Rorug01G0467800

G-patch domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012311
Physical Location & Seq
Reverse (-)
56026090 .. 56027979
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0467800.1

Sequence Viewer

Length: 1356 bp
ATGGCAGCAGCCGAAGCACGGACTGGATGGCAGCATAGAGCGAATTGTTGTTTTGCCCAAGACAATGTGAGGAGTGCTCAAAGATTTGCGCGTCACCCGTCATCGTCTTCCTCAAAAGAATCTGATAGTGCTCCTGAGAATGCTTCATATGGGATTGATCACCTTATCCCAGATTGCATGTCTTATAACTCAAATCCGGAGCTAACACCCAGCACTAGGTGGTGGTTGAACCTGGAACCTAACTTTGGGCCTCAGAAGGAATTTATCTATGATCAGCAAAAGAGCCTGGAAGCTGAACTTGAAGTTTTGAATTCTGGATATATTAATAAAACTGCCATCATAAGTGATTATTATCAGTGCAAGGAGGTATTTAGTACTCAGAGTGATAGTGAGAAGGGTGTCAACAGTTTTGTGGAGAAACCATGCAAGGTTTCAGTCACTTCTCCAAGAAATGACCCGAGTAAGAGAATGCAAGAACTCAAGGCTGGAATTGGTGATGGTCCGCAGCTGCCTAAGAAAAGGGACACAGGGGAGTTTTGGTACTCCGATGATGATTTCATGAACTTGGATTCTTTCAGCAGCTTGGATTCTGAACAAAACAAAAAGCTGTCTCCCGATTTGGATTCCCAATGGGTGGGAAGTGAGAAGTCTGAACCCTGGTGGCGCTCTGCTGGTAAAGATGAGTTGGCTTCCTTGGTTGCTCAGAAATCACTTGAAAATGTTGAGAATTGTGATCTTCCACGGCCCCAGATTAAGCATAGTAGGATGGGTCCTATCGCTTCTACAAAGTTTCCTGGCCCTAATTTGCCCTTAGATCAGATGACTGAACTGGGATTGTCCAATGTCACCACTTATACTCAGGGAAGCTTTACTTCAGGTCACTCAATATATGATTCAGACAGTCCACTAAGCCACAACAATGATCATGCTGCAACCAACCAAGATGAGCCAGACGATGAACGAAGTAAAGCTCAGCTGCTGGAAGCTTTGTGTCATTCTCAAACACGAGCTAGGAAAGCTGAGAAAGCTGCACAGCAGGCCTATACAGAGAAGGAGCATATCATCAGTCTCTTTTTCAAACAGGCATCACAGCTGTTTGCCTACAAGCAGTGGCTCCATTTGCTGCAAATCGAGAACTTTTGCCTGCAGCTTAATAAAAAAGATGGCTTACCATGGTCCCCATACAAAGGCAGGCCCATGAAGAAGAAGGCTCATCGCAGGGCAGGAAAGAGGAGCGGCAGCAGGCCAAGGTATGAGATCAGCAAGGGTGCTGTTGCTTTTGCAGTAGGATTAGGTCTTGCTGGTGCGGGCTTGCTCCTCGGATGGACTATGGGGTGGTTGTTTCCAACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch R3H

Protein Analysis

451

Amino Acids

50.54

Weight (kDa)

6.61

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09850
fragaria_vesca FvH4_1g01590
malus_domestica MD02G1012700.v1.1 MD15G1158500.v1.1
prunus_persica Prupe.7G253700_v2.0.a1 Prupe.7G253700_v2.0.a1
pyrus_communis pycom02g01190 pycom15g14220
rosa_chinensis RchiOBHm_Chr2g0086551
rosa_laevigata RLG00000015766
rosa_multiflora Rmu_sc0008445.1_g000002 Rmu_ssc0000449.1_g000001
rosa_roxburghii Rroxscaffold_2G00154450
rosa_rugosa Rorug01G0467800
rosa_samantha Rh2AG018800 Rh2BG018400 Rh2CG019300 Rh2DG020100
rosa_wichuraiana Rw2G001580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AccB7I CCANNNNNTGG 1 cut(s) 634
AccBSI CCGCTC 1 cut(s) 1236
AccII CGCG 1 cut(s) 91
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 3 cut(s) 503, 1236, 1307
AcsI RAATTY 2 cut(s) 260, 310
AcuI CTGAAG 1 cut(s) 858
AdeI CACNNNGTG 1 cut(s) 219
AfaI GTAC 2 cut(s) 376, 542
AfiI CCNNNNNNNGG 5 cut(s) 18, 216, 245, 634, 1187
AgsI TTSAA 5 cut(s) 229, 302, 310, 716, 1078
AjnI CCWGG 4 cut(s) 231, 285, 656, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
Alw21I GWGCWC 2 cut(s) 79, 133
Alw26I GTCTC 2 cut(s) 615, 1073
AlwNI CAGNNNCTG 1 cut(s) 979
Ama87I CYCGRG 1 cut(s) 457
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 6 cut(s) 248, 743, 796, 1038, 1193, 1244
ApoI RAATTY 2 cut(s) 260, 310
AseI ATTAAT 1 cut(s) 324
AspLEI GCGC 2 cut(s) 91, 666
AspS9I GGNCC 7 cut(s) 248, 500, 744, 770, 797, 1176, 1194
AsuHPI GGTGA 4 cut(s) 86, 152, 506, 838
AvaI CYCGRG 1 cut(s) 457
AvaII GGWCC 3 cut(s) 500, 770, 1176
BauI CACGAG 1 cut(s) 1005
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 79, 133
BccI CCATC 6 cut(s) 21, 344, 491, 760, 1157, 1317
BceAI ACGGC 1 cut(s) 758
BciT130I CCWGG 4 cut(s) 233, 287, 658, 795
BclI TGATCA 3 cut(s) 157, 271, 922
BcoDI GTCTC 2 cut(s) 615, 1073
BfaI CTAG 2 cut(s) 216, 1011
BfmI CTRYAG 1 cut(s) 1145
BfoI RGCGCY 1 cut(s) 667
BlpI GCTNAGC 1 cut(s) 972
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 4 cut(s) 233, 287, 658, 795
Bme18I GGWCC 3 cut(s) 500, 770, 1176
BmeT110I CYCGRG 1 cut(s) 457
BmgT120I GGNCC 7 cut(s) 248, 500, 744, 770, 797, 1176, 1194
BmiI GGNNCC 5 cut(s) 237, 746, 771, 1115, 1178
BmrFI CCNGG 4 cut(s) 233, 287, 658, 795
BmrI ACTGGG 1 cut(s) 839
BmsI GCATC 1 cut(s) 1094
BmuI ACTGGG 1 cut(s) 839
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 61, 93
Bpu1102I GCTNAGC 1 cut(s) 972
BpuEI CTTGAG 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 6 cut(s) 656, 693, 740, 1172, 1247, 1318
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 216, 245, 634, 1187
Bse1I ACTGG 2 cut(s) 28, 834
Bse8I GATNNNNATC 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 4 cut(s) 233, 287, 658, 795
BseDI CCNNGG 6 cut(s) 656, 693, 740, 1172, 1247, 1318
BseGI GGATG 3 cut(s) 32, 771, 1328
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 5 cut(s) 18, 216, 245, 634, 1187
BseMII CTCAG 7 cut(s) 126, 266, 392, 716, 872, 986, 1011
BseNI ACTGG 2 cut(s) 28, 834
BseRI GAGGAG 3 cut(s) 85, 1246, 1307
BseYI CCCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 1014
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 6 cut(s) 250, 745, 798, 1040, 1195, 1246
BsiHKAI GWGCWC 2 cut(s) 79, 133
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 2 cut(s) 536, 1162
BslI CCNNNNNNNGG 5 cut(s) 18, 216, 245, 634, 1187
BsmAI GTCTC 2 cut(s) 615, 1073
BsmFI GGGAC 2 cut(s) 536, 1162
BsmI GAATGC 2 cut(s) 145, 474
BsnI GGCC 6 cut(s) 250, 745, 798, 1040, 1195, 1246
BsoBI CYCGRG 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 79, 133
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 6 cut(s) 157, 271, 733, 814, 922, 1257
Bsp1720I GCTNAGC 1 cut(s) 972
Bsp19I CCATGG 1 cut(s) 1172
BspACI CCGC 3 cut(s) 503, 1236, 1307
BspANI GGCC 6 cut(s) 250, 745, 798, 1040, 1195, 1246
BspCNI CTCAG 7 cut(s) 127, 265, 391, 715, 871, 985, 1012
BspEI TCCGGA 1 cut(s) 196
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 5 cut(s) 237, 746, 771, 1115, 1178
BspMAI CTGCAG 1 cut(s) 1149
BsrBI CCGCTC 1 cut(s) 1236
BsrI ACTGG 2 cut(s) 28, 834
BssECI CCNNGG 6 cut(s) 656, 693, 740, 1172, 1247, 1318
BssMI GATC 6 cut(s) 157, 271, 733, 814, 922, 1257
BssSI CACGAG 1 cut(s) 1005
BssT1I CCWWGG 3 cut(s) 693, 1172, 1247
Bst2BI CACGAG 1 cut(s) 1005
Bst2UI CCWGG 4 cut(s) 233, 287, 658, 795
Bst4CI ACNGT 2 cut(s) 407, 902
BstC8I GCNNGC 6 cut(s) 1038, 1145, 1193, 1244, 1309, 1313
BstDSI CCRYGG 2 cut(s) 740, 1172
BstF5I GGATG 3 cut(s) 32, 771, 1328
BstFNI CGCG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 2 cut(s) 91, 666
BstKTI GATC 6 cut(s) 160, 274, 736, 817, 925, 1260
BstMAI GTCTC 2 cut(s) 615, 1073
BstMBI GATC 6 cut(s) 157, 271, 733, 814, 922, 1257
BstMWI GCNNNNNNNGC 5 cut(s) 14, 1016, 1025, 1037, 1120
BstNI CCWGG 4 cut(s) 233, 287, 658, 795
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 4 cut(s) 231, 285, 656, 793
BstSFI CTRYAG 1 cut(s) 1145
BstUI CGCG 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 6 cut(s) 250, 745, 798, 1040, 1195, 1246
BtgI CCRYGG 2 cut(s) 740, 1172
BtgZI GCGATG 1 cut(s) 1199
BtsCI GGATG 3 cut(s) 32, 771, 1328
BtsI GCAGTG 1 cut(s) 1115
BtsIMutI CAGTG 2 cut(s) 362, 1115
Cac8I GCNNGC 6 cut(s) 1038, 1145, 1193, 1244, 1309, 1313
CaiI CAGNNNCTG 1 cut(s) 979
CciI TCATGA 1 cut(s) 558
CfoI GCGC 2 cut(s) 91, 666
Cfr13I GGNCC 7 cut(s) 248, 500, 744, 770, 797, 1176, 1194
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 375, 541
CviAII CATG 6 cut(s) 178, 423, 559, 926, 1173, 1198
CviQI GTAC 2 cut(s) 375, 541
DpnI GATC 6 cut(s) 159, 273, 735, 816, 924, 1259
DpnII GATC 6 cut(s) 157, 271, 733, 814, 922, 1257
DraIII CACNNNGTG 1 cut(s) 219
Eco130I CCWWGG 3 cut(s) 693, 1172, 1247
Eco147I AGGCCT 1 cut(s) 1040
Eco47I GGWCC 3 cut(s) 500, 770, 1176
Eco57I CTGAAG 1 cut(s) 858
Eco88I CYCGRG 1 cut(s) 457
EcoO109I RGGNCCY 1 cut(s) 770
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 4 cut(s) 231, 285, 656, 793
EcoT14I CCWWGG 3 cut(s) 693, 1172, 1247
ErhI CCWWGG 3 cut(s) 693, 1172, 1247
FaeI CATG 6 cut(s) 181, 426, 562, 929, 1176, 1201
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 856, 888
FaqI GGGAC 2 cut(s) 536, 1162
FatI CATG 6 cut(s) 177, 422, 558, 925, 1172, 1197
FauI CCCGC 1 cut(s) 1300
FauNDI CATATG 1 cut(s) 148
FbaI TGATCA 3 cut(s) 157, 271, 922
FokI GGATG 3 cut(s) 39, 778, 1335
FspBI CTAG 2 cut(s) 216, 1011
GlaI GCGC 2 cut(s) 90, 665
GsaI CCCAGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 6 cut(s) 250, 745, 798, 1040, 1195, 1246
HapII CCGG 1 cut(s) 197
HgaI GACGC 1 cut(s) 80
HhaI GCGC 2 cut(s) 91, 666
Hin1II CATG 6 cut(s) 181, 426, 562, 929, 1176, 1201
Hin6I GCGC 2 cut(s) 89, 664
HinP1I GCGC 2 cut(s) 89, 664
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 2 cut(s) 865, 984
HinfI GANTC 5 cut(s) 119, 569, 587, 623, 893
HpaII CCGG 1 cut(s) 197
HphI GGTGA 4 cut(s) 86, 152, 506, 838
Hpy166II GTNNAC 2 cut(s) 403, 905
Hpy188III TCNNGA 6 cut(s) 134, 197, 315, 559, 614, 1132
Hpy8I GTNNAC 2 cut(s) 403, 905
HpyAV CCTTC 4 cut(s) 250, 388, 1045, 1201
HpyCH4III ACNGT 2 cut(s) 407, 902
HpyCH4V TGCA 9 cut(s) 177, 360, 426, 472, 932, 1031, 1126, 1147, 1283
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 1016, 1025, 1037, 1120
Hsp92II CATG 6 cut(s) 181, 426, 562, 929, 1176, 1201
HspAI GCGC 2 cut(s) 89, 664
Kpn2I TCCGGA 1 cut(s) 196
Ksp22I TGATCA 3 cut(s) 157, 271, 922
Kzo9I GATC 6 cut(s) 157, 271, 733, 814, 922, 1257
LmnI GCTCC 6 cut(s) 136, 199, 1054, 1119, 1233, 1320
LweI GCATC 1 cut(s) 1094
MaeI CTAG 2 cut(s) 216, 1011
MaeIII GTNAC 4 cut(s) 92, 436, 844, 878
MalI GATC 6 cut(s) 159, 273, 735, 816, 924, 1259
MbiI CCGCTC 1 cut(s) 1236
MboI GATC 6 cut(s) 157, 271, 733, 814, 922, 1257
MboII GAAGA 4 cut(s) 99, 728, 1213, 1216
MhlI GDGCHC 2 cut(s) 79, 133
MluCI AATT 6 cut(s) 43, 260, 310, 489, 727, 802
MnlI CCTC 6 cut(s) 63, 121, 261, 358, 1224, 1328
MroI TCCGGA 1 cut(s) 196
MseI TTAA 4 cut(s) 324, 753, 1152, 1354
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 3 cut(s) 508, 976, 1093
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 4 cut(s) 233, 287, 658, 795
Mva1269I GAATGC 2 cut(s) 145, 474
MvaI CCWGG 4 cut(s) 233, 287, 658, 795
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 5 cut(s) 14, 1016, 1025, 1037, 1120
NcoI CCATGG 1 cut(s) 1172
NdeI CATATG 1 cut(s) 148
NdeII GATC 6 cut(s) 157, 271, 733, 814, 922, 1257
NlaIII CATG 6 cut(s) 181, 426, 562, 929, 1176, 1201
NlaIV GGNNCC 5 cut(s) 237, 746, 771, 1115, 1178
NmuCI GTSAC 4 cut(s) 92, 436, 844, 878
NspI RCATGY 1 cut(s) 181
PagI TCATGA 1 cut(s) 558
PceI AGGCCT 1 cut(s) 1040
PctI GAATGC 2 cut(s) 145, 474
PfeI GAWTC 5 cut(s) 119, 569, 587, 623, 893
PflMI CCANNNNNTGG 1 cut(s) 634
PpuMI RGGWCCY 1 cut(s) 770
PshBI ATTAAT 1 cut(s) 324
PsiI TTATAA 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 770
Psp6I CCWGG 4 cut(s) 231, 285, 656, 793
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 4 cut(s) 231, 285, 656, 793
PspN4I GGNNCC 5 cut(s) 237, 746, 771, 1115, 1178
PspPI GGNCC 7 cut(s) 248, 500, 744, 770, 797, 1176, 1194
PspPPI RGGWCCY 1 cut(s) 770
PstI CTGCAG 1 cut(s) 1149
PstNI CAGNNNCTG 1 cut(s) 979
PvuII CAGCTG 3 cut(s) 508, 976, 1093
RsaI GTAC 2 cut(s) 376, 542
RsaNI GTAC 2 cut(s) 375, 541
RseI CAYNNNNRTG 1 cut(s) 918
SaqAI TTAA 4 cut(s) 324, 753, 1152, 1354
Sau3AI GATC 6 cut(s) 157, 271, 733, 814, 922, 1257
Sau96I GGNCC 7 cut(s) 248, 500, 744, 770, 797, 1176, 1194
ScaI AGTACT 1 cut(s) 376
ScrFI CCNGG 4 cut(s) 233, 287, 658, 795
SduI GDGCHC 2 cut(s) 79, 133
SfaNI GCATC 1 cut(s) 1094
SfcI CTRYAG 1 cut(s) 1145
SinI GGWCC 3 cut(s) 500, 770, 1176
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 6 cut(s) 43, 260, 310, 489, 727, 802
SseBI AGGCCT 1 cut(s) 1040
SsiI CCGC 3 cut(s) 503, 1236, 1307
SspMI CTAG 2 cut(s) 216, 1011
StuI AGGCCT 1 cut(s) 1040
StyD4I CCNGG 4 cut(s) 231, 285, 656, 793
StyI CCWWGG 3 cut(s) 693, 1172, 1247
TaaI ACNGT 2 cut(s) 407, 902
TaqI TCGA 1 cut(s) 1131
TasI AATT 6 cut(s) 43, 260, 310, 489, 727, 802
TatI WGTACW 1 cut(s) 374
TauI GCSGC 1 cut(s) 1239
TfiI GAWTC 5 cut(s) 119, 569, 587, 623, 893
Tru1I TTAA 4 cut(s) 324, 753, 1152, 1354
Tru9I TTAA 4 cut(s) 324, 753, 1152, 1354
TscAI CASTG 2 cut(s) 362, 1115
TseFI GTSAC 4 cut(s) 92, 436, 844, 878
Tsp45I GTSAC 4 cut(s) 92, 436, 844, 878
TspDTI ATGAA 5 cut(s) 135, 547, 575, 972, 1214
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 2 cut(s) 362, 1115
Van91I CCANNNNNTGG 1 cut(s) 634
VpaK11BI GGWCC 3 cut(s) 500, 770, 1176
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 2 cut(s) 260, 310
XceI RCATGY 1 cut(s) 181
XspI CTAG 2 cut(s) 216, 1011
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.