Rh2BG407100

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0021332
Physical Location & Seq
Reverse (-)
57705047 .. 57706354
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG407100.1

Sequence Viewer

Length: 543 bp
ATGTGGCTGGAGAAGCAATCTGAAGTGAGGTCTGCTCACAATTTGTTCCTGTCTTGTGATGCGATTGATGGTATGCTGGAAGCACTAACAGCGCTTCTGCAGAAATCAGCCTATCGTTGCCATATTAAATATGGCAGTGAAATTAAGAACTTGAGTGTTTTCTCTGCGAAAAGAAGGAAATCAAAGTCCTCTGGCAAAGTTTCAGCTCGACATAAACATGTTAGTGGAAAAAAAGTCACCAGTTTTGGGGAGGATTATTCAGTTGCGGCAGGAATAGCCTGGCAAATCAGGGACTCGCTTGTATCTGTCAATATTCAGAAGGCTATATTGGGATCTCAAACTCTAGAATCCTTACTTATATTAAAGGTCATTTCCGAGGTCAGCATTCTGGCATGCATTATGAATGTATGGACACATTTCCTGCTTCAGCATATACAGATCTTGCGCTGCATTCATCTTTTCAAAATGTCTCTTCCAATAAAAATGATAGGACTCATTCATCAGGGTCTACTTTGGAGCAGACCGAGTTGGAACAGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

180

Amino Acids

20.35

Weight (kDa)

9.94

Isoelectric Point (pI)

63.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021332)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0138441
rosa_multiflora Rmu_sc0001534.1_g000005
rosa_roxburghii Rroxscaffold_2G00106240
rosa_samantha Rh2AG399000 Rh2BG407100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 508
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 340
AcuI CTGAAG 2 cut(s) 42, 410
AfeI AGCGCT 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 1 cut(s) 463
AjnI CCWGG 1 cut(s) 278
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 1 cut(s) 340
Aor51HI AGCGCT 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 447
AspLEI GCGC 2 cut(s) 94, 447
AsuHPI GGTGA 1 cut(s) 229
BbvI GCAGC 1 cut(s) 434
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 95
BglII AGATCT 1 cut(s) 438
BisI GCNGC 2 cut(s) 267, 448
BlsI GCNGC 2 cut(s) 268, 449
Bme1390I CCNGG 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 19, 51
BpmI CTGGAG 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 434
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 474
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 2 cut(s) 384, 450
Bsp143I GATC 2 cut(s) 332, 438
BspACI CCGC 1 cut(s) 266
BspMAI CTGCAG 1 cut(s) 102
BspPI GGATC 1 cut(s) 340
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 2 cut(s) 332, 438
Bst2UI CCWGG 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 394
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 2 cut(s) 94, 447
BstKTI GATC 2 cut(s) 335, 441
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 2 cut(s) 332, 438
BstMWI GCNNNNNNNGC 3 cut(s) 13, 89, 275
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 2 cut(s) 221, 396
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 434
BstX2I RGATCY 2 cut(s) 332, 438
BstYI RGATCY 2 cut(s) 332, 438
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 394
CfoI GCGC 2 cut(s) 94, 447
CviAII CATG 2 cut(s) 218, 393
CviJI RGCY 5 cut(s) 7, 110, 206, 278, 323
CviKI_1 RGCY 5 cut(s) 7, 110, 206, 278, 323
DpnI GATC 2 cut(s) 334, 440
DpnII GATC 2 cut(s) 332, 438
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco47III AGCGCT 1 cut(s) 93
Eco57I CTGAAG 2 cut(s) 42, 410
EcoRII CCWGG 1 cut(s) 278
EcoT22I ATGCAT 1 cut(s) 398
FaeI CATG 2 cut(s) 221, 396
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 217, 392
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 2 cut(s) 267, 448
Fsp4HI GCNGC 2 cut(s) 267, 448
FspBI CTAG 1 cut(s) 344
GlaI GCGC 2 cut(s) 93, 446
GluI GCNGC 2 cut(s) 267, 448
GsuI CTGGAG 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 95
HhaI GCGC 2 cut(s) 94, 447
Hin1II CATG 2 cut(s) 221, 396
Hin6I GCGC 2 cut(s) 92, 445
HinP1I GCGC 2 cut(s) 92, 445
HinfI GANTC 3 cut(s) 293, 347, 492
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 3 cut(s) 22, 318, 376
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 509
HpyAV CCTTC 2 cut(s) 168, 313
HpyCH4V TGCA 3 cut(s) 100, 396, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 89, 275
Hsp92II CATG 2 cut(s) 221, 396
HspAI GCGC 2 cut(s) 92, 445
Kzo9I GATC 2 cut(s) 332, 438
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 1 cut(s) 434
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 334, 440
MboI GATC 2 cut(s) 332, 438
MboII GAAGA 1 cut(s) 464
MflI RGATCY 2 cut(s) 332, 438
MluCI AATT 2 cut(s) 40, 141
MlyI GAGTC 2 cut(s) 287, 486
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 4 cut(s) 21, 199, 244, 370
Mph1103I ATGCAT 1 cut(s) 398
MseI TTAA 3 cut(s) 126, 144, 362
MslI CAYNNNNRTG 2 cut(s) 216, 222
MspR9I CCNGG 1 cut(s) 280
Mva1269I GAATGC 2 cut(s) 384, 450
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 13, 89, 275
NdeII GATC 2 cut(s) 332, 438
NlaIII CATG 2 cut(s) 221, 396
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 398
NspI RCATGY 2 cut(s) 221, 396
PaeI GCATGC 1 cut(s) 396
PciI ACATGT 1 cut(s) 217
PctI GAATGC 2 cut(s) 384, 450
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 2 cut(s) 268, 449
PleI GAGTC 2 cut(s) 287, 486
PpsI GAGTC 2 cut(s) 287, 486
PscI ACATGT 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PstI CTGCAG 1 cut(s) 102
PsuI RGATCY 2 cut(s) 332, 438
RseI CAYNNNNRTG 2 cut(s) 216, 222
SaqAI TTAA 3 cut(s) 126, 144, 362
SatI GCNGC 2 cut(s) 267, 448
Sau3AI GATC 2 cut(s) 332, 438
SchI GAGTC 2 cut(s) 287, 486
ScrFI CCNGG 1 cut(s) 280
SetI ASST 4 cut(s) 32, 208, 369, 381
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 98
SmiMI CAYNNNNRTG 2 cut(s) 216, 222
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SphI GCATGC 1 cut(s) 396
Sse9I AATT 2 cut(s) 40, 141
SsiI CCGC 1 cut(s) 266
SspI AATATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 278
TaqI TCGA 1 cut(s) 208
TaqII GACCGA 1 cut(s) 538
TasI AATT 2 cut(s) 40, 141
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 3 cut(s) 126, 144, 362
Tru9I TTAA 3 cut(s) 126, 144, 362
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 416, 443, 488
TspRI CASTG 1 cut(s) 142
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 2 cut(s) 221, 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 508
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.