Rorug05G0574300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0021348
Physical Location & Seq
Forward (+)
76951599 .. 76955168
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0574300.1

Sequence Viewer

Length: 693 bp
ATGCAAAACATTTTACGGGTTGTTTTGGCGCCACTGTTCTGTTGTCTGTTGTTTAGTGCTATCTTCATCTGTTATTGTGATTTAGATTCTCAGAACAGTGTGCTGTCGAATTCGTCAAGTGGTTTGGATTCAGTTATGGCTCCGAAGACCCGGGCGACAAGGAAAAAAAGGTTCTTAGAAGGAGATTGCAGTGCTGCTAATTTATACTGTGCTGAAAGTCATGATAAAAGTTTATCAATTCGGGGAGATATGCGAGAAATGAGCAATGATCAAACTTTCGTTGCCGCTATAGCTGAAAGCCCTTTTTCTCATGAAGACAGAACAGTGGTGCAGCCAACAACAAAAAGAAAACGGGTTTTGAAAAATGTAGACGGATTGGGACATGGCGACAAACAAGTTAGAAATAATCAACAAAATGTTAATATAGCTGCAAACCAAGGTGTTACTGGAAATCAGGATTTGTTTGCTGCTATAAATTCAGACAATGACACTACAAGTGCAATGGTCGAGGGCTCATCTACTTTCGGTCAGGCGTTGTATCAAAGAAGCAAACAAGCGCATGTTTTTGGTCAGAAGAAGCAAACAAACAACCGTCTAAAAAGGCACATCTCATCTATACCAATTGTTGCAAAAATGGACAAGTTAAACTTCAACAACCCAATTCAGCACCAAGTTTTCTTCAGAAAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

230

Amino Acids

25.63

Weight (kDa)

9.41

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021348)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174801
rosa_multiflora Rmu_sc0001228.1_g000003 Rmu_sc0006250.1_g000002
rosa_rugosa Rorug05G0574300
rosa_samantha Rh6BG083000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 369
AciI CCGC 1 cut(s) 285
AcsI RAATTY 3 cut(s) 109, 475, 686
AcuI CTGAAG 1 cut(s) 664
AcyI GRCGYC 1 cut(s) 29
AgsI TTSAA 2 cut(s) 361, 652
AluBI AGCT 2 cut(s) 293, 428
AluI AGCT 2 cut(s) 293, 428
Ama87I CYCGRG 1 cut(s) 150
ApeKI GCWGC 4 cut(s) 194, 331, 428, 467
ApoI RAATTY 3 cut(s) 109, 475, 686
AspLEI GCGC 2 cut(s) 31, 559
AsuC2I CCSGG 2 cut(s) 151, 152
AvaI CYCGRG 1 cut(s) 150
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 515
BbsI GAAGAC 2 cut(s) 152, 321
BbvI GCAGC 4 cut(s) 181, 343, 415, 454
BclI TGATCA 1 cut(s) 268
BcnI CCSGG 2 cut(s) 151, 152
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 5 cut(s) 195, 285, 332, 429, 468
BlsI GCNGC 5 cut(s) 196, 286, 333, 430, 469
Bme1390I CCNGG 2 cut(s) 151, 152
BmeT110I CYCGRG 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 30, 141
BmrFI CCNGG 2 cut(s) 151, 152
BpiI GAAGAC 2 cut(s) 152, 321
BpuMI CCSGG 2 cut(s) 151, 152
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 150, 436
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 2 cut(s) 271, 507
BseDI CCNNGG 2 cut(s) 150, 436
BseMI GCAATG 2 cut(s) 271, 507
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 451
BseXI GCAGC 4 cut(s) 181, 343, 415, 454
BsgI GTGCAG 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 1 cut(s) 151
BslFI GGGAC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 515
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 103
BspHI TCATGA 2 cut(s) 220, 310
BspLI GGNNCC 2 cut(s) 30, 141
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 2 cut(s) 271, 507
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 150, 436
BssMI GATC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 436
Bst4CI ACNGT 5 cut(s) 36, 98, 209, 325, 593
BstACI GRCGYC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 90, 175
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 2 cut(s) 31, 559
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 2 cut(s) 149, 150
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 4 cut(s) 181, 343, 415, 454
BstV2I GAAGAC 2 cut(s) 152, 321
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 4 cut(s) 32, 103, 196, 330
CciI TCATGA 2 cut(s) 220, 310
CfoI GCGC 2 cut(s) 31, 559
Cfr9I CCCGGG 1 cut(s) 150
CviAII CATG 4 cut(s) 221, 311, 383, 560
CviJI RGCY 6 cut(s) 140, 293, 300, 334, 428, 513
CviKI_1 RGCY 6 cut(s) 140, 293, 300, 334, 428, 513
DdeI CTNAG 2 cut(s) 90, 175
DinI GGCGCC 1 cut(s) 30
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 664
Eco88I CYCGRG 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 515
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 4 cut(s) 224, 314, 386, 563
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FaqI GGGAC 1 cut(s) 393
FatI CATG 4 cut(s) 220, 310, 382, 559
FbaI TGATCA 1 cut(s) 268
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 5 cut(s) 195, 285, 332, 429, 468
FriOI GRGCYC 1 cut(s) 515
Fsp4HI GCNGC 5 cut(s) 195, 285, 332, 429, 468
GlaI GCGC 2 cut(s) 30, 558
GluI GCNGC 5 cut(s) 195, 285, 332, 429, 468
HaeII RGCGCY 1 cut(s) 32
HapII CCGG 1 cut(s) 151
HhaI GCGC 2 cut(s) 31, 559
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 4 cut(s) 224, 314, 386, 563
Hin6I GCGC 2 cut(s) 29, 557
HinP1I GCGC 2 cut(s) 29, 557
HinfI GANTC 2 cut(s) 86, 128
HpaII CCGG 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 5 cut(s) 93, 144, 481, 573, 683
Hpy188III TCNNGA 3 cut(s) 221, 311, 455
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 5 cut(s) 36, 98, 209, 325, 593
HpyCH4V TGCA 6 cut(s) 4, 189, 331, 431, 500, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 90, 175
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 4 cut(s) 224, 314, 386, 563
HspAI GCGC 2 cut(s) 29, 557
KasI GGCGCC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 4 cut(s) 164, 432, 440, 515
Lsp1109I GCAGC 4 cut(s) 181, 343, 415, 454
MaeIII GTNAC 1 cut(s) 442
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 5 cut(s) 55, 157, 326, 586, 670
MfeI CAATTG 1 cut(s) 621
MhlI GDGCHC 1 cut(s) 515
MluCI AATT 7 cut(s) 109, 199, 237, 475, 621, 660, 686
Mly113I GGCGCC 1 cut(s) 29
MnlI CCTC 1 cut(s) 502
MseI TTAA 2 cut(s) 420, 644
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 151, 152
MunI CAATTG 1 cut(s) 621
MwoI GCNNNNNNNGC 1 cut(s) 290
NarI GGCGCC 1 cut(s) 29
NciI CCSGG 2 cut(s) 151, 152
NdeII GATC 1 cut(s) 268
NlaIII CATG 4 cut(s) 224, 314, 386, 563
NlaIV GGNNCC 2 cut(s) 30, 141
NspI RCATGY 1 cut(s) 563
PagI TCATGA 2 cut(s) 220, 310
PfeI GAWTC 2 cut(s) 86, 128
PkrI GCNGC 5 cut(s) 196, 286, 333, 430, 469
PluTI GGCGCC 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 30, 141
SaqAI TTAA 2 cut(s) 420, 644
SatI GCNGC 5 cut(s) 195, 285, 332, 429, 468
Sau3AI GATC 1 cut(s) 268
ScrFI CCNGG 2 cut(s) 151, 152
SduI GDGCHC 1 cut(s) 515
SetI ASST 4 cut(s) 173, 295, 430, 442
SfcI CTRYAG 1 cut(s) 288
SfoI GGCGCC 1 cut(s) 30
SmaI CCCGGG 1 cut(s) 152
Sse9I AATT 7 cut(s) 109, 199, 237, 475, 621, 660, 686
SsiI CCGC 1 cut(s) 285
SspDI GGCGCC 1 cut(s) 28
StyD4I CCNGG 2 cut(s) 149, 150
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 5 cut(s) 36, 98, 209, 325, 593
TaqI TCGA 2 cut(s) 107, 507
TaqII GACCGA 1 cut(s) 515
TasI AATT 7 cut(s) 109, 199, 237, 475, 621, 660, 686
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 2 cut(s) 86, 128
Tru1I TTAA 2 cut(s) 420, 644
Tru9I TTAA 2 cut(s) 420, 644
TscAI CASTG 4 cut(s) 39, 103, 196, 330
TseI GCWGC 4 cut(s) 194, 331, 428, 467
TspDTI ATGAA 2 cut(s) 55, 327
TspGWI ACGGA 1 cut(s) 387
TspMI CCCGGG 1 cut(s) 150
TspRI CASTG 4 cut(s) 39, 103, 196, 330
XapI RAATTY 3 cut(s) 109, 475, 686
XceI RCATGY 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmaI CCCGGG 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.