Rmu_sc0001228.1_g000003

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001228.1
OG0021348
Physical Location & Seq
Reverse (-)
25838 .. 28381
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001228.1_g000003.1.cds

Sequence Viewer

Length: 1101 bp
atgccaaaggaccctaactcaactaaaaagatcagaaagcaaagccaacggaagaaagatcatcatgttcagaaccccatggccgtggacgatgttatccatcaaattctccctctccttcccaccaaatccgccgtccgaatgagctctctttcaaagcaatggcaagctgtatggttttccctctctgtattagatttcgatgaaggcgatcaggcgcatgatggtgacaataagcttgagaaacctcaacatacaaacttcatcaacatcttggataggtatttccggaatgcaaaaaacaagaagctcttagaaaagttcaggcttcgcatgactacgttcagtatagtaagagactctgttgtggtaaataagtgtttgagttttgcagttgggagaagcctcaaagaattagacaacagcctaagacctaagcataggccgttcctttgctgtttatcacttcagacccttcttgatgcaaaatctttaactaccttaagttcggagtttgtgagaataaaggtggatgacaatactagttaccttgaaacccttccgtctttgaaaagtttgtcactcaagagtgtacaactgatttcagaggctttgtttcttttagtttcgggtccctccgtcaagcaacctttaattttagacgttaactctctgacgtggcgttccaactcagcaaaagtggggcccacatggaagtcaaattcccaaaatgaccctggctctttaatatcttattttgactgccttccccgagatctactctcccttgttttcttctcttcttcgtttctgttgaagctcggagacggccgctcagcccacctccgctgctccccaccgacaatccgcggcactacctcgtctgcaaagccacccaaatcatcctcgtctgctctgcctccaatccttaaatccctaaacgcggaacgccgacctcgccctcccaatcatcctctagccgccgctccacgtcacccctctccgacacccactaccgcgaccttatcttccctatcttctgcaaaaccccctcagctttccgcacccgtgactcttcctcccacagcttctaccctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

366

Amino Acids

40.53

Weight (kDa)

10.01

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021348)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174801
rosa_multiflora Rmu_sc0001228.1_g000003 Rmu_sc0006250.1_g000002
rosa_rugosa Rorug05G0574300
rosa_samantha Rh6BG083000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 834, 986
AccII CGCG 3 cut(s) 870, 944, 1019
AccIII TCCGGA 1 cut(s) 288
AcoI YGGCCR 2 cut(s) 81, 829
AcsI RAATTY 2 cut(s) 105, 721
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 1 cut(s) 594
AfiI CCNNNNNNNGG 1 cut(s) 943
AflII CTTAAG 1 cut(s) 502
AgsI TTSAA 4 cut(s) 156, 554, 571, 817
AhlI ACTAGT 1 cut(s) 542
AjiI CACGTC 2 cut(s) 678, 992
AjnI CCWGG 1 cut(s) 736
AluBI AGCT 7 cut(s) 147, 170, 238, 310, 820, 1057, 1088
AluI AGCT 7 cut(s) 147, 170, 238, 310, 820, 1057, 1088
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 351, 819
Ama87I CYCGRG 1 cut(s) 771
Aor13HI TCCGGA 1 cut(s) 288
AoxI GGCC 4 cut(s) 81, 443, 704, 829
ApaI GGGCCC 1 cut(s) 708
ApeKI GCWGC 1 cut(s) 849
ApoI RAATTY 2 cut(s) 105, 721
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 558
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 4 cut(s) 10, 632, 704, 705
AsuHPI GGTGA 2 cut(s) 239, 986
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 2 cut(s) 10, 632
BaeGI GKGCMC 1 cut(s) 708
BanII GRGCYC 2 cut(s) 149, 708
Bbv12I GWGCWC 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 1053
BbvI GCAGC 1 cut(s) 836
BccI CCATC 2 cut(s) 108, 218
BceAI ACGGC 4 cut(s) 68, 119, 430, 844
BciT130I CCWGG 1 cut(s) 738
BcoDI GTCTC 2 cut(s) 351, 819
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 2 cut(s) 543, 977
BfrI CTTAAG 1 cut(s) 502
BglII AGATCT 1 cut(s) 775
BisI GCNGC 5 cut(s) 832, 850, 871, 981, 984
BlpI GCTNAGC 1 cut(s) 835
BlsI GCNGC 5 cut(s) 833, 851, 872, 982, 985
Bme1390I CCNGG 1 cut(s) 738
Bme18I GGWCC 2 cut(s) 10, 632
BmeT110I CYCGRG 1 cut(s) 771
BmgBI CACGTC 2 cut(s) 678, 992
BmgT120I GGNCC 4 cut(s) 10, 632, 704, 705
BmiI GGNNCC 5 cut(s) 12, 633, 634, 705, 706
BmrFI CCNGG 1 cut(s) 738
BmsI GCATC 1 cut(s) 472
BplI GAGNNNNNCTC 2 cut(s) 765, 797
Bpu10I CCTNAGC 2 cut(s) 435, 1053
Bpu1102I GCTNAGC 1 cut(s) 835
BpuEI CTTGAG 2 cut(s) 260, 569
BsaJI CCNNGG 4 cut(s) 78, 84, 736, 868
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 1063, 1093
Bsc4I CCNNNNNNNGG 1 cut(s) 943
Bse3DI GCAATG 1 cut(s) 167
BseAI TCCGGA 1 cut(s) 288
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 4 cut(s) 78, 84, 736, 868
BseGI GGATG 3 cut(s) 538, 902, 970
BseLI CCNNNNNNNGG 1 cut(s) 943
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 3 cut(s) 705, 849, 1067
BseSI GKGCMC 1 cut(s) 708
BseX3I CGGCCG 1 cut(s) 829
BseXI GCAGC 1 cut(s) 836
Bsh1236I CGCG 3 cut(s) 870, 944, 1019
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 4 cut(s) 83, 445, 706, 831
BsiEI CGRYCG 1 cut(s) 832
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 1 cut(s) 943
BsmAI GTCTC 2 cut(s) 351, 819
BsmBI CGTCTC 1 cut(s) 819
BsmFI GGGAC 1 cut(s) 618
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 4 cut(s) 83, 445, 706, 831
BsoBI CYCGRG 1 cut(s) 771
Bsp120I GGGCCC 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 149, 708
Bsp13I TCCGGA 1 cut(s) 288
Bsp1407I TGTACA 1 cut(s) 592
Bsp143I GATC 4 cut(s) 30, 58, 211, 775
Bsp1720I GCTNAGC 1 cut(s) 835
Bsp19I CCATGG 1 cut(s) 78
BspANI GGCC 4 cut(s) 83, 445, 706, 831
BspCNI CTCAG 3 cut(s) 704, 848, 1066
BspEI TCCGGA 1 cut(s) 288
BspFNI CGCG 3 cut(s) 870, 944, 1019
BspLI GGNNCC 5 cut(s) 12, 633, 634, 705, 706
BspTI CTTAAG 1 cut(s) 502
BsrBI CCGCTC 2 cut(s) 834, 986
BsrDI GCAATG 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 592
BssECI CCNNGG 4 cut(s) 78, 84, 736, 868
BssMI GATC 4 cut(s) 30, 58, 211, 775
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 738
Bst6I CTCTTC 2 cut(s) 805, 1080
BstAFI CTTAAG 1 cut(s) 502
BstAUI TGTACA 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 6 cut(s) 313, 428, 435, 691, 835, 1053
BstDSI CCRYGG 3 cut(s) 78, 84, 868
BstF5I GGATG 3 cut(s) 538, 902, 970
BstFNI CGCG 3 cut(s) 870, 944, 1019
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 4 cut(s) 33, 61, 214, 778
BstMAI GTCTC 2 cut(s) 351, 819
BstMBI GATC 4 cut(s) 30, 58, 211, 775
BstMCI CGRYCG 1 cut(s) 832
BstMWI GCNNNNNNNGC 1 cut(s) 957
BstNI CCWGG 1 cut(s) 738
BstSCI CCNGG 1 cut(s) 736
BstSLI GKGCMC 1 cut(s) 708
BstUI CGCG 3 cut(s) 870, 944, 1019
BstV1I GCAGC 1 cut(s) 836
BstX2I RGATCY 1 cut(s) 775
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 775
BstZI CGGCCG 1 cut(s) 829
BsuRI GGCC 4 cut(s) 83, 445, 706, 831
BtgI CCRYGG 3 cut(s) 78, 84, 868
BtrI CACGTC 2 cut(s) 678, 992
BtsCI GGATG 3 cut(s) 538, 902, 970
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 4 cut(s) 10, 632, 704, 705
Cfr42I CCGCGG 1 cut(s) 871
Csp6I GTAC 1 cut(s) 593
CviAII CATG 5 cut(s) 65, 79, 221, 334, 711
CviQI GTAC 1 cut(s) 593
DdeI CTNAG 6 cut(s) 313, 428, 435, 691, 835, 1053
DpnI GATC 4 cut(s) 32, 60, 213, 777
DpnII GATC 4 cut(s) 30, 58, 211, 775
EaeI YGGCCR 2 cut(s) 81, 829
EagI CGGCCG 1 cut(s) 829
Eam1104I CTCTTC 2 cut(s) 805, 1080
EarI CTCTTC 2 cut(s) 805, 1080
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 829
Eco130I CCWWGG 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 149, 708
Eco47I GGWCC 2 cut(s) 10, 632
Eco52I CGGCCG 1 cut(s) 829
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 771
EcoICRI GAGCTC 1 cut(s) 147
EcoO109I RGGNCCY 3 cut(s) 10, 632, 704
EcoRII CCWGG 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 78
EcoT38I GRGCYC 2 cut(s) 149, 708
ErhI CCWWGG 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 819
FaeI CATG 5 cut(s) 68, 82, 224, 337, 714
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 618
FatI CATG 5 cut(s) 64, 78, 220, 333, 710
Fnu4HI GCNGC 5 cut(s) 832, 850, 871, 981, 984
FokI GGATG 3 cut(s) 545, 889, 957
FriOI GRGCYC 2 cut(s) 149, 708
Fsp4HI GCNGC 5 cut(s) 832, 850, 871, 981, 984
FspBI CTAG 2 cut(s) 543, 977
GlaI GCGC 1 cut(s) 219
GluI GCNGC 5 cut(s) 832, 850, 871, 981, 984
HaeIII GGCC 4 cut(s) 83, 445, 706, 831
HapII CCGG 1 cut(s) 289
HhaI GCGC 1 cut(s) 220
Hin1II CATG 5 cut(s) 68, 82, 224, 337, 714
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 359, 1072
HpaI GTTAAC 1 cut(s) 667
HpaII CCGG 1 cut(s) 289
HphI GGTGA 2 cut(s) 239, 986
Hpy166II GTNNAC 3 cut(s) 88, 593, 667
Hpy188I TCNGA 9 cut(s) 35, 72, 140, 471, 511, 607, 675, 824, 1005
Hpy188III TCNNGA 3 cut(s) 289, 479, 586
Hpy8I GTNNAC 3 cut(s) 88, 593, 667
HpyAV CCTTC 5 cut(s) 128, 200, 485, 569, 776
HpyCH4IV ACGT 4 cut(s) 341, 663, 677, 991
HpyCH4V TGCA 5 cut(s) 296, 392, 485, 887, 1043
HpyF10VI GCNNNNNNNGC 1 cut(s) 957
HpyF3I CTNAG 6 cut(s) 313, 428, 435, 691, 835, 1053
HpySE526I ACGT 4 cut(s) 341, 663, 677, 991
Hsp92II CATG 5 cut(s) 68, 82, 224, 337, 714
HspAI GCGC 1 cut(s) 218
KflI GGGWCCC 1 cut(s) 632
Kpn2I TCCGGA 1 cut(s) 288
KspAI GTTAAC 1 cut(s) 667
KspI CCGCGG 1 cut(s) 871
Kzo9I GATC 4 cut(s) 30, 58, 211, 775
LmnI GCTCC 2 cut(s) 857, 991
LpnPI CCDG 5 cut(s) 200, 302, 310, 723, 750
Lsp1109I GCAGC 1 cut(s) 836
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 543, 977
MaeII ACGT 4 cut(s) 341, 663, 677, 991
MaeIII GTNAC 5 cut(s) 227, 545, 579, 992, 1069
MalI GATC 4 cut(s) 32, 60, 213, 777
MbiI CCGCTC 2 cut(s) 834, 986
MboI GATC 4 cut(s) 30, 58, 211, 775
MboII GAAGA 7 cut(s) 64, 787, 792, 795, 1020, 1029, 1067
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 149, 708
MluCI AATT 4 cut(s) 105, 413, 654, 721
MlyI GAGTC 2 cut(s) 353, 1066
MmeI TCCRAC 2 cut(s) 711, 1028
MroI TCCGGA 1 cut(s) 288
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 6 cut(s) 494, 503, 653, 666, 746, 930
MslI CAYNNNNRTG 2 cut(s) 83, 225
MspA1I CMGCKG 2 cut(s) 849, 870
MspCI CTTAAG 1 cut(s) 502
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 738
MvnI CGCG 3 cut(s) 870, 944, 1019
MwoI GCNNNNNNNGC 1 cut(s) 957
NcoI CCATGG 1 cut(s) 78
NdeII GATC 4 cut(s) 30, 58, 211, 775
NlaIII CATG 5 cut(s) 68, 82, 224, 337, 714
NlaIV GGNNCC 5 cut(s) 12, 633, 634, 705, 706
NmuCI GTSAC 4 cut(s) 227, 579, 992, 1069
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 558
PkrI GCNGC 5 cut(s) 833, 851, 872, 982, 985
PleI GAGTC 2 cut(s) 353, 1066
PpsI GAGTC 2 cut(s) 353, 1066
PpuMI RGGWCCY 2 cut(s) 10, 632
Psp124BI GAGCTC 1 cut(s) 149
Psp5II RGGWCCY 2 cut(s) 10, 632
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 5 cut(s) 12, 633, 634, 705, 706
PspOMI GGGCCC 1 cut(s) 704
PspPI GGNCC 4 cut(s) 10, 632, 704, 705
PspPPI RGGWCCY 2 cut(s) 10, 632
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
RseI CAYNNNNRTG 2 cut(s) 83, 225
SacI GAGCTC 1 cut(s) 149
SacII CCGCGG 1 cut(s) 871
SaqAI TTAA 6 cut(s) 494, 503, 653, 666, 746, 930
SatI GCNGC 5 cut(s) 832, 850, 871, 981, 984
Sau3AI GATC 4 cut(s) 30, 58, 211, 775
Sau96I GGNCC 4 cut(s) 10, 632, 704, 705
SchI GAGTC 2 cut(s) 353, 1066
ScrFI CCNGG 1 cut(s) 738
SduI GDGCHC 2 cut(s) 149, 708
SfaNI GCATC 1 cut(s) 472
Sfr303I CCGCGG 1 cut(s) 871
SgrBI CCGCGG 1 cut(s) 871
SinI GGWCC 2 cut(s) 10, 632
SmiMI CAYNNNNRTG 2 cut(s) 83, 225
SmlI CTYRAG 3 cut(s) 239, 502, 584
SmoI CTYRAG 3 cut(s) 239, 502, 584
SpeI ACTAGT 1 cut(s) 542
Sse9I AATT 4 cut(s) 105, 413, 654, 721
SspMI CTAG 2 cut(s) 543, 977
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 736
StyI CCWWGG 1 cut(s) 78
TaiI ACGT 4 cut(s) 344, 666, 680, 994
TaqI TCGA 1 cut(s) 201
TasI AATT 4 cut(s) 105, 413, 654, 721
TatI WGTACW 1 cut(s) 592
TauI GCSGC 4 cut(s) 834, 873, 983, 986
Tru1I TTAA 6 cut(s) 494, 503, 653, 666, 746, 930
Tru9I TTAA 6 cut(s) 494, 503, 653, 666, 746, 930
TseFI GTSAC 4 cut(s) 227, 579, 992, 1069
TseI GCWGC 1 cut(s) 849
Tsp45I GTSAC 4 cut(s) 227, 579, 992, 1069
TspDTI ATGAA 2 cut(s) 219, 253
TspGWI ACGGA 3 cut(s) 64, 552, 628
Vha464I CTTAAG 1 cut(s) 502
VpaK11BI GGWCC 2 cut(s) 10, 632
XapI RAATTY 2 cut(s) 105, 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 734
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 2 cut(s) 543, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.