RchiOBHm_Chr2g0163721

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
79076546 .. 79077579
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53185

Sequence Viewer

Length: 306 bp
ATGAAAATCCATGCAAGTGTGCTACGGATTGTCATACCAGCTTGTAAAGTCTCTGCTCTACGCAATTTTTGTTGTGCAGCTCAAAGAGAGAAGATTGTGGATAAACAGTATCATAGCCTTATTGAGCAACTAGAAGCAAAACAGGCACAAGCAGAAGGCCTAGTTGGTGAAATTCATTTGAAAGAGATGGAGCTAGAAAGATTAAATGGATTGTGGAGGAAGCTTGAAAGCAGCAACAATGAGATGAGTGCTGCTAGAAATCGGTTTGGACGAAGTACATCTGAAAGAGGAATCTGCTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.53

Weight (kDa)

9.07

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019365)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 1 cut(s) 277
AgsI TTSAA 2 cut(s) 181, 227
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 4 cut(s) 41, 80, 193, 223
AluI AGCT 4 cut(s) 41, 80, 193, 223
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 3 cut(s) 77, 231, 251
ApoI RAATTY 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 179
BbvI GCAGC 3 cut(s) 89, 238, 243
BccI CCATC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 4 cut(s) 131, 161, 194, 255
BisI GCNGC 3 cut(s) 78, 232, 252
BlsI GCNGC 3 cut(s) 79, 233, 253
BseXI GCAGC 3 cut(s) 89, 238, 243
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 159
BspANI GGCC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 89, 238, 243
BsuRI GGCC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 11
CviJI RGCY 6 cut(s) 41, 80, 117, 159, 193, 223
CviKI_1 RGCY 6 cut(s) 41, 80, 117, 159, 193, 223
CviQI GTAC 1 cut(s) 276
Eco147I AGGCCT 1 cut(s) 159
FaeI CATG 1 cut(s) 14
FaiI YATR 3 cut(s) 12, 35, 114
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 78, 232, 252
Fsp4HI GCNGC 3 cut(s) 78, 232, 252
FspBI CTAG 4 cut(s) 131, 161, 194, 255
GluI GCNGC 3 cut(s) 78, 232, 252
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 291
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 283, 305
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 14, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 14
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 51, 128
Lsp1109I GCAGC 3 cut(s) 89, 238, 243
MaeI CTAG 4 cut(s) 131, 161, 194, 255
MboII GAAGA 2 cut(s) 103, 292
MluCI AATT 2 cut(s) 64, 171
MnlI CCTC 2 cut(s) 210, 281
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 14
PceI AGGCCT 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 3 cut(s) 79, 233, 253
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 3 cut(s) 78, 232, 252
SetI ASST 4 cut(s) 43, 82, 195, 225
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 2 cut(s) 64, 171
SseBI AGGCCT 1 cut(s) 159
SspMI CTAG 4 cut(s) 131, 161, 194, 255
StuI AGGCCT 1 cut(s) 159
TaaI ACNGT 1 cut(s) 108
TasI AATT 2 cut(s) 64, 171
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseI GCWGC 3 cut(s) 77, 231, 251
TspDTI ATGAA 2 cut(s) 17, 164
TspGWI ACGGA 1 cut(s) 40
XapI RAATTY 1 cut(s) 171
XspI CTAG 4 cut(s) 131, 161, 194, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.