Rmu_sc0006250.1_g000002

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006250.1
OG0021348
Physical Location & Seq
Forward (+)
8389 .. 8811
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006250.1_g000002.1.cds

Sequence Viewer

Length: 423 bp
atgctcgggtcgtgctgggccactaacgggcttgggctgttccagacctcttttaagcttgtcgggcccgtgccgtgctcgtgcttagcggtccgtttgccacctctatctaacatgactcatctcaaaaccctaattctgtatctgaaaactctgtccctcaagactgtgcaattgaagtccaaggctgtgtctagttttattttagggtgcccatccatcgagtatttgtcactatcttcatatttaaattttgatggcttcaagagtctggaaattgaagtttcgagttctagtctcaaatccttagaagttactggttgtaattgccaaggtgttgttatattcaaatgtgagaaccttcaatctctttcctttgttttagaatttctgcgacttaggagcctggaagagttggtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

140

Amino Acids

15.36

Weight (kDa)

8.5

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021348)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174801
rosa_multiflora Rmu_sc0001228.1_g000003 Rmu_sc0006250.1_g000002
rosa_rugosa Rorug05G0574300
rosa_samantha Rh6BG083000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AciI CCGC 1 cut(s) 89
AcsI RAATTY 2 cut(s) 250, 386
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 5 cut(s) 178, 265, 281, 349, 365
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 2 cut(s) 18, 65
ApaI GGGCCC 1 cut(s) 69
ApoI RAATTY 2 cut(s) 250, 386
AspS9I GGNCC 4 cut(s) 18, 65, 66, 91
AvaI CYCGRG 1 cut(s) 5
AvaII GGWCC 1 cut(s) 91
BaeGI GKGCMC 2 cut(s) 69, 215
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 69
BauI CACGAG 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 80
BccI CCATC 3 cut(s) 223, 227, 251
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 2 cut(s) 195, 294
BlpI GCTNAGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 4 cut(s) 18, 65, 66, 91
BmiI GGNNCC 3 cut(s) 67, 212, 404
BmrFI CCNGG 1 cut(s) 407
Bpu1102I GCTNAGC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 183, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 183, 331
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 322
BseSI GKGCMC 2 cut(s) 69, 215
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 2 cut(s) 20, 67
BshNI GGYRCC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 2 cut(s) 20, 67
BsoBI CYCGRG 1 cut(s) 5
Bsp120I GGGCCC 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 69, 80, 215
Bsp1720I GCTNAGC 1 cut(s) 85
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 20, 67
BspLI GGNNCC 3 cut(s) 67, 212, 404
BspT107I GGYRCC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 183, 331
BssSI CACGAG 1 cut(s) 79
BssT1I CCWWGG 2 cut(s) 183, 331
Bst2BI CACGAG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 405
BstDEI CTNAG 3 cut(s) 85, 307, 398
BstF5I GGATG 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 302
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstSLI GKGCMC 2 cut(s) 69, 215
BsuRI GGCC 2 cut(s) 20, 67
BtsCI GGATG 1 cut(s) 215
Cfr13I GGNCC 4 cut(s) 18, 65, 66, 91
CpoI CGGWCCG 1 cut(s) 91
CspI CGGWCCG 1 cut(s) 91
CviAII CATG 1 cut(s) 115
CviJI RGCY 8 cut(s) 20, 31, 37, 58, 67, 188, 261, 405
CviKI_1 RGCY 8 cut(s) 20, 31, 37, 58, 67, 188, 261, 405
DdeI CTNAG 3 cut(s) 85, 307, 398
DraI TTTAAA 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 183, 331
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 183, 331
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 183, 331
FaeI CATG 1 cut(s) 118
FaiI YATR 3 cut(s) 116, 244, 344
FaqI GGGAC 1 cut(s) 142
FatI CATG 1 cut(s) 114
FokI GGATG 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 69
FspBI CTAG 2 cut(s) 195, 294
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 2 cut(s) 20, 67
Hin1II CATG 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 118, 268
Hpy188I TCNGA 2 cut(s) 147, 422
Hpy188III TCNNGA 4 cut(s) 43, 163, 265, 272
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 3 cut(s) 85, 307, 398
Hsp92II CATG 1 cut(s) 118
LmnI GCTCC 1 cut(s) 402
LpnPI CCDG 5 cut(s) 56, 257, 303, 392, 419
MaeI CTAG 2 cut(s) 195, 294
MaeIII GTNAC 2 cut(s) 231, 313
MboII GAAGA 2 cut(s) 231, 422
MfeI CAATTG 1 cut(s) 173
MhlI GDGCHC 3 cut(s) 69, 80, 215
MluCI AATT 6 cut(s) 135, 173, 250, 276, 325, 386
MlyI GAGTC 2 cut(s) 112, 277
MnlI CCTC 3 cut(s) 58, 114, 170
MseI TTAA 2 cut(s) 54, 248
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 64
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 3 cut(s) 67, 212, 404
NmuCI GTSAC 1 cut(s) 231
PleI GAGTC 2 cut(s) 112, 276
PpsI GAGTC 2 cut(s) 112, 276
Psp6I CCWGG 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 3 cut(s) 67, 212, 404
PspOMI GGGCCC 1 cut(s) 65
PspPI GGNCC 4 cut(s) 18, 65, 66, 91
Rsr2I CGGWCCG 1 cut(s) 91
RsrII CGGWCCG 1 cut(s) 91
SaqAI TTAA 2 cut(s) 54, 248
Sau96I GGNCC 4 cut(s) 18, 65, 66, 91
SchI GAGTC 2 cut(s) 112, 277
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 3 cut(s) 69, 80, 215
SetI ASST 5 cut(s) 50, 60, 106, 337, 363
SinI GGWCC 1 cut(s) 91
SmiI ATTTAAAT 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 6 cut(s) 135, 173, 250, 276, 325, 386
SsiI CCGC 1 cut(s) 89
SspMI CTAG 2 cut(s) 195, 294
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 2 cut(s) 183, 331
SwaI ATTTAAAT 1 cut(s) 249
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 2 cut(s) 222, 287
TasI AATT 6 cut(s) 135, 173, 250, 276, 325, 386
Tru1I TTAA 2 cut(s) 54, 248
Tru9I TTAA 2 cut(s) 54, 248
TseFI GTSAC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 2 cut(s) 250, 386
XspI CTAG 2 cut(s) 195, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.