RchiOBHm_Chr2g0138441

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0021332
Physical Location & Seq
Forward (+)
56124948 .. 56129597
4650 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50913

Sequence Viewer

Length: 903 bp
ATGTCACATGATACAAGTCATGAGGTTAGGCTTTCCACACTGAATGGCACTATGCGTTTGTTTGGCAATCCCCCATGTCATCAATTTCTTAATGTGCTTCTACCCAGATTGGGGCATTTGATGATGGACAATGTCCTATCAATAAGAGTAGTGAAGTTAGATGAACTATTATCAACCCTTGAAAATGATCAACCTCAAGTTGCTCAGAAAATTGCAAGGTTGCTTATGCCATCATACTTTCCCTCAAAAGAAACAGTTGAAACAGCATGCAATCGTTGTACTACAATTGTAAAAAGGTCTCTGATGGCTGGAGCAAGGTTTTGTGAATTTGCTGCGTCCCAAGGGGCATCTCTTAAGTCTCTGATGGAACTTGTTAGGCAATCTAAAGTGAGGTCTGCTCACAATTTGTTGCTGTCTTGTGATGCGATTGATGGTATGCTGGAAGCACTAACAGCACTTCTGCAGAAATCAGCCTATCGTTGCCATATTAAATATGGCAGTGAAATTAAGAACTTGAGTGTTTTCTCTGCGAAAAGAAGGAAATCAAAGTCCTCTGGCAAAGTTTCAGCTCGACATAAACATGTTAGTAGAAAAAAAGTCACCAGTTTTGGGGAGGATTATTCAGTTGCGGCAGGAATAGCCTGGCAAATCAGGGACTCGCTTGTATCTGTCAATATTCAGAAGGCTATATTGGGATCTCAAACTCTAGAATCCTTACTTATATTAAAGGTCATTTCCGAGGTCAGCATTCTGGCATGCATTATGAATGTATGGACACATTTCCTGCTTCAGCATATACAGATCTTGCGCTGCATTCATCTTTTCAAAATGTCTCTTCCAATAAAAATGATAGGACTCATTCATCAGGGTCTACTTTGGAGACCGAGTTGGAACAGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

300

Amino Acids

33.74

Weight (kDa)

9.91

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021332)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0138441
rosa_multiflora Rmu_sc0001534.1_g000005
rosa_roxburghii Rroxscaffold_2G00106240
rosa_samantha Rh2AG399000 Rh2BG407100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 871
AciI CCGC 1 cut(s) 629
AclWI GGATC 1 cut(s) 703
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 3 cut(s) 110, 111, 609
AflII CTTAAG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 3 cut(s) 182, 260, 826
AjnI CCWGG 1 cut(s) 641
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AluBI AGCT 1 cut(s) 569
AluI AGCT 1 cut(s) 569
Alw26I GTCTC 4 cut(s) 303, 363, 837, 874
AlwI GGATC 1 cut(s) 703
ApeKI GCWGC 2 cut(s) 332, 810
ApoI RAATTY 1 cut(s) 326
AspLEI GCGC 1 cut(s) 810
AsuHPI GGTGA 1 cut(s) 592
BbvI GCAGC 2 cut(s) 319, 797
BccI CCATC 5 cut(s) 118, 238, 298, 358, 425
BciT130I CCWGG 1 cut(s) 643
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 4 cut(s) 303, 363, 837, 874
BfaI CTAG 1 cut(s) 707
BfmI CTRYAG 1 cut(s) 461
BfrI CTTAAG 1 cut(s) 353
BglII AGATCT 1 cut(s) 801
BisI GCNGC 3 cut(s) 333, 630, 811
BlsI GCNGC 3 cut(s) 334, 631, 812
Bme1390I CCNGG 1 cut(s) 643
BmrFI CCNGG 1 cut(s) 643
BmsI GCATC 2 cut(s) 356, 412
BplI GAGNNNNNCTC 2 cut(s) 382, 414
BpmI CTGGAG 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 180, 535
BsaI GGTCTC 2 cut(s) 303, 874
BsaJI CCNNGG 2 cut(s) 340, 738
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 111, 609
Bse1I ACTGG 1 cut(s) 603
BseBI CCWGG 1 cut(s) 643
BseDI CCNNGG 2 cut(s) 340, 738
BseLI CCNNNNNNNGG 3 cut(s) 110, 111, 609
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 603
BseXI GCAGC 2 cut(s) 319, 797
BslFI GGGAC 2 cut(s) 322, 668
BslI CCNNNNNNNGG 3 cut(s) 110, 111, 609
BsmAI GTCTC 4 cut(s) 303, 363, 837, 874
BsmFI GGGAC 2 cut(s) 322, 668
BsmI GAATGC 2 cut(s) 747, 813
Bso31I GGTCTC 2 cut(s) 303, 874
Bsp143I GATC 3 cut(s) 187, 695, 801
BspACI CCGC 1 cut(s) 629
BspCNI CTCAG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 465
BspPI GGATC 1 cut(s) 703
BspTI CTTAAG 1 cut(s) 353
BspTNI GGTCTC 2 cut(s) 303, 874
BsrI ACTGG 1 cut(s) 603
BssECI CCNNGG 2 cut(s) 340, 738
BssMI GATC 3 cut(s) 187, 695, 801
BssT1I CCWWGG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 643
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 840
BstAFI CTTAAG 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 268, 757
BstDEI CTNAG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 810
BstKTI GATC 3 cut(s) 190, 698, 804
BstMAI GTCTC 4 cut(s) 303, 363, 837, 874
BstMBI GATC 3 cut(s) 187, 695, 801
BstMWI GCNNNNNNNGC 2 cut(s) 452, 638
BstNI CCWGG 1 cut(s) 643
BstNSI RCATGY 3 cut(s) 270, 584, 759
BstSCI CCNGG 1 cut(s) 641
BstSFI CTRYAG 1 cut(s) 461
BstV1I GCAGC 2 cut(s) 319, 797
BstX2I RGATCY 2 cut(s) 695, 801
BstYI RGATCY 2 cut(s) 695, 801
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 2 cut(s) 38, 505
Cac8I GCNNGC 2 cut(s) 268, 757
CciI TCATGA 1 cut(s) 19
CfoI GCGC 1 cut(s) 810
CseI GACGC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 279
CviAII CATG 6 cut(s) 8, 20, 75, 267, 581, 756
CviJI RGCY 6 cut(s) 31, 308, 473, 569, 641, 686
CviKI_1 RGCY 6 cut(s) 31, 308, 473, 569, 641, 686
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 204
DpnI GATC 3 cut(s) 189, 697, 803
DpnII GATC 3 cut(s) 187, 695, 801
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Eco130I CCWWGG 1 cut(s) 340
Eco31I GGTCTC 2 cut(s) 303, 874
Eco57I CTGAAG 1 cut(s) 773
EcoRII CCWGG 1 cut(s) 641
EcoT14I CCWWGG 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 761
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 6 cut(s) 11, 23, 78, 270, 584, 759
FaqI GGGAC 2 cut(s) 322, 668
FatI CATG 6 cut(s) 7, 19, 74, 266, 580, 755
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 1 cut(s) 871
Fnu4HI GCNGC 3 cut(s) 333, 630, 811
Fsp4HI GCNGC 3 cut(s) 333, 630, 811
FspBI CTAG 1 cut(s) 707
GlaI GCGC 1 cut(s) 809
GluI GCNGC 3 cut(s) 333, 630, 811
GsuI CTGGAG 1 cut(s) 330
HgaI GACGC 1 cut(s) 324
HhaI GCGC 1 cut(s) 810
Hin1II CATG 6 cut(s) 11, 23, 78, 270, 584, 759
Hin6I GCGC 1 cut(s) 808
HinP1I GCGC 1 cut(s) 808
HinfI GANTC 3 cut(s) 656, 710, 855
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 1 cut(s) 872
Hpy188I TCNGA 5 cut(s) 207, 303, 363, 681, 739
Hpy188III TCNNGA 2 cut(s) 20, 707
Hpy8I GTNNAC 1 cut(s) 872
HpyAV CCTTC 2 cut(s) 531, 676
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 5 cut(s) 215, 270, 463, 759, 813
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 638
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 6 cut(s) 11, 23, 78, 270, 584, 759
HspAI GCGC 1 cut(s) 808
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 3 cut(s) 187, 695, 801
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 2 cut(s) 319, 797
LweI GCATC 2 cut(s) 356, 412
MaeI CTAG 1 cut(s) 707
MaeIII GTNAC 2 cut(s) 3, 598
MalI GATC 3 cut(s) 189, 697, 803
MboI GATC 3 cut(s) 187, 695, 801
MboII GAAGA 1 cut(s) 827
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 2 cut(s) 695, 801
MluCI AATT 6 cut(s) 83, 210, 285, 326, 403, 504
MlyI GAGTC 2 cut(s) 650, 849
MmeI TCCRAC 1 cut(s) 869
MnlI CCTC 7 cut(s) 16, 204, 253, 384, 562, 607, 733
Mph1103I ATGCAT 1 cut(s) 761
MseI TTAA 5 cut(s) 90, 354, 489, 507, 725
MslI CAYNNNNRTG 1 cut(s) 579
MspCI CTTAAG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 643
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 2 cut(s) 747, 813
MvaI CCWGG 1 cut(s) 643
MwoI GCNNNNNNNGC 2 cut(s) 452, 638
NdeII GATC 3 cut(s) 187, 695, 801
NlaIII CATG 6 cut(s) 11, 23, 78, 270, 584, 759
NmuCI GTSAC 2 cut(s) 3, 598
NsiI ATGCAT 1 cut(s) 761
NspI RCATGY 3 cut(s) 270, 584, 759
PaeI GCATGC 2 cut(s) 270, 759
PagI TCATGA 1 cut(s) 19
PciI ACATGT 1 cut(s) 580
PctI GAATGC 2 cut(s) 747, 813
PfeI GAWTC 1 cut(s) 710
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 3 cut(s) 334, 631, 812
PleI GAGTC 2 cut(s) 650, 849
PpsI GAGTC 2 cut(s) 650, 849
PscI ACATGT 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 641
PspGI CCWGG 1 cut(s) 641
PstI CTGCAG 1 cut(s) 465
PsuI RGATCY 2 cut(s) 695, 801
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 579
SaqAI TTAA 5 cut(s) 90, 354, 489, 507, 725
SatI GCNGC 3 cut(s) 333, 630, 811
Sau3AI GATC 3 cut(s) 187, 695, 801
SchI GAGTC 2 cut(s) 650, 849
ScrFI CCNGG 1 cut(s) 643
SetI ASST 9 cut(s) 27, 196, 221, 299, 320, 395, 571, 732, 744
SfaNI GCATC 2 cut(s) 356, 412
SfcI CTRYAG 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 3 cut(s) 195, 353, 514
SmoI CTYRAG 3 cut(s) 195, 353, 514
SphI GCATGC 2 cut(s) 270, 759
Sse9I AATT 6 cut(s) 83, 210, 285, 326, 403, 504
SsiI CCGC 1 cut(s) 629
SspI AATATT 1 cut(s) 676
SspMI CTAG 1 cut(s) 707
StyD4I CCNGG 1 cut(s) 641
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 571
TaqII GACCGA 1 cut(s) 898
TasI AATT 6 cut(s) 83, 210, 285, 326, 403, 504
TatI WGTACW 1 cut(s) 278
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 1 cut(s) 710
Tru1I TTAA 5 cut(s) 90, 354, 489, 507, 725
Tru9I TTAA 5 cut(s) 90, 354, 489, 507, 725
TscAI CASTG 2 cut(s) 45, 505
TseFI GTSAC 2 cut(s) 3, 598
TseI GCWGC 2 cut(s) 332, 810
Tsp45I GTSAC 2 cut(s) 3, 598
TspDTI ATGAA 4 cut(s) 177, 779, 806, 851
TspRI CASTG 2 cut(s) 45, 505
Tth111I GACNNNGTC 1 cut(s) 131
Vha464I CTTAAG 1 cut(s) 353
XapI RAATTY 1 cut(s) 326
XbaI TCTAGA 1 cut(s) 706
XceI RCATGY 3 cut(s) 270, 584, 759
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 871
XspI CTAG 1 cut(s) 707
Zsp2I ATGCAT 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.