RchiOBHm_Chr2g0174801

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
87293881 .. 87295002
1122 bp
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UTR
Exon/CDS
Intron
PRQ54194

Sequence Viewer

Length: 228 bp
ATGTCCATCTCACGGTGGTTAAATTATGCGCTTCCCAAAGGCGCGTCAGTGGTCGGGTCATGTCGGGCTTCTAACCGGCTTGACTCAGGTCGGGCAGCTTTTAAACGTGCCGGACTAGTGTCGTGCTCTGGCCTAGCGGCTCGTTTGCCACCGTTATTTTGGAGTAGAATGTCATGCACCAAAGGCTTCATCTTTACATCCACCTACCCATTAGTTTTCAACACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.15

Weight (kDa)

10.93

Isoelectric Point (pI)

65.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021348)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174801
rosa_multiflora Rmu_sc0001228.1_g000003 Rmu_sc0006250.1_g000002
rosa_rugosa Rorug05G0574300
rosa_samantha Rh6BG083000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 220
AhlI ACTAGT 1 cut(s) 115
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw21I GWGCWC 1 cut(s) 128
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 31, 44
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 14
BcuI ACTAGT 1 cut(s) 115
BfaI CTAG 2 cut(s) 116, 134
BisI GCNGC 2 cut(s) 96, 138
BlsI GCNGC 2 cut(s) 97, 139
BoxI GACNNNNGTC 2 cut(s) 87, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 75
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 76, 111
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 128
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 98
BspFNI CGCG 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 15, 153
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 2 cut(s) 31, 44
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstPAI GACNNNNGTC 2 cut(s) 87, 118
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 107
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 2 cut(s) 31, 44
Cfr10I RCCGGY 1 cut(s) 75
CseI GACGC 1 cut(s) 33
CviAII CATG 2 cut(s) 60, 174
CviJI RGCY 6 cut(s) 68, 79, 98, 132, 140, 186
CviKI_1 RGCY 6 cut(s) 68, 79, 98, 132, 140, 186
DdeI CTNAG 1 cut(s) 85
DraI TTTAAA 1 cut(s) 103
FaeI CATG 2 cut(s) 63, 177
FaiI YATR 3 cut(s) 27, 61, 175
FatI CATG 2 cut(s) 59, 173
Fnu4HI GCNGC 2 cut(s) 96, 138
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 96, 138
FspBI CTAG 2 cut(s) 116, 134
GlaI GCGC 2 cut(s) 30, 43
GluI GCNGC 2 cut(s) 96, 138
HaeIII GGCC 1 cut(s) 132
HapII CCGG 2 cut(s) 76, 111
HgaI GACGC 1 cut(s) 33
HhaI GCGC 2 cut(s) 31, 44
Hin1II CATG 2 cut(s) 63, 177
Hin6I GCGC 2 cut(s) 29, 42
HinP1I GCGC 2 cut(s) 29, 42
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 76, 111
HpyCH4III ACNGT 2 cut(s) 15, 153
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 2 cut(s) 63, 177
HspAI GCGC 2 cut(s) 29, 42
LpnPI CCDG 4 cut(s) 72, 89, 114, 124
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 2 cut(s) 116, 134
MaeII ACGT 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 77
MseI TTAA 2 cut(s) 20, 102
MspI CCGG 2 cut(s) 76, 111
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 183
NlaIII CATG 2 cut(s) 63, 177
PkrI GCNGC 2 cut(s) 97, 139
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PshAI GACNNNNGTC 2 cut(s) 87, 118
SaqAI TTAA 2 cut(s) 20, 102
SatI GCNGC 2 cut(s) 96, 138
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 128
SetI ASST 5 cut(s) 91, 100, 109, 206, 227
SpeI ACTAGT 1 cut(s) 115
Sse9I AATT 1 cut(s) 22
SsiI CCGC 1 cut(s) 137
SspMI CTAG 2 cut(s) 116, 134
TaaI ACNGT 2 cut(s) 15, 153
TaiI ACGT 1 cut(s) 109
TasI AATT 1 cut(s) 22
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 20, 102
Tru9I TTAA 2 cut(s) 20, 102
TscAI CASTG 1 cut(s) 54
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 178
TspRI CASTG 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XspI CTAG 2 cut(s) 116, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.