Rh6BG083000

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0021348
Physical Location & Seq
Reverse (-)
13002723 .. 13003448
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG083000.1

Sequence Viewer

Length: 726 bp
ATGGCTACCAAAGCAAAAAGACGCAGCAACATGCCAAAGGACCCTAACTCAACTAAAAAGATCAGAAAGCAAAGCCAACGAAAGAAAGATCATAATGTTCAGAACCCCATGGCCGTGGACGATGTTATCCATCAAATTCTCCCTCTCCTTCCCACCAAATCTGCCGTCCGAATGAGCTCTCTTTCAAAGCAATGGCAAGCTGTATGGTTTTCCCTCTCTGTATTAGATTTCGATGAAGGCGATCAGGCGCATGATGGTGACAATAAACTTGAGAAACTTCAACATACAAACTTCATCAACATCTTGGATAGGTATTTCTGGAATGCAAAAAACAAGAAGCTCTTAGAAAAGTTCAGGCTTCGCATGACTACGTTCAGTATAGTAAGAGACTCTGTTGTGGTAAATAAGTGTTTGAGTTTTGCAGTTGGGAGAAGCCTCAAAGAATTAGACAACAGCCTAAGACCTAAGCATAGGCCGTTCCTTTGCTGTTTATCACTTCAGACCCTTCTTGATGCAAAATCTTTAACTACCTTAAGTTTGGAGTTTGTGAGAATAAAGGTGGATGACAATACTAGTTATTACCTTGAAACCCTTCCGTCTTTGAAAAGTTTGTCACTCAACAGCGTACAACTGATTTCAGAGGCTTTGTTTCTTTTAGTTTCCGGTGGCCCTCTTCGATTGAGTATTTGTCACTATGCTCATATTCTAGTTTCCATGGCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

241

Amino Acids

27.6

Weight (kDa)

9.83

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021348)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174801
rosa_multiflora Rmu_sc0001228.1_g000003 Rmu_sc0006250.1_g000002
rosa_rugosa Rorug05G0574300
rosa_samantha Rh6BG083000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 482
AfaI GTAC 1 cut(s) 627
AflII CTTAAG 1 cut(s) 532
AgsI TTSAA 4 cut(s) 186, 281, 587, 604
AhlI ACTAGT 1 cut(s) 572
AluBI AGCT 3 cut(s) 177, 200, 340
AluI AGCT 3 cut(s) 177, 200, 340
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 381
AoxI GGCC 3 cut(s) 111, 473, 667
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 150, 182
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 40, 668
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 36
BccI CCATC 2 cut(s) 138, 248
BceAI ACGGC 3 cut(s) 98, 149, 460
BcoDI GTCTC 1 cut(s) 381
BcuI ACTAGT 1 cut(s) 572
BfaI CTAG 2 cut(s) 573, 707
BfrI CTTAAG 1 cut(s) 532
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 40, 668
BmiI GGNNCC 1 cut(s) 42
BmsI GCATC 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 108, 114, 714
BsaWI WCCGGW 1 cut(s) 662
Bse3DI GCAATG 1 cut(s) 197
BseDI CCNNGG 3 cut(s) 108, 114, 714
BseGI GGATG 1 cut(s) 568
BseMI GCAATG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 3 cut(s) 113, 475, 669
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 663
BsmAI GTCTC 1 cut(s) 381
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 3 cut(s) 113, 475, 669
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 60, 88, 241
Bsp19I CCATGG 2 cut(s) 108, 714
BspANI GGCC 3 cut(s) 113, 475, 669
BspLI GGNNCC 1 cut(s) 42
BspTI CTTAAG 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 108, 114, 714
BssMI GATC 3 cut(s) 60, 88, 241
BssT1I CCWWGG 2 cut(s) 108, 714
Bst6I CTCTTC 1 cut(s) 678
BstAFI CTTAAG 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 3 cut(s) 343, 458, 465
BstDSI CCRYGG 3 cut(s) 108, 114, 714
BstF5I GGATG 1 cut(s) 568
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 63, 91, 244
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 3 cut(s) 60, 88, 241
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 3 cut(s) 113, 475, 669
BtgI CCRYGG 3 cut(s) 108, 114, 714
BtsCI GGATG 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 40, 668
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 626
CviAII CATG 5 cut(s) 31, 109, 251, 364, 715
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 3 cut(s) 343, 458, 465
DpnI GATC 3 cut(s) 62, 90, 243
DpnII GATC 3 cut(s) 60, 88, 241
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 108, 714
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 108, 714
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 2 cut(s) 108, 714
FaeI CATG 5 cut(s) 34, 112, 254, 367, 718
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FatI CATG 5 cut(s) 30, 108, 250, 363, 714
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 2 cut(s) 573, 707
GlaI GCGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 3 cut(s) 113, 475, 669
HapII CCGG 1 cut(s) 663
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 250
Hin1II CATG 5 cut(s) 34, 112, 254, 367, 718
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 1 cut(s) 389
HpaII CCGG 1 cut(s) 663
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 5 cut(s) 65, 102, 170, 501, 640
Hpy188III TCNNGA 2 cut(s) 319, 509
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 4 cut(s) 158, 230, 515, 602
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 3 cut(s) 326, 422, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 343, 458, 465
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 5 cut(s) 34, 112, 254, 367, 718
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 3 cut(s) 60, 88, 241
LpnPI CCDG 4 cut(s) 230, 304, 340, 676
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 502
MaeI CTAG 2 cut(s) 573, 707
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 3 cut(s) 257, 612, 689
MalI GATC 3 cut(s) 62, 90, 243
MboI GATC 3 cut(s) 60, 88, 241
MboII GAAGA 1 cut(s) 665
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 135, 443
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 5 cut(s) 153, 224, 446, 634, 681
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 2 cut(s) 524, 533
MslI CAYNNNNRTG 2 cut(s) 113, 255
MspCI CTTAAG 1 cut(s) 532
MspI CCGG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 2 cut(s) 108, 714
NdeII GATC 3 cut(s) 60, 88, 241
NlaIII CATG 5 cut(s) 34, 112, 254, 367, 718
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 3 cut(s) 257, 612, 689
NspI RCATGY 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 591
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PpuMI RGGWCCY 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 2 cut(s) 40, 668
PspPPI RGGWCCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
RseI CAYNNNNRTG 2 cut(s) 113, 255
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 524, 533
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 3 cut(s) 60, 88, 241
Sau96I GGNCC 2 cut(s) 40, 668
SchI GAGTC 1 cut(s) 383
SduI GDGCHC 1 cut(s) 179
SetI ASST 9 cut(s) 179, 202, 314, 342, 374, 466, 533, 561, 585
SfaNI GCATC 1 cut(s) 502
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 2 cut(s) 113, 255
SmlI CTYRAG 2 cut(s) 269, 532
SmoI CTYRAG 2 cut(s) 269, 532
SpeI ACTAGT 1 cut(s) 572
Sse9I AATT 2 cut(s) 135, 443
SspMI CTAG 2 cut(s) 573, 707
SstI GAGCTC 1 cut(s) 179
StyI CCWWGG 2 cut(s) 108, 714
TaiI ACGT 1 cut(s) 374
TaqI TCGA 3 cut(s) 231, 676, 721
TasI AATT 2 cut(s) 135, 443
Tru1I TTAA 2 cut(s) 524, 533
Tru9I TTAA 2 cut(s) 524, 533
TseFI GTSAC 3 cut(s) 257, 612, 689
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 3 cut(s) 257, 612, 689
TspDTI ATGAA 2 cut(s) 249, 283
TspGWI ACGGA 1 cut(s) 585
Vha464I CTTAAG 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 2 cut(s) 573, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.