Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001534.1

Orthogroup ID

OG0021332

Physical Location & Seq

Genomic Coordinates Reverse (-)

12812 .. 15432

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001534.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgtggctggagaagcaatctgaagtgaggtctgctcacaatttgttgctgtcttgtgatgcgattgatggtatgctggaagcactaacagcacttctgcagaaatcagcctatcgttgccatattaaatatggcagtgaaattaagaacttgagtgttttctctgcgaaaagaaggaaatcaaagtcctctggcaaagtttcagctcgacataaacatgttagtggaaaaaaagtcaccagttttggggaggattattcagttgcggcaggaatagcctggcaaatcagggactcgcttgtatctgtcaatattcagaaggctatattgggatctcaaactctagaatccttacttatattaaaggtcatttccgagcagaccgagttggaacaggcattgaatcatgtgcttaattgtacagagaagcgatgtggagtaggctattctggacagtctaccagagtttattcagaatctaagcatggtagcgataagtctgcaagttgtcgtgagaaaaggcacagagaacctcaaacacatgcctccattccaagcaagatcagtgaagttgaatgtccaaaggttcatggtcgatgctgcattgctgctacaataggttttgctcctcaagctcaggaaaggtgcttaacatccacatcagcaaagttgcttaatctagctcttaaagatgcgactgaagcttcaccacctccagcagaagcttctgatcttgccaactatatgcttgatttaatcatctcgattgaattatacttgggcagttgggctaaacctatgctggacatagggctggaaaagaaaaattttaggctagtttccggacttctacgcttcgtatgcctgaagatatttaagcatgatgatagagactggggtgacttgatgttggcatttctgcaagatatctaccctcagattgagagagaaatcgaggaagagtgtgatgaagatggaagggaaaaactggaaaaagccaaggacttgctggaacctatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Condensin2nSMC

Protein Analysis

340

Amino Acids

37.91

Weight (kDa)

7.55

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021332)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138441
rosa_multiflora	Rmu_sc0001534.1_g000005
rosa_roxburghii	Rroxscaffold_2G00106240
rosa_samantha	Rh2AG399000 Rh2BG407100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	458
AccIII	TCCGGA	1 cut(s)	842
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	826
AcuI	CTGAAG	3 cut(s)	42, 720, 887
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	403, 575, 770
AjnI	CCWGG	1 cut(s)	278
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	5 cut(s)	206, 635, 683, 704, 725
AluI	AGCT	5 cut(s)	206, 635, 683, 704, 725
Alw26I	GTCTC	1 cut(s)	885
AlwI	GGATC	1 cut(s)	340
Aor13HI	TCCGGA	1 cut(s)	842
ApeKI	GCWGC	2 cut(s)	600, 608
ApoI	RAATTY	1 cut(s)	826
AsuHPI	GGTGA	3 cut(s)	229, 699, 911
BbvI	GCAGC	2 cut(s)	587, 595
BccI	CCATC	2 cut(s)	62, 968
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	885
BfaI	CTAG	3 cut(s)	344, 680, 836
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	3 cut(s)	267, 601, 609
BlsI	GCNGC	3 cut(s)	268, 602, 610
Bme1390I	CCNGG	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	1014
BmrFI	CCNGG	1 cut(s)	280
BmrI	ACTGGG	1 cut(s)	904
BmsI	GCATC	3 cut(s)	49, 587, 682
BmuI	ACTGGG	1 cut(s)	904
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpmI	CTGGAG	2 cut(s)	29, 699
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	2 cut(s)	172, 615
BsaJI	CCNNGG	1 cut(s)	999
BsaWI	WCCGGW	1 cut(s)	842
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	3 cut(s)	240, 899, 993
Bse3DI	GCAATG	1 cut(s)	603
BseAI	TCCGGA	1 cut(s)	842
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	999
BseGI	GGATG	1 cut(s)	653
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	650, 950
BseNI	ACTGG	3 cut(s)	240, 899, 993
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	2 cut(s)	587, 595
BsiSI	CCGG	1 cut(s)	843
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	885
BsmFI	GGGAC	1 cut(s)	305
Bsp13I	TCCGGA	1 cut(s)	842
Bsp1407I	TGTACA	1 cut(s)	419
Bsp143I	GATC	3 cut(s)	332, 561, 730
BspACI	CCGC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	649, 949
BspEI	TCCGGA	1 cut(s)	842
BspLI	GGNNCC	1 cut(s)	1014
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	603
BsrGI	TGTACA	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	240, 899, 993
BssECI	CCNNGG	1 cut(s)	999
BssMI	GATC	3 cut(s)	332, 561, 730
BssT1I	CCWWGG	1 cut(s)	999
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	954
BstAUI	TGTACA	1 cut(s)	419
BstDEI	CTNAG	3 cut(s)	480, 636, 936
BstF5I	GGATG	1 cut(s)	653
BstKTI	GATC	3 cut(s)	335, 564, 733
BstMAI	GTCTC	1 cut(s)	885
BstMBI	GATC	3 cut(s)	332, 561, 730
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 89, 275, 632, 701, 861
BstNI	CCWGG	1 cut(s)	280
BstNSI	RCATGY	2 cut(s)	221, 545
BstSCI	CCNGG	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	587, 595
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BtgZI	GCGATG	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	653
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 571
Csp6I	GTAC	1 cut(s)	420
CviAII	CATG	6 cut(s)	218, 407, 485, 542, 590, 881
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	3 cut(s)	480, 636, 936
DpnI	GATC	3 cut(s)	334, 563, 732
DpnII	GATC	3 cut(s)	332, 561, 730
Eam1104I	CTCTTC	1 cut(s)	954
EarI	CTCTTC	1 cut(s)	954
Eco130I	CCWWGG	1 cut(s)	999
Eco32I	GATATC	1 cut(s)	928
Eco57I	CTGAAG	3 cut(s)	42, 720, 887
EcoRII	CCWGG	1 cut(s)	278
EcoRV	GATATC	1 cut(s)	928
EcoT14I	CCWWGG	1 cut(s)	999
ErhI	CCWWGG	1 cut(s)	999
FaeI	CATG	6 cut(s)	221, 410, 488, 545, 593, 884
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	6 cut(s)	217, 406, 484, 541, 589, 880
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	3 cut(s)	267, 601, 609
FokI	GGATG	1 cut(s)	640
Fsp4HI	GCNGC	3 cut(s)	267, 601, 609
FspBI	CTAG	3 cut(s)	344, 680, 836
GluI	GCNGC	3 cut(s)	267, 601, 609
GsuI	CTGGAG	2 cut(s)	29, 699
HapII	CCGG	1 cut(s)	843
Hin1II	CATG	6 cut(s)	221, 410, 488, 545, 593, 884
HindIII	AAGCTT	2 cut(s)	702, 723
HinfI	GANTC	4 cut(s)	293, 347, 403, 476
HpaII	CCGG	1 cut(s)	843
HphI	GGTGA	3 cut(s)	229, 699, 911
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	6 cut(s)	22, 318, 376, 475, 730, 939
Hpy188III	TCNNGA	6 cut(s)	344, 450, 512, 638, 763, 843
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	3 cut(s)	168, 313, 972
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4V	TGCA	4 cut(s)	100, 503, 603, 922
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 89, 275, 632, 701, 861
HpyF3I	CTNAG	3 cut(s)	480, 636, 936
Hsp92II	CATG	6 cut(s)	221, 410, 488, 545, 593, 884
Kpn2I	TCCGGA	1 cut(s)	842
Kzo9I	GATC	3 cut(s)	332, 561, 730
LmnI	GCTCC	1 cut(s)	631
Lsp1109I	GCAGC	2 cut(s)	587, 595
LweI	GCATC	3 cut(s)	49, 587, 682
MaeI	CTAG	3 cut(s)	344, 680, 836
MaeIII	GTNAC	2 cut(s)	235, 899
MalI	GATC	3 cut(s)	334, 563, 732
MboI	GATC	3 cut(s)	332, 561, 730
MboII	GAAGA	3 cut(s)	880, 971, 983
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	5 cut(s)	40, 141, 415, 770, 826
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	9 cut(s)	21, 199, 244, 543, 556, 639, 723, 945, 949
MroI	TCCGGA	1 cut(s)	842
MseI	TTAA	9 cut(s)	126, 144, 362, 414, 650, 675, 687, 755, 876
MslI	CAYNNNNRTG	2 cut(s)	216, 222
MspI	CCGG	1 cut(s)	843
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	6 cut(s)	13, 89, 275, 632, 701, 861
NdeII	GATC	3 cut(s)	332, 561, 730
NlaIII	CATG	6 cut(s)	221, 410, 488, 545, 593, 884
NlaIV	GGNNCC	1 cut(s)	1014
NmuCI	GTSAC	2 cut(s)	235, 899
NspI	RCATGY	2 cut(s)	221, 545
PciI	ACATGT	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	347, 403, 476
PkrI	GCNGC	3 cut(s)	268, 602, 610
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PscI	ACATGT	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	1014
PstI	CTGCAG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	2 cut(s)	216, 222
SaqAI	TTAA	9 cut(s)	126, 144, 362, 414, 650, 675, 687, 755, 876
SatI	GCNGC	3 cut(s)	267, 601, 609
Sau3AI	GATC	3 cut(s)	332, 561, 730
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	280
SfaNI	GCATC	3 cut(s)	49, 587, 682
SfcI	CTRYAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	216, 222
SmlI	CTYRAG	2 cut(s)	151, 630
SmoI	CTYRAG	2 cut(s)	151, 630
Sse9I	AATT	5 cut(s)	40, 141, 415, 770, 826
SsiI	CCGC	1 cut(s)	266
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	344, 680, 836
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	999
TaaI	ACNGT	1 cut(s)	456
TaqI	TCGA	4 cut(s)	208, 595, 764, 954
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	5 cut(s)	40, 141, 415, 770, 826
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	347, 403, 476
Tru1I	TTAA	9 cut(s)	126, 144, 362, 414, 650, 675, 687, 755, 876
Tru9I	TTAA	9 cut(s)	126, 144, 362, 414, 650, 675, 687, 755, 876
TscAI	CASTG	2 cut(s)	142, 571
TseFI	GTSAC	2 cut(s)	235, 899
TseI	GCWGC	2 cut(s)	600, 608
Tsp45I	GTSAC	2 cut(s)	235, 899
TspDTI	ATGAA	2 cut(s)	578, 984
TspRI	CASTG	2 cut(s)	142, 571
XapI	RAATTY	1 cut(s)	826
XbaI	TCTAGA	1 cut(s)	343
XceI	RCATGY	2 cut(s)	221, 545
XcmI	CCANNNNNNNNNTGG	2 cut(s)	128, 1006
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	3 cut(s)	344, 680, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.