, 1873 |
| TseFI | GTSAC | 4 cut(s) | 341, 935, 1111, 1198 |
| TseI | GCWGC | 6 cut(s) | 72, 75, 230, 1321, 1445, 2336 |
| Tsp45I | GTSAC | 4 cut(s) | 341, 935, 1111, 1198 |
| TspDTI | ATGAA | 7 cut(s) | 660, 714, 774, 792, 813, 1391, 1755 |
| TspGWI | ACGGA | 4 cut(s) | 320, 1541, 1919, 2031 |
| TspMI | CCCGGG | 1 cut(s) | 1416 |
| TspRI | CASTG | 4 cut(s) | 403, 1015, 1729, 1873 |
| VpaK11BI | GGWCC | 1 cut(s) | 2047 |
| XapI | RAATTY | 5 cut(s) | 408, 458, 703, 1173, 1351 |
| XceI | RCATGY | 2 cut(s) | 595, 1531 |
| XmaI | CCCGGG | 1 cut(s) | 1416 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1177 |
| XspI | CTAG | 3 cut(s) | 63, 1065, 1203 |
| Zsp2I | ATGCAT | 1 cut(s) | 1413 |