Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019867

Physical Location & Seq

Genomic Coordinates Reverse (-)

27706743 .. 27707795

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCCTCCAGTCTCAGTTACAGCCTACCGCCGCCGGAGGCAGCAGGTCGGCGTTCTCCGAGCAAGCAGAGGCAGATCAAATATCTTTACAGCCACGTGTCACAGGGCGACGGGATGATGTCAAAAGACTCGATTCAGATCAACTTTGTGGTCCAAACGTCGAGAGGAAGCTGCTGGGTTGGGGATCCAAACGCCGTCGTTTACGGCCAATTTCACCTCAACGGTCGCTCGACCATCAACGACGACTTATCTTCAAGACCCAGCCTTTCAAGCAAACTGGGTCGGAAGCTTTCGGGGTGGGGTGTGCCTCAACCTCAGCAGGCAACGATTGTTGAACAGGTGTTTCGGCTGCTCGAAAAGGCCAAGGGTGTCGTTGTCACCATCCAGAAATCGACTGTGTTCATTTTCGATAGTTTGAAAGACCACCAAACCATGGTGGAGCATATCAAGAAGACCGATTCGGAGCATTTTGAGGGTTTGGGGAAAGTGACATCAGTTGGAGACATCGTCCCTCCTCCATCATGCTCTATTTGTTTGGAGGGCGTTTCACAAGCCCAAGCTCAAAGTGGCGGTGTTGCTCGCTTGCCCTGTTCCCACATTTATCACAAAAACTGCATTCTCCCGTGGCTGAACAAGAGTCATTTGTGTCCCATTTGCCGACACCCTGGCCCAATTTCCCAAGCCCAATTGGGCAAACCCTCAAAACCCCGCCTCCTCCGCGTAGGGTTTAGGCGGGGGTGGTGGAAGAGGTTTAGGGCTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

254

Amino Acids

28.08

Weight (kDa)

9.89

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	174 - 220	1.7e-12	Ring finger domain
zf-RING_11	PF17123	175 - 206	1e-07	RING-like zinc finger
zf-C3HC4	PF00097	175 - 219	6.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	175 - 219	1e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_Vps41	PF23555	175 - 219	2e-06	Vps41 C-terminal RING finger domain
zf-RING_UBOX	PF13445	175 - 217	2.4e-06	RING-type zinc-finger
zf-rbx1	PF12678	190 - 220	7.5e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019867)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0115561
rosa_roxburghii	Rroxscaffold_2G00127650 Rroxscaffold_2G00127730 Rroxscaffold_2G00128480 Rroxscaffold_2G00128570
rosa_samantha	Rh2BG266200 Rh2CG260600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccII	CGCG	1 cut(s)	720
AciI	CCGC	6 cut(s)	29, 32, 570, 709, 718, 733
AclWI	GGATC	2 cut(s)	179, 192
AcoI	YGGCCR	1 cut(s)	205
AcvI	CACGTG	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	255, 270, 335, 418
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	3 cut(s)	171, 289, 560
AluI	AGCT	3 cut(s)	171, 289, 560
Alw26I	GTCTC	2 cut(s)	17, 495
AlwI	GGATC	2 cut(s)	179, 192
AoxI	GGCC	3 cut(s)	205, 360, 667
ApeKI	GCWGC	3 cut(s)	41, 171, 349
AspS9I	GGNCC	2 cut(s)	151, 668
AsuHPI	GGTGA	2 cut(s)	206, 370
AvaII	GGWCC	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	184
BbrPI	CACGTG	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	458
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	53, 158, 336
BccI	CCATC	3 cut(s)	242, 389, 526
BceAI	ACGGC	2 cut(s)	179, 220
BciT130I	CCWGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	17, 495
BfaI	CTAG	1 cut(s)	759
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	4 cut(s)	32, 42, 172, 350
BlsI	GCNGC	4 cut(s)	33, 43, 173, 351
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	151, 668
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	666
BmrI	ACTGGG	1 cut(s)	287
BmuI	ACTGGG	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	458
Bpu10I	CCTNAGC	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	4 cut(s)	363, 432, 623, 664
BsaXI	ACNNNNNCTCC	4 cut(s)	492, 522, 696, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	9, 282
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	4 cut(s)	363, 432, 623, 664
BseGI	GGATG	2 cut(s)	120, 381
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	28, 329
BseNI	ACTGG	2 cut(s)	9, 282
BseRI	GAGGAG	2 cut(s)	504, 704
BseXI	GCAGC	3 cut(s)	53, 158, 336
BseYI	CCCAGC	2 cut(s)	174, 260
Bsh1236I	CGCG	1 cut(s)	720
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	207, 362, 669
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	494, 633
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	17, 495
BsmFI	GGGAC	2 cut(s)	494, 633
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	3 cut(s)	207, 362, 669
Bsp143I	GATC	3 cut(s)	75, 138, 184
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	6 cut(s)	29, 32, 570, 709, 718, 733
BspANI	GGCC	3 cut(s)	207, 362, 669
BspCNI	CTCAG	2 cut(s)	27, 328
BspFNI	CGCG	1 cut(s)	720
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	2 cut(s)	179, 192
BsrI	ACTGG	2 cut(s)	9, 282
BssECI	CCNNGG	4 cut(s)	363, 432, 623, 664
BssMI	GATC	3 cut(s)	75, 138, 184
BssT1I	CCWWGG	2 cut(s)	363, 432
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	2 cut(s)	224, 397
Bst6I	CTCTTC	1 cut(s)	740
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	65, 321, 580, 584
BstDEI	CTNAG	2 cut(s)	14, 315
BstDSI	CCRYGG	2 cut(s)	432, 623
BstF5I	GGATG	2 cut(s)	120, 381
BstFNI	CGCG	1 cut(s)	720
BstKTI	GATC	3 cut(s)	78, 141, 187
BstMAI	GTCTC	2 cut(s)	17, 495
BstMBI	GATC	3 cut(s)	75, 138, 184
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 717
BstNI	CCWGG	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	664
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	53, 158, 336
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	207, 362, 669
BtgI	CCRYGG	2 cut(s)	432, 623
BtsCI	GGATG	2 cut(s)	120, 381
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	4 cut(s)	65, 321, 580, 584
Cfr13I	GGNCC	2 cut(s)	151, 668
CviAII	CATG	2 cut(s)	433, 522
DdeI	CTNAG	2 cut(s)	14, 315
DpnI	GATC	3 cut(s)	77, 140, 186
DpnII	GATC	3 cut(s)	75, 138, 184
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	740
EarI	CTCTTC	1 cut(s)	740
Eco130I	CCWWGG	2 cut(s)	363, 432
Eco47I	GGWCC	1 cut(s)	151
Eco72I	CACGTG	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	2 cut(s)	363, 432
ErhI	CCWWGG	2 cut(s)	363, 432
FaeI	CATG	2 cut(s)	436, 525
FaiI	YATR	3 cut(s)	434, 444, 523
FaqI	GGGAC	2 cut(s)	494, 633
FatI	CATG	2 cut(s)	432, 521
FauI	CCCGC	2 cut(s)	716, 726
Fnu4HI	GCNGC	4 cut(s)	32, 42, 172, 350
FokI	GGATG	2 cut(s)	127, 368
Fsp4HI	GCNGC	4 cut(s)	32, 42, 172, 350
FspBI	CTAG	1 cut(s)	759
GluI	GCNGC	4 cut(s)	32, 42, 172, 350
GsaI	CCCAGC	2 cut(s)	178, 264
HaeIII	GGCC	3 cut(s)	207, 362, 669
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	2 cut(s)	436, 525
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	4 cut(s)	128, 133, 458, 637
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	206, 370
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	4 cut(s)	60, 138, 285, 463
Hpy188III	TCNNGA	4 cut(s)	162, 255, 385, 448
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	4 cut(s)	113, 163, 200, 245
HpyCH4III	ACNGT	2 cut(s)	224, 397
HpyCH4IV	ACGT	2 cut(s)	96, 158
HpyCH4V	TGCA	1 cut(s)	615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 717
HpyF3I	CTNAG	2 cut(s)	14, 315
HpySE526I	ACGT	2 cut(s)	96, 158
Hsp92II	CATG	2 cut(s)	436, 525
Kzo9I	GATC	3 cut(s)	75, 138, 184
LmnI	GCTCC	2 cut(s)	439, 463
Lsp1109I	GCAGC	3 cut(s)	53, 158, 336
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	2 cut(s)	96, 158
MaeIII	GTNAC	4 cut(s)	17, 99, 376, 487
MalI	GATC	3 cut(s)	77, 140, 186
MboI	GATC	3 cut(s)	75, 138, 184
MboII	GAAGA	3 cut(s)	243, 463, 757
MfeI	CAATTG	1 cut(s)	686
MflI	RGATCY	1 cut(s)	184
MluCI	AATT	3 cut(s)	209, 672, 686
MlyI	GAGTC	2 cut(s)	122, 646
MmeI	TCCRAC	2 cut(s)	263, 478
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	666
MunI	CAATTG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	666
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	270, 717
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	3 cut(s)	75, 138, 184
NlaIII	CATG	2 cut(s)	436, 525
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	3 cut(s)	99, 376, 487
PctI	GAATGC	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	133, 458
PflFI	GACNNNGTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	4 cut(s)	33, 43, 173, 351
PleI	GAGTC	2 cut(s)	122, 645
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	2 cut(s)	122, 645
Ppu21I	YACGTR	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	664
PspCI	CACGTG	1 cut(s)	97
PspFI	CCCAGC	2 cut(s)	174, 260
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	151, 668
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	506
SatI	GCNGC	4 cut(s)	32, 42, 172, 350
Sau3AI	GATC	3 cut(s)	75, 138, 184
Sau96I	GGNCC	2 cut(s)	151, 668
SchI	GAGTC	2 cut(s)	122, 646
ScrFI	CCNGG	1 cut(s)	666
SinI	GGWCC	1 cut(s)	151
Sse9I	AATT	3 cut(s)	209, 672, 686
SsiI	CCGC	6 cut(s)	29, 32, 570, 709, 718, 733
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	2 cut(s)	363, 432
TaaI	ACNGT	2 cut(s)	224, 397
TaiI	ACGT	2 cut(s)	99, 161
TaqI	TCGA	6 cut(s)	131, 161, 230, 354, 392, 408
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	3 cut(s)	209, 672, 686
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	133, 458
TseFI	GTSAC	3 cut(s)	99, 376, 487
TseI	GCWGC	3 cut(s)	41, 171, 349
Tsp45I	GTSAC	3 cut(s)	99, 376, 487
TspDTI	ATGAA	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	506
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.