Rh2DG020100

G-patch domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012311
Physical Location & Seq
Reverse (-)
1168404 .. 1173440
5037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG020100.1

Sequence Viewer

Length: 1491 bp
ATGGCCGGTGGAAGAAAACGAGGAGGAAGAAGAAGACCCAACAACAACAACAACACAAACGAGGTTACTAGGAACAGCAGCAGAAGAAGACCATCGTCCAGATCCTCTGGCCGAGGTGGTCTGTTTGTCGAGGGCGGTCTTTTGTCTGATTGGTCTTTACCTCAAACCCCAATCACAGGGAGGAATCCAAGTTCTAAAAACAACAAATCTGGGTCGAAATCTGGAGGGAAAGCAGCTTCTGATAGTAAAAGTGGGTCTCGAAAATCGAATGTCAATGCTGTAGGATACCGGTACCCTTCTGTTGAACTTCAGGAGGGTTTAAACTCGAAGTTCCGTGTTAAGGGTAACGCTGACAATGACAATATGGACGAGTCGAGCCCTATGGTTTTAGTTGGTCTCAGTGATACCCACATTTCAGCTCATGCAGACCAGACACCAGCTTCAGAACCTCAAGATGTGAAATTTACTTATCACTATGGTTCAAGTTTTGTGTTGGGTGAAAGCTCTTATAGAGGACTGGGGTTCTCTGAAGAACTTGAGGAAACCCCAAGTGGGGTTGAAGCTTCCTCAAAAGAAATGGAAGAGCCAGAAGACATGTATTTTGGATCGTTGTCTTCTGAGAAGGATGCCAACGGGAAGAGTGATTATGAAGTTGGTGATGGTATGGCCGAAGATCTGCCAACAGAGGTGATGTCTTCTGATGAAAATTCAGGTTTTCTGTCATTTGGAGGCATTAGATTGTACACTCAAGATATATCTGATGAAGAAAGTGAGGAAGATGAAAATGGGGTGTCATTGTATGAAGGAAACTCGGAGTCTTCTGAGCCAGGAGGCCTACTTGGATCATCTGAAAGTGGAGATTCTGAAGAGATGTCGGATAGTGATTTAGATATTGATGACGAGGTTGCAGAAGATTATTTAGAGGGAATTGGTGGGAGAGACAACATTTTACGTTCCAAATGGTTGGTAGGACAGCAATTGGATGTGTCTGATACAGATAGTTCTTCGAGCACTGACTTTGATGAGACTGTTGAGAAGTTGGGCGGAATTGCTCTTCAGGAGGTGTCTAGGGAATATGGTAAGAGAAATGCCCGTTCACAAAAGAAACCCAATGTGACTGAAAGATATGCTCGGCATTTGGCTATAGATGACCTAATGCTTGTAAAGGATCCCAGAATTCGTTCTGCAAAAAAGAAGCCTGTCACTAGGTTTCCTCAGTCTTGGCCTTCAGAGGCTCAAAGGAGCAAATATTCAAGAAATATTCCTGGTACTAAGAAAAAACATCGTAAAGAAATGATTGTTGCAAAGCGTCGAGACAGAATGCTGCGCCGAGGTGTTGACCTTGAGCAAATAAATTTGAAATTAGAGCAGATTGTCTTGGGTGGAGTGGATATGTTTTCTTTTCATCCTATGCATTCCCGGGATTGTTCCCAGGTACGGATTTTTGATCTATCACTTTGGTTTACAGTTTGTTATTTCTTTTGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch R3H

Protein Analysis

496

Amino Acids

54.91

Weight (kDa)

5.16

Isoelectric Point (pI)

62.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09850
fragaria_vesca FvH4_1g01590
malus_domestica MD02G1012700.v1.1 MD15G1158500.v1.1
prunus_persica Prupe.7G253700_v2.0.a1 Prupe.7G253700_v2.0.a1
pyrus_communis pycom02g01190 pycom15g14220
rosa_chinensis RchiOBHm_Chr2g0086551
rosa_laevigata RLG00000015766
rosa_multiflora Rmu_sc0008445.1_g000002 Rmu_ssc0000449.1_g000001
rosa_roxburghii Rroxscaffold_2G00154450
rosa_rugosa Rorug01G0467800
rosa_samantha Rh2AG018800 Rh2BG018400 Rh2CG019300 Rh2DG020100
rosa_wichuraiana Rw2G001580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 291
AciI CCGC 2 cut(s) 135, 1044
AclWI GGATC 5 cut(s) 96, 613, 850, 1163, 1176
AcoI YGGCCR 3 cut(s) 3, 109, 666
AcsI RAATTY 4 cut(s) 461, 706, 1176, 1354
AcuI CTGAAG 6 cut(s) 293, 426, 549, 885, 1040, 1212
AfaI GTAC 4 cut(s) 293, 743, 1270, 1437
AfiI CCNNNNNNNGG 5 cut(s) 176, 340, 552, 553, 1437
AflIII ACRYGT 1 cut(s) 594
AgeI ACCGGT 1 cut(s) 288
AgsI TTSAA 5 cut(s) 305, 483, 560, 1254, 1360
AjnI CCWGG 3 cut(s) 826, 1264, 1431
AloI GAACNNNNNNTCC 2 cut(s) 175, 207
AluBI AGCT 5 cut(s) 236, 419, 440, 504, 563
AluI AGCT 5 cut(s) 236, 419, 440, 504, 563
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 5 cut(s) 261, 401, 933, 1019, 1308
AlwI GGATC 5 cut(s) 96, 613, 850, 1163, 1176
AlwNI CAGNNNCTG 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 1419
AoxI GGCC 5 cut(s) 3, 109, 666, 832, 1223
ApeKI GCWGC 3 cut(s) 78, 233, 1324
ApoI RAATTY 4 cut(s) 461, 706, 1176, 1354
ArsI GACNNNNNNTTYG 2 cut(s) 584, 616
AsiGI ACCGGT 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 1180
Asp718I GGTACC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 1329
AsuC2I CCSGG 2 cut(s) 1420, 1421
AsuHPI GGTGA 3 cut(s) 509, 668, 700
AvaI CYCGRG 1 cut(s) 1419
BamHI GGATCC 1 cut(s) 1168
BanI GGYRCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 380
BbsI GAAGAC 6 cut(s) 40, 94, 597, 606, 687, 810
Bbv12I GWGCWC 1 cut(s) 1013
BbvI GCAGC 3 cut(s) 90, 245, 1311
BccI CCATC 2 cut(s) 100, 653
BciT130I CCWGG 3 cut(s) 828, 1266, 1433
BciVI GTATCC 1 cut(s) 278
BcnI CCSGG 2 cut(s) 1420, 1421
BcoDI GTCTC 5 cut(s) 261, 401, 933, 1019, 1308
BfaI CTAG 3 cut(s) 69, 1068, 1206
BfmI CTRYAG 2 cut(s) 279, 1143
BfuI GTATCC 1 cut(s) 278
BglII AGATCT 1 cut(s) 673
BisI GCNGC 3 cut(s) 79, 234, 1325
BlsI GCNGC 3 cut(s) 80, 235, 1326
Bme1390I CCNGG 5 cut(s) 828, 1266, 1420, 1421, 1433
BmeT110I CYCGRG 1 cut(s) 1419
BmiI GGNNCC 2 cut(s) 293, 1170
BmrFI CCNGG 5 cut(s) 828, 1266, 1420, 1421, 1433
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 616
BmuI ACTGGG 1 cut(s) 527
BoxI GACNNNNGTC 1 cut(s) 94
BpiI GAAGAC 6 cut(s) 40, 94, 597, 606, 687, 810
BpmI CTGGAG 1 cut(s) 243
BpuEI CTTGAG 4 cut(s) 435, 557, 732, 1364
BpuMI CCSGG 2 cut(s) 1420, 1421
BsaI GGTCTC 2 cut(s) 261, 401
BsaJI CCNNGG 4 cut(s) 112, 1330, 1419, 1431
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 340, 552, 553, 1437
Bse118I RCCGGY 2 cut(s) 5, 288
Bse1I ACTGG 1 cut(s) 522
BseBI CCWGG 3 cut(s) 828, 1266, 1433
BseDI CCNNGG 4 cut(s) 112, 1330, 1419, 1431
BseGI GGATG 3 cut(s) 631, 988, 1405
BseLI CCNNNNNNNGG 5 cut(s) 176, 340, 552, 553, 1437
BseMII CTCAG 4 cut(s) 412, 609, 813, 1229
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 90, 245, 1311
BshFI GGCC 5 cut(s) 5, 111, 668, 834, 1225
BshNI GGYRCC 1 cut(s) 291
BshTI ACCGGT 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 1013
BsiHKCI CYCGRG 1 cut(s) 1419
BsiSI CCGG 3 cut(s) 6, 289, 1420
BslI CCNNNNNNNGG 5 cut(s) 176, 340, 552, 553, 1437
BsmAI GTCTC 5 cut(s) 261, 401, 933, 1019, 1308
BsmI GAATGC 2 cut(s) 1326, 1414
BsnI GGCC 5 cut(s) 5, 111, 668, 834, 1225
Bso31I GGTCTC 2 cut(s) 261, 401
BsoBI CYCGRG 1 cut(s) 1419
Bsp1286I GDGCHC 2 cut(s) 380, 1013
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 6 cut(s) 101, 605, 673, 842, 1168, 1447
BspACI CCGC 2 cut(s) 135, 1044
BspANI GGCC 5 cut(s) 5, 111, 668, 834, 1225
BspCNI CTCAG 4 cut(s) 411, 610, 814, 1228
BspLI GGNNCC 2 cut(s) 293, 1170
BspPI GGATC 5 cut(s) 96, 613, 850, 1163, 1176
BspQI GCTCTTC 2 cut(s) 576, 1059
BspT107I GGYRCC 1 cut(s) 291
BspTNI GGTCTC 2 cut(s) 261, 401
BsrFI RCCGGY 2 cut(s) 5, 288
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 1 cut(s) 522
BssAI RCCGGY 2 cut(s) 5, 288
BssECI CCNNGG 4 cut(s) 112, 1330, 1419, 1431
BssMI GATC 6 cut(s) 101, 605, 673, 842, 1168, 1447
Bst2UI CCWGG 3 cut(s) 828, 1266, 1433
Bst4CI ACNGT 2 cut(s) 1030, 1468
Bst6I CTCTTC 4 cut(s) 576, 632, 861, 1059
BstAUI TGTACA 1 cut(s) 741
BstDEI CTNAG 5 cut(s) 398, 618, 822, 1215, 1272
BstF5I GGATG 3 cut(s) 631, 988, 1405
BstHHI GCGC 1 cut(s) 1329
BstKTI GATC 6 cut(s) 104, 608, 676, 845, 1171, 1450
BstMAI GTCTC 5 cut(s) 261, 401, 933, 1019, 1308
BstMBI GATC 6 cut(s) 101, 605, 673, 842, 1168, 1447
BstNI CCWGG 3 cut(s) 828, 1266, 1433
BstNSI RCATGY 1 cut(s) 598
BstPAI GACNNNNGTC 1 cut(s) 94
BstSCI CCNGG 5 cut(s) 826, 1264, 1418, 1419, 1431
BstSFI CTRYAG 2 cut(s) 279, 1143
BstV1I GCAGC 3 cut(s) 90, 245, 1311
BstV2I GAAGAC 6 cut(s) 40, 94, 597, 606, 687, 810
BstX2I RGATCY 3 cut(s) 101, 673, 1168
BstXI CCANNNNNNTGG 1 cut(s) 964
BstYI RGATCY 3 cut(s) 101, 673, 1168
BsuI GTATCC 1 cut(s) 278
BsuRI GGCC 5 cut(s) 5, 111, 668, 834, 1225
BtsCI GGATG 3 cut(s) 631, 988, 1405
BtsIMutI CAGTG 2 cut(s) 406, 1011
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 1 cut(s) 1329
Cfr10I RCCGGY 2 cut(s) 5, 288
Cfr9I CCCGGG 1 cut(s) 1419
CseI GACGC 1 cut(s) 1298
Csp6I GTAC 4 cut(s) 292, 742, 1269, 1436
CspAI ACCGGT 1 cut(s) 288
CviAII CATG 2 cut(s) 422, 595
CviQI GTAC 4 cut(s) 292, 742, 1269, 1436
DdeI CTNAG 5 cut(s) 398, 618, 822, 1215, 1272
DpnI GATC 6 cut(s) 103, 607, 675, 844, 1170, 1449
DpnII GATC 6 cut(s) 101, 605, 673, 842, 1168, 1447
DraI TTTAAA 1 cut(s) 321
EaeI YGGCCR 3 cut(s) 3, 109, 666
Eam1104I CTCTTC 4 cut(s) 576, 632, 861, 1059
EarI CTCTTC 4 cut(s) 576, 632, 861, 1059
EciI GGCGGA 1 cut(s) 1059
Eco147I AGGCCT 1 cut(s) 834
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 2 cut(s) 261, 401
Eco57I CTGAAG 6 cut(s) 293, 426, 549, 885, 1040, 1212
Eco88I CYCGRG 1 cut(s) 1419
EcoRI GAATTC 1 cut(s) 1176
EcoRII CCWGG 3 cut(s) 826, 1264, 1431
EcoT22I ATGCAT 1 cut(s) 1416
EcoT38I GRGCYC 1 cut(s) 380
FaeI CATG 2 cut(s) 425, 598
FatI CATG 2 cut(s) 421, 594
Fnu4HI GCNGC 3 cut(s) 79, 234, 1325
FokI GGATG 3 cut(s) 638, 995, 1392
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 3 cut(s) 79, 234, 1325
FspBI CTAG 3 cut(s) 69, 1068, 1206
GlaI GCGC 1 cut(s) 1328
GluI GCNGC 3 cut(s) 79, 234, 1325
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 5 cut(s) 5, 111, 668, 834, 1225
HapII CCGG 3 cut(s) 6, 289, 1420
HgaI GACGC 1 cut(s) 1298
HhaI GCGC 1 cut(s) 1329
Hin1II CATG 2 cut(s) 425, 598
Hin6I GCGC 1 cut(s) 1327
HinP1I GCGC 1 cut(s) 1327
HincII GTYRAC 1 cut(s) 1339
HindII GTYRAC 1 cut(s) 1339
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 4 cut(s) 184, 371, 815, 860
HpaII CCGG 3 cut(s) 6, 289, 1420
HphI GGTGA 3 cut(s) 509, 668, 700
Hpy166II GTNNAC 4 cut(s) 744, 1097, 1339, 1464
Hpy188III TCNNGA 9 cut(s) 99, 222, 258, 311, 452, 749, 1058, 1254, 1313
Hpy8I GTNNAC 4 cut(s) 744, 1097, 1339, 1464
Hpy99I CGWCG 1 cut(s) 1314
HpyAV CCTTC 4 cut(s) 306, 616, 797, 1236
HpyCH4III ACNGT 2 cut(s) 1030, 1468
HpyCH4IV ACGT 1 cut(s) 952
HpyCH4V TGCA 5 cut(s) 425, 908, 1187, 1304, 1414
HpyF3I CTNAG 5 cut(s) 398, 618, 822, 1215, 1272
HpySE526I ACGT 1 cut(s) 952
Hsp92II CATG 2 cut(s) 425, 598
HspAI GCGC 1 cut(s) 1327
KpnI GGTACC 1 cut(s) 295
Kzo9I GATC 6 cut(s) 101, 605, 673, 842, 1168, 1447
LguI GCTCTTC 2 cut(s) 576, 1059
LmnI GCTCC 1 cut(s) 1242
Lsp1109I GCAGC 3 cut(s) 90, 245, 1311
LweI GCATC 1 cut(s) 616
MaeI CTAG 3 cut(s) 69, 1068, 1206
MaeII ACGT 1 cut(s) 952
MaeIII GTNAC 4 cut(s) 64, 344, 1114, 1201
MalI GATC 6 cut(s) 103, 607, 675, 844, 1170, 1449
MboI GATC 6 cut(s) 101, 605, 673, 842, 1168, 1447
MfeI CAATTG 1 cut(s) 977
MflI RGATCY 3 cut(s) 101, 673, 1168
MhlI GDGCHC 2 cut(s) 380, 1013
MluCI AATT 8 cut(s) 461, 706, 927, 977, 1047, 1176, 1354, 1361
MlyI GAGTC 2 cut(s) 380, 824
MmeI TCCRAC 1 cut(s) 855
Mph1103I ATGCAT 1 cut(s) 1416
MroXI GAANNNNTTC 1 cut(s) 1180
MseI TTAA 2 cut(s) 320, 339
MspI CCGG 3 cut(s) 6, 289, 1420
MspR9I CCNGG 5 cut(s) 828, 1266, 1420, 1421, 1433
MssI GTTTAAAC 1 cut(s) 321
MunI CAATTG 1 cut(s) 977
Mva1269I GAATGC 2 cut(s) 1326, 1414
MvaI CCWGG 3 cut(s) 828, 1266, 1433
NciI CCSGG 2 cut(s) 1420, 1421
NdeII GATC 6 cut(s) 101, 605, 673, 842, 1168, 1447
NlaIII CATG 2 cut(s) 425, 598
NlaIV GGNNCC 2 cut(s) 293, 1170
NmeAIII GCCGAG 3 cut(s) 137, 1111, 1355
NmuCI GTSAC 2 cut(s) 1114, 1201
NsiI ATGCAT 1 cut(s) 1416
NspI RCATGY 1 cut(s) 598
PceI AGGCCT 1 cut(s) 834
PciI ACATGT 1 cut(s) 594
PciSI GCTCTTC 2 cut(s) 576, 1059
PctI GAATGC 2 cut(s) 1326, 1414
PdmI GAANNNNTTC 1 cut(s) 1180
PfeI GAWTC 2 cut(s) 184, 860
PinAI ACCGGT 1 cut(s) 288
PkrI GCNGC 3 cut(s) 80, 235, 1326
PleI GAGTC 2 cut(s) 379, 823
PmeI GTTTAAAC 1 cut(s) 321
PpsI GAGTC 2 cut(s) 379, 823
PscI ACATGT 1 cut(s) 594
PshAI GACNNNNGTC 1 cut(s) 94
Psp6I CCWGG 3 cut(s) 826, 1264, 1431
PspGI CCWGG 3 cut(s) 826, 1264, 1431
PspN4I GGNNCC 2 cut(s) 293, 1170
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 3 cut(s) 101, 673, 1168
RsaI GTAC 4 cut(s) 293, 743, 1270, 1437
RsaNI GTAC 4 cut(s) 292, 742, 1269, 1436
SapI GCTCTTC 2 cut(s) 576, 1059
SaqAI TTAA 2 cut(s) 320, 339
SatI GCNGC 3 cut(s) 79, 234, 1325
Sau3AI GATC 6 cut(s) 101, 605, 673, 842, 1168, 1447
SchI GAGTC 2 cut(s) 380, 824
ScrFI CCNGG 5 cut(s) 828, 1266, 1420, 1421, 1433
SduI GDGCHC 2 cut(s) 380, 1013
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 2 cut(s) 279, 1143
SmaI CCCGGG 1 cut(s) 1421
SmlI CTYRAG 4 cut(s) 450, 536, 747, 1343
SmoI CTYRAG 4 cut(s) 450, 536, 747, 1343
Sse9I AATT 8 cut(s) 461, 706, 927, 977, 1047, 1176, 1354, 1361
SseBI AGGCCT 1 cut(s) 834
SsiI CCGC 2 cut(s) 135, 1044
SspI AATATT 2 cut(s) 1250, 1261
SspMI CTAG 3 cut(s) 69, 1068, 1206
StuI AGGCCT 1 cut(s) 834
StyD4I CCNGG 5 cut(s) 826, 1264, 1418, 1419, 1431
TaaI ACNGT 2 cut(s) 1030, 1468
TaiI ACGT 1 cut(s) 955
TaqI TCGA 8 cut(s) 129, 215, 259, 266, 326, 374, 1007, 1312
TasI AATT 8 cut(s) 461, 706, 927, 977, 1047, 1176, 1354, 1361
TatI WGTACW 1 cut(s) 741
TfiI GAWTC 2 cut(s) 184, 860
Tru1I TTAA 2 cut(s) 320, 339
Tru9I TTAA 2 cut(s) 320, 339
TscAI CASTG 2 cut(s) 406, 1018
TseFI GTSAC 2 cut(s) 1114, 1201
TseI GCWGC 3 cut(s) 78, 233, 1324
Tsp45I GTSAC 2 cut(s) 1114, 1201
TspDTI ATGAA 6 cut(s) 663, 717, 777, 795, 816, 1394
TspGWI ACGGA 2 cut(s) 323, 1453
TspMI CCCGGG 1 cut(s) 1419
TspRI CASTG 2 cut(s) 406, 1018
XapI RAATTY 4 cut(s) 461, 706, 1176, 1354
XceI RCATGY 1 cut(s) 598
XmaI CCCGGG 1 cut(s) 1419
XmnI GAANNNNTTC 1 cut(s) 1180
XspI CTAG 3 cut(s) 69, 1068, 1206
Zsp2I ATGCAT 1 cut(s) 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.