Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019867

Physical Location & Seq

Genomic Coordinates Reverse (-)

28621327 .. 28622607

Gene Structure 1281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG266200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCCCTCCAGTCTCAGTTACAGCCTACCGCCGCCGGAGGCAGCAGGTCAGCGTTCTCCGAGCAAGCAGAGGCAGATCAAATATCTTTACAGCCACGTGTCACAGGGCGGCGACGGGATGATGGCAAAAGACTCGATTCAGATCAACTTTGTGGTCCAAACGTCGAGAGGAAGCTGCTGGGTTGGGGACCCAAACGCCGTCGTTTACGGGCAATTTCACCTCAAAGGTCGCTCAACCATCAACGACGACGACTTATCTTCAAGACCCAGCCTTTCAAGCAAACTGGGTCGGAAGCTTTCGGGGTGGGGTGTGCCTCAACCTCAGCAGGCAACGATTCTTGAACAGGTGTTTCGGGTGCTCGAAAAGGCCAAGGGTGTCGTTGTCACCATCCAGAAATCGACTGTGTTCATTTTCGATAGTTTGAAAGACCACCAAACCATGGTGGAGCATATCAAGAAGACCGATTCGGAGCATTTTGAGGGTTTGGGGAAAGTGACATCAGTTGGAGACATCATCCCTCCTCCATCATGCTCTATTTGTTTGGAGGGCGTTTCACAAGCCCAAGCTCAAAGTGGCGGTGTTGCTCGCTTGCCCTGTTCCCACATTTATCACAAAAACTGCATTCTCCCGTGGCTGAACAAGAGTCATTTGTGTCCCATTTGCCGACACCCTGGCCCAATTTCCCAAGCCCAATTGGGCAAACCCTCAAAACCCCGCCTCCTCCGCCTAGGGTTTAGGCGGGGGTGGTGGAAGAGGTTTAGGGCTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

256

Amino Acids

28.25

Weight (kDa)

9.8

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	176 - 222	1.7e-12	Ring finger domain
zf-RING_11	PF17123	177 - 208	1e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	177 - 221	8.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	177 - 221	6.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_Vps41	PF23555	177 - 221	2e-06	Vps41 C-terminal RING finger domain
zf-RING_UBOX	PF13445	177 - 219	2.4e-06	RING-type zinc-finger
zf-rbx1	PF12678	192 - 222	7.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019867)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0115561
rosa_roxburghii	Rroxscaffold_2G00127650 Rroxscaffold_2G00127730 Rroxscaffold_2G00128480 Rroxscaffold_2G00128570
rosa_samantha	Rh2BG266200 Rh2CG260600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	439
AciI	CCGC	7 cut(s)	29, 32, 108, 576, 715, 724, 739
AcvI	CACGTG	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	261, 276, 341, 424
AjnI	CCWGG	1 cut(s)	670
AluBI	AGCT	3 cut(s)	174, 295, 566
AluI	AGCT	3 cut(s)	174, 295, 566
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	17, 501
AoxI	GGCC	2 cut(s)	366, 673
ApeKI	GCWGC	2 cut(s)	41, 174
AspA2I	CCTAGG	1 cut(s)	727
AspS9I	GGNCC	3 cut(s)	154, 187, 674
AsuHPI	GGTGA	2 cut(s)	209, 376
AvaII	GGWCC	2 cut(s)	154, 187
AvrII	CCTAGG	1 cut(s)	727
BbrPI	CACGTG	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	53, 161
BccI	CCATC	4 cut(s)	115, 245, 395, 532
BceAI	ACGGC	1 cut(s)	182
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BciT130I	CCWGG	1 cut(s)	672
BcoDI	GTCTC	2 cut(s)	17, 501
BfaI	CTAG	2 cut(s)	728, 765
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	4 cut(s)	32, 42, 109, 175
BlnI	CCTAGG	1 cut(s)	727
BlsI	GCNGC	4 cut(s)	33, 43, 110, 176
Bme1390I	CCNGG	1 cut(s)	672
Bme18I	GGWCC	2 cut(s)	154, 187
BmgT120I	GGNCC	3 cut(s)	154, 187, 674
BmiI	GGNNCC	2 cut(s)	188, 189
BmrFI	CCNGG	1 cut(s)	672
BmrI	ACTGGG	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	5 cut(s)	369, 438, 629, 670, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	9, 288
Bse8I	GATNNNNATC	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	5 cut(s)	369, 438, 629, 670, 727
BseGI	GGATG	3 cut(s)	123, 387, 513
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	28, 335
BseNI	ACTGG	2 cut(s)	9, 288
BseRI	GAGGAG	2 cut(s)	510, 710
BseXI	GCAGC	2 cut(s)	53, 161
BseYI	CCCAGC	2 cut(s)	177, 266
BshFI	GGCC	2 cut(s)	368, 675
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	200, 639
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	17, 501
BsmFI	GGGAC	2 cut(s)	200, 639
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	2 cut(s)	368, 675
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	75, 141
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	7 cut(s)	29, 32, 108, 576, 715, 724, 739
BspANI	GGCC	2 cut(s)	368, 675
BspCNI	CTCAG	2 cut(s)	27, 334
BspLI	GGNNCC	2 cut(s)	188, 189
BspMI	ACCTGC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	9, 288
BssECI	CCNNGG	5 cut(s)	369, 438, 629, 670, 727
BssMI	GATC	2 cut(s)	75, 141
BssT1I	CCWWGG	3 cut(s)	369, 438, 727
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	746
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	65, 327, 586, 590
BstDEI	CTNAG	2 cut(s)	14, 321
BstDSI	CCRYGG	2 cut(s)	438, 629
BstF5I	GGATG	3 cut(s)	123, 387, 513
BstKTI	GATC	2 cut(s)	78, 144
BstMAI	GTCTC	2 cut(s)	17, 501
BstMBI	GATC	2 cut(s)	75, 141
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 723
BstNI	CCWGG	1 cut(s)	672
BstSCI	CCNGG	1 cut(s)	670
BstV1I	GCAGC	2 cut(s)	53, 161
BstV2I	GAAGAC	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	368, 675
BtgI	CCRYGG	2 cut(s)	438, 629
BtsCI	GGATG	3 cut(s)	123, 387, 513
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	4 cut(s)	65, 327, 586, 590
Cfr13I	GGNCC	3 cut(s)	154, 187, 674
CviAII	CATG	2 cut(s)	439, 528
DdeI	CTNAG	2 cut(s)	14, 321
DpnI	GATC	2 cut(s)	77, 143
DpnII	GATC	2 cut(s)	75, 141
Eam1104I	CTCTTC	1 cut(s)	746
EarI	CTCTTC	1 cut(s)	746
EciI	GGCGGA	1 cut(s)	713
Eco130I	CCWWGG	3 cut(s)	369, 438, 727
Eco47I	GGWCC	2 cut(s)	154, 187
Eco72I	CACGTG	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	670
EcoT14I	CCWWGG	3 cut(s)	369, 438, 727
ErhI	CCWWGG	3 cut(s)	369, 438, 727
FaeI	CATG	2 cut(s)	442, 531
FaiI	YATR	3 cut(s)	440, 450, 529
FaqI	GGGAC	2 cut(s)	200, 639
FatI	CATG	2 cut(s)	438, 527
FauI	CCCGC	2 cut(s)	722, 732
Fnu4HI	GCNGC	4 cut(s)	32, 42, 109, 175
FokI	GGATG	3 cut(s)	130, 374, 500
Fsp4HI	GCNGC	4 cut(s)	32, 42, 109, 175
FspBI	CTAG	2 cut(s)	728, 765
GluI	GCNGC	4 cut(s)	32, 42, 109, 175
GsaI	CCCAGC	2 cut(s)	181, 270
HaeIII	GGCC	2 cut(s)	368, 675
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	2 cut(s)	442, 531
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	5 cut(s)	131, 136, 334, 464, 643
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	209, 376
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	60, 141, 291, 469
Hpy188III	TCNNGA	5 cut(s)	165, 261, 338, 391, 454
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	5 cut(s)	116, 166, 203, 248, 251
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	96, 161
HpyCH4V	TGCA	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 723
HpyF3I	CTNAG	2 cut(s)	14, 321
HpySE526I	ACGT	2 cut(s)	96, 161
Hsp92II	CATG	2 cut(s)	442, 531
KflI	GGGWCCC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	75, 141
LmnI	GCTCC	2 cut(s)	445, 469
Lsp1109I	GCAGC	2 cut(s)	53, 161
MaeI	CTAG	2 cut(s)	728, 765
MaeII	ACGT	2 cut(s)	96, 161
MaeIII	GTNAC	4 cut(s)	17, 99, 382, 493
MalI	GATC	2 cut(s)	77, 143
MboI	GATC	2 cut(s)	75, 141
MboII	GAAGA	3 cut(s)	249, 469, 763
MfeI	CAATTG	1 cut(s)	692
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	3 cut(s)	212, 678, 692
MlyI	GAGTC	2 cut(s)	125, 652
MmeI	TCCRAC	2 cut(s)	269, 484
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	672
MunI	CAATTG	1 cut(s)	692
Mva1269I	GAATGC	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	672
MwoI	GCNNNNNNNGC	2 cut(s)	276, 723
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	2 cut(s)	75, 141
NlaIII	CATG	2 cut(s)	442, 531
NlaIV	GGNNCC	2 cut(s)	188, 189
NmuCI	GTSAC	3 cut(s)	99, 382, 493
PctI	GAATGC	1 cut(s)	621
PfeI	GAWTC	3 cut(s)	136, 334, 464
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	33, 43, 110, 176
PleI	GAGTC	2 cut(s)	125, 651
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	2 cut(s)	125, 651
Ppu21I	YACGTR	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	670
PspCI	CACGTG	1 cut(s)	97
PspFI	CCCAGC	2 cut(s)	177, 266
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	2 cut(s)	188, 189
PspPI	GGNCC	3 cut(s)	154, 187, 674
PspPPI	RGGWCCY	1 cut(s)	187
SatI	GCNGC	4 cut(s)	32, 42, 109, 175
Sau3AI	GATC	2 cut(s)	75, 141
Sau96I	GGNCC	3 cut(s)	154, 187, 674
SchI	GAGTC	2 cut(s)	125, 652
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	1 cut(s)	360
SinI	GGWCC	2 cut(s)	154, 187
Sse9I	AATT	3 cut(s)	212, 678, 692
SsiI	CCGC	7 cut(s)	29, 32, 108, 576, 715, 724, 739
SspMI	CTAG	2 cut(s)	728, 765
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	3 cut(s)	369, 438, 727
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	2 cut(s)	99, 164
TaqI	TCGA	5 cut(s)	134, 164, 360, 398, 414
TaqII	GACCGA	1 cut(s)	476
TasI	AATT	3 cut(s)	212, 678, 692
TauI	GCSGC	2 cut(s)	34, 111
TfiI	GAWTC	3 cut(s)	136, 334, 464
TseFI	GTSAC	3 cut(s)	99, 382, 493
TseI	GCWGC	2 cut(s)	41, 174
Tsp45I	GTSAC	3 cut(s)	99, 382, 493
TspDTI	ATGAA	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	154, 187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	569
XmaJI	CCTAGG	1 cut(s)	727
XspI	CTAG	2 cut(s)	728, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.