Rh2AG399000

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0021332
Physical Location & Seq
Forward (+)
59529715 .. 59532333
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG399000.1

Sequence Viewer

Length: 777 bp
ATGTGGCCGGAGAAGCAATCTGAAGTGAGGTCTGCTCACAATTTGTTGCTGTCTTGTGATGCGATTGATGGTATGCTGGAAGCACTAACAGCACTTCTGCAGAAATCAGCCTATCGTTGCCATATTAAATATGGCAGTGAAATTAAGAACTTGAGTGTTTTCTCTGCGAAAAGAAGGAAATCAAAGTCCTCTGGCAAAGTTTCAGCTCGACATAAACATGTTAGTGGAAAAAAAGTCACCAGTTTTGGGGAGGATTATTCAGTCGCGGCAGGAATAGCCTGGCAGATCAGGGACTCGCTTGTATTTGTCAATACTCAGAAGGCTATATTGGGATCTCAAACTCTAGAATCCTTACTTATATTAAAGGTCATTTCCGAGGTCAGCATTCTGGCATGCATTATGAATGTATGGACACATTTCCTGTTTCAGCATATACAGATCTTGCGCTGCATTCATCTTTTCAAAATGTCTCTTCCAATAAAAATGATAGGACTCATTCATCAGGGTCTACTTTGGAGCATGCAGGGTGTGTCTGGGGCGATCTTCATGATTGGCTCTATAGTAGGGCTGGAAAAGAAAAATTTTAGGCTAGTTTCCGGACTTCTACGCTTCGTATGCCTGAAGATATTTAAGCATGATGATAGGGAATGGGGTGATTTGATGTTGGCATTTCTGCAAGATATCTACCCTCAGATTGAGAGAGAAATCGAGGAAGAGTGTGATGAAGATGGAAGGGAAAAACTGGAAAAAGCCAAGGACTTGCTGGAACCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

258

Amino Acids

29.29

Weight (kDa)

8.82

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021332)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0138441
rosa_multiflora Rmu_sc0001534.1_g000005
rosa_roxburghii Rroxscaffold_2G00106240
rosa_samantha Rh2AG399000 Rh2BG407100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 508
AccII CGCG 1 cut(s) 266
AccIII TCCGGA 1 cut(s) 596
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 5
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 2 cut(s) 42, 641
AfiI CCNNNNNNNGG 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 1 cut(s) 463
AjnI CCWGG 1 cut(s) 278
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 596
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 447
ApoI RAATTY 1 cut(s) 580
AspLEI GCGC 1 cut(s) 447
AsuHPI GGTGA 2 cut(s) 229, 665
BbvI GCAGC 1 cut(s) 434
BccI CCATC 2 cut(s) 62, 722
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 2 cut(s) 344, 590
BfmI CTRYAG 2 cut(s) 98, 558
BglII AGATCT 1 cut(s) 438
BisI GCNGC 2 cut(s) 267, 448
BlsI GCNGC 2 cut(s) 268, 449
Bme1390I CCNGG 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 768
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 19, 51
BpuEI CTTGAG 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 375, 753
BsaWI WCCGGW 1 cut(s) 596
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse1I ACTGG 2 cut(s) 240, 747
BseAI TCCGGA 1 cut(s) 596
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 375, 753
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 329, 704
BseNI ACTGG 2 cut(s) 240, 747
BseXI GCAGC 1 cut(s) 434
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 1 cut(s) 7
BsiSI CCGG 2 cut(s) 8, 597
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 474
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 2 cut(s) 384, 450
BsnI GGCC 1 cut(s) 7
Bsp13I TCCGGA 1 cut(s) 596
Bsp143I GATC 4 cut(s) 285, 332, 438, 540
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 2 cut(s) 328, 703
BspEI TCCGGA 1 cut(s) 596
BspFNI CGCG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 1 cut(s) 768
BspMAI CTGCAG 1 cut(s) 102
BspPI GGATC 1 cut(s) 340
BsrI ACTGG 2 cut(s) 240, 747
BssECI CCNNGG 2 cut(s) 375, 753
BssMI GATC 4 cut(s) 285, 332, 438, 540
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 477, 708
BstC8I GCNNGC 2 cut(s) 394, 521
BstDEI CTNAG 2 cut(s) 315, 690
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 4 cut(s) 288, 335, 441, 543
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 4 cut(s) 285, 332, 438, 540
BstMWI GCNNNNNNNGC 4 cut(s) 13, 89, 275, 615
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 3 cut(s) 221, 396, 523
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 2 cut(s) 98, 558
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 434
BstX2I RGATCY 2 cut(s) 332, 438
BstYI RGATCY 2 cut(s) 332, 438
BsuRI GGCC 1 cut(s) 7
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 2 cut(s) 394, 521
CciI TCATGA 1 cut(s) 546
CfoI GCGC 1 cut(s) 447
CviAII CATG 5 cut(s) 218, 393, 520, 547, 635
CviJI RGCY 9 cut(s) 7, 110, 206, 278, 323, 555, 568, 589, 752
CviKI_1 RGCY 9 cut(s) 7, 110, 206, 278, 323, 555, 568, 589, 752
DdeI CTNAG 2 cut(s) 315, 690
DpnI GATC 4 cut(s) 287, 334, 440, 542
DpnII GATC 4 cut(s) 285, 332, 438, 540
EaeI YGGCCR 1 cut(s) 5
Eam1104I CTCTTC 2 cut(s) 477, 708
EarI CTCTTC 2 cut(s) 477, 708
Eco130I CCWWGG 1 cut(s) 753
Eco32I GATATC 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 42, 641
EcoRII CCWGG 1 cut(s) 278
EcoRV GATATC 1 cut(s) 682
EcoT14I CCWWGG 1 cut(s) 753
EcoT22I ATGCAT 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 753
FaeI CATG 5 cut(s) 221, 396, 523, 550, 638
FaqI GGGAC 1 cut(s) 305
FatI CATG 5 cut(s) 217, 392, 519, 546, 634
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 2 cut(s) 267, 448
Fsp4HI GCNGC 2 cut(s) 267, 448
FspBI CTAG 2 cut(s) 344, 590
GlaI GCGC 1 cut(s) 446
GluI GCNGC 2 cut(s) 267, 448
HaeIII GGCC 1 cut(s) 7
HapII CCGG 2 cut(s) 8, 597
HhaI GCGC 1 cut(s) 447
Hin1II CATG 5 cut(s) 221, 396, 523, 550, 638
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HinfI GANTC 3 cut(s) 293, 347, 492
HpaII CCGG 2 cut(s) 8, 597
HphI GGTGA 2 cut(s) 229, 665
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 4 cut(s) 22, 318, 376, 693
Hpy188III TCNNGA 3 cut(s) 344, 547, 597
Hpy8I GTNNAC 1 cut(s) 509
HpyAV CCTTC 3 cut(s) 168, 313, 726
HpyCH4V TGCA 5 cut(s) 100, 396, 450, 523, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 89, 275, 615
HpyF3I CTNAG 2 cut(s) 315, 690
Hsp92II CATG 5 cut(s) 221, 396, 523, 550, 638
HspAI GCGC 1 cut(s) 445
Kpn2I TCCGGA 1 cut(s) 596
Kzo9I GATC 4 cut(s) 285, 332, 438, 540
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 1 cut(s) 434
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 344, 590
MaeIII GTNAC 1 cut(s) 235
MalI GATC 4 cut(s) 287, 334, 440, 542
MboI GATC 4 cut(s) 285, 332, 438, 540
MboII GAAGA 5 cut(s) 464, 535, 634, 725, 737
MflI RGATCY 2 cut(s) 332, 438
MluCI AATT 3 cut(s) 40, 141, 580
MlyI GAGTC 2 cut(s) 287, 486
MnlI CCTC 6 cut(s) 21, 199, 244, 370, 699, 703
Mph1103I ATGCAT 1 cut(s) 398
MroI TCCGGA 1 cut(s) 596
MseI TTAA 4 cut(s) 126, 144, 362, 630
MslI CAYNNNNRTG 2 cut(s) 216, 222
MspI CCGG 2 cut(s) 8, 597
MspR9I CCNGG 1 cut(s) 280
Mva1269I GAATGC 2 cut(s) 384, 450
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 4 cut(s) 13, 89, 275, 615
NdeII GATC 4 cut(s) 285, 332, 438, 540
NlaIII CATG 5 cut(s) 221, 396, 523, 550, 638
NlaIV GGNNCC 1 cut(s) 768
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 398
NspI RCATGY 3 cut(s) 221, 396, 523
PaeI GCATGC 2 cut(s) 396, 523
PagI TCATGA 1 cut(s) 546
PciI ACATGT 1 cut(s) 217
PctI GAATGC 2 cut(s) 384, 450
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 2 cut(s) 268, 449
PleI GAGTC 2 cut(s) 287, 486
PpsI GAGTC 2 cut(s) 287, 486
PscI ACATGT 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 768
PstI CTGCAG 1 cut(s) 102
PsuI RGATCY 2 cut(s) 332, 438
RseI CAYNNNNRTG 2 cut(s) 216, 222
SaqAI TTAA 4 cut(s) 126, 144, 362, 630
SatI GCNGC 2 cut(s) 267, 448
Sau3AI GATC 4 cut(s) 285, 332, 438, 540
SchI GAGTC 2 cut(s) 287, 486
ScrFI CCNGG 1 cut(s) 280
SetI ASST 5 cut(s) 32, 208, 369, 381, 772
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 2 cut(s) 98, 558
SmiMI CAYNNNNRTG 2 cut(s) 216, 222
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SphI GCATGC 2 cut(s) 396, 523
Sse9I AATT 3 cut(s) 40, 141, 580
SsiI CCGC 1 cut(s) 266
SspMI CTAG 2 cut(s) 344, 590
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 753
TaqI TCGA 2 cut(s) 208, 708
TasI AATT 3 cut(s) 40, 141, 580
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 4 cut(s) 126, 144, 362, 630
Tru9I TTAA 4 cut(s) 126, 144, 362, 630
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 5 cut(s) 416, 443, 488, 535, 738
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 580
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 3 cut(s) 221, 396, 523
XcmI CCANNNNNNNNNTGG 2 cut(s) 128, 760
XmiI GTMKAC 1 cut(s) 508
XspI CTAG 2 cut(s) 344, 590
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.