RchiOBHm_Chr3g0449871

Ubiquitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0019909
Physical Location & Seq
Forward (+)
1551832 .. 1554098
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41722

Sequence Viewer

Length: 1485 bp
ATGCTAATCCTGTTTCTGTGTTTTTGTTATAGCGAGAATTTCTTGAATGAGGATTGGGATCTTATAGATTTTGAAAAGCTTGCTGAAGGGGGTGACTTACCCATCGAAGAACCAGTAGATGGTGCCATCGACATCACTCTTGACTTTGGAGATATGTGTCCATTTACGAGCGCTGGAGCTGAATTTAAGGGCACTGGAACTAATTTTAAGTTCTATGGAAATCATGAGGCTACCATTAAGATGTACACAAGTGACACCCTCAGGAAGTTGAGAGAAGAGATACTAAGGCACTTTGATGAACATTTGGGGATCGAATTACGTTTTGGTGAAGAAGTGATATTGAAGTTAGACGGCGATACTGTGTCCTTTCGGGATTGTGACATTAGCAGGACTCAAGATATCAATGTTATCTTGAGATCACCACCACCAATCTATGATCTCGGTGACTTGACTTCTGTTGGGGAGATAGATGTGATAATACATGCAAAAGGATTTCCAAGGTTCATTGTTCCAGTGTTTTTGCTGGATTCTGTGCAAGACATCAAGGAAAAGATTATGATGATCACATTCATTGACCAGGAGAACCAAATGCTGTATTACAGAAAGAAGGTGCTTGAAGAGGATAGCATACTTGCCTACTGTGGACTGTACAACAACTGCCGCATTCAGTTAGTTAATACTGGCAAACCCCGCGAACCCTGCAAACCCTCTGCATCTGAGCCTGAATCATCAACACCTGCATCTGAGCCTGAATCAACACCTGCATCTGAGCCTGAATCAACACCTGCATCTGAGCCTGAATCAACACCTGCATCTGTGCCTGAATCAACACCTATATCTGTGCCTGAATCAACACCTGGAGCTACTATACGTAATGAGATCATTCCTGGAGCTACTATACGTAATGAGATCATTCGTGTCTGCCTCTATTACGGGGACTTCAACCTGCCTCTTCCCTCTGCTACCTTTGAAGTGAAGGCGGATAGCTGCCTCAACGTATTGAAAGCAGAGATATTGAAGCAGGTTGAGAGCTACTTGGTCCTTAAATTGCCCTCTGCTGAAGAAGTAAGAGTAGGTGGATCTAGTCAGTGTGATATATCTCTTGCCCAGTGTCAGCTTTTTGGAATGGCAAATATCAAGGTGCTCTTGAAACAACCACCACCAGAATGGCTTGGCCCTTATTGTGGAGGAGTGCTCTCTACTAGGTCTATGATGACTTTGAAAGAATTGGTAATTTTACGAAATGGAACAGATAGATGGCCAGCAGTAAGGTTCAAGCTTCGTATGCATCCTCAGAGAATGGTTCTACATATAAAGGAAGTGATTGAGAAGATTTCCAATGCTAAAAAGCGCTATCAGAGGCTGCTGAACTATGCAACTGAAGAAGAATTGTTTGATTATTCCCAGATTTCCCAGATCTGTACCATGATAGAGCTCAGAATTAGTGTTCAAGGTTTATCAGAGGCTGCTAAACTATGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

494

Amino Acids

55.54

Weight (kDa)

4.86

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 168 - 225 4.2e-06 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019909)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0449871
rosa_laevigata RLG00000025777
rosa_samantha Rh3AG022700 Rh3BG023400 Rh3CG022400 Rh3DG023300
rosa_wichuraiana Rw3G001830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 745, 769, 793, 817
Acc36I ACCTGC 6 cut(s) 745, 769, 793, 817, 954, 1012
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 119
AccII CGCG 1 cut(s) 693
AciI CCGC 3 cut(s) 661, 691, 980
AclWI GGATC 3 cut(s) 66, 317, 1087
AcoI YGGCCR 1 cut(s) 1259
AcsI RAATTY 2 cut(s) 37, 182
AcuI CTGAAG 3 cut(s) 105, 1080, 1401
AfaI GTAC 3 cut(s) 245, 650, 1423
AfeI AGCGCT 2 cut(s) 172, 1352
AfiI CCNNNNNNNGG 2 cut(s) 119, 1184
AjnI CCWGG 3 cut(s) 576, 856, 886
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AluBI AGCT 9 cut(s) 79, 179, 863, 893, 987, 1032, 1117, 1279, 1435
AluI AGCT 9 cut(s) 79, 179, 863, 893, 987, 1032, 1117, 1279, 1435
Alw21I GWGCWC 3 cut(s) 1146, 1197, 1437
AlwI GGATC 3 cut(s) 66, 317, 1087
AlwNI CAGNNNCTG 2 cut(s) 1363, 1466
Aor51HI AGCGCT 2 cut(s) 172, 1352
AoxI GGCC 2 cut(s) 1174, 1259
ApeKI GCWGC 3 cut(s) 987, 1363, 1466
ApoI RAATTY 2 cut(s) 37, 182
AspLEI GCGC 2 cut(s) 173, 1353
AspS9I GGNCC 2 cut(s) 1039, 1175
AsuHPI GGTGA 4 cut(s) 104, 338, 411, 455
AvaII GGWCC 1 cut(s) 1039
AxyI CCTNAGG 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 1261
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 1437
Bbv12I GWGCWC 3 cut(s) 1146, 1197, 1437
BbvI GCAGC 3 cut(s) 974, 1350, 1453
BccI CCATC 4 cut(s) 110, 113, 134, 1251
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 3 cut(s) 578, 858, 888
BclI TGATCA 1 cut(s) 561
BfaI CTAG 2 cut(s) 1083, 1203
BfoI RGCGCY 2 cut(s) 174, 1354
BfuAI ACCTGC 6 cut(s) 745, 769, 793, 817, 954, 1012
BglII AGATCT 1 cut(s) 1416
BisI GCNGC 4 cut(s) 661, 988, 1364, 1467
BlsI GCNGC 4 cut(s) 662, 989, 1365, 1468
Bme1390I CCNGG 3 cut(s) 578, 858, 888
Bme18I GGWCC 1 cut(s) 1039
BmgT120I GGNCC 2 cut(s) 1039, 1175
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 3 cut(s) 578, 858, 888
BmrI ACTGGG 1 cut(s) 1102
BmsI GCATC 6 cut(s) 722, 749, 773, 797, 821, 1297
BmuI ACTGGG 1 cut(s) 1102
BplI GAGNNNNNCTC 2 cut(s) 1179, 1211
BpmI CTGGAG 3 cut(s) 195, 879, 909
BpuEI CTTGAG 2 cut(s) 378, 433
BsaAI YACGTR 2 cut(s) 872, 902
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 497
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 1184
Bse1I ACTGG 5 cut(s) 113, 199, 512, 685, 1108
Bse21I CCTNAGG 1 cut(s) 260
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 3 cut(s) 578, 858, 888
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 1 cut(s) 1288
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 119, 1184
BseMII CTCAG 7 cut(s) 274, 708, 735, 759, 783, 1307, 1450
BseNI ACTGG 5 cut(s) 113, 199, 512, 685, 1108
BseRI GAGGAG 1 cut(s) 1203
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 3 cut(s) 974, 1350, 1453
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 2 cut(s) 1176, 1261
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 3 cut(s) 1146, 1197, 1437
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 2 cut(s) 119, 1184
BsmFI GGGAC 1 cut(s) 950
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 2 cut(s) 1176, 1261
Bsp1286I GDGCHC 4 cut(s) 194, 1146, 1197, 1437
Bsp1407I TGTACA 2 cut(s) 243, 648
Bsp143I GATC 9 cut(s) 58, 309, 416, 436, 561, 879, 909, 1079, 1416
BspACI CCGC 3 cut(s) 661, 691, 980
BspANI GGCC 2 cut(s) 1176, 1261
BspCNI CTCAG 7 cut(s) 273, 709, 736, 760, 784, 1306, 1449
BspFNI CGCG 1 cut(s) 693
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 124
BspMI ACCTGC 6 cut(s) 745, 769, 793, 817, 954, 1012
BspPI GGATC 3 cut(s) 66, 317, 1087
BspT107I GGYRCC 1 cut(s) 122
BsrGI TGTACA 2 cut(s) 243, 648
BsrI ACTGG 5 cut(s) 113, 199, 512, 685, 1108
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 9 cut(s) 58, 309, 416, 436, 561, 879, 909, 1079, 1416
BssT1I CCWWGG 1 cut(s) 497
Bst2UI CCWGG 3 cut(s) 578, 858, 888
Bst4CI ACNGT 3 cut(s) 361, 641, 648
Bst6I CTCTTC 3 cut(s) 270, 612, 957
BstAUI TGTACA 2 cut(s) 243, 648
BstBAI YACGTR 2 cut(s) 872, 902
BstC8I GCNNGC 2 cut(s) 81, 1263
BstDEI CTNAG 8 cut(s) 260, 284, 717, 744, 768, 792, 1293, 1436
BstF5I GGATG 1 cut(s) 1288
BstFNI CGCG 1 cut(s) 693
BstH2I RGCGCY 2 cut(s) 174, 1354
BstHHI GCGC 2 cut(s) 173, 1353
BstKTI GATC 9 cut(s) 61, 312, 419, 439, 564, 882, 912, 1082, 1419
BstMBI GATC 9 cut(s) 58, 309, 416, 436, 561, 879, 909, 1079, 1416
BstMWI GCNNNNNNNGC 3 cut(s) 690, 699, 1285
BstNI CCWGG 3 cut(s) 578, 858, 888
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 3 cut(s) 576, 856, 886
BstSLI GKGCMC 1 cut(s) 194
BstSNI TACGTA 2 cut(s) 872, 902
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 3 cut(s) 974, 1350, 1453
BstX2I RGATCY 3 cut(s) 58, 1079, 1416
BstXI CCANNNNNNTGG 1 cut(s) 1167
BstYI RGATCY 3 cut(s) 58, 1079, 1416
Bsu36I CCTNAGG 1 cut(s) 260
BsuRI GGCC 2 cut(s) 1176, 1261
BtsCI GGATG 1 cut(s) 1288
BtsIMutI CAGTG 5 cut(s) 192, 519, 1094, 1115, 1480
BveI ACCTGC 6 cut(s) 745, 769, 793, 817, 954, 1012
Cac8I GCNNGC 2 cut(s) 81, 1263
CaiI CAGNNNCTG 2 cut(s) 1363, 1466
CciI TCATGA 1 cut(s) 223
CfoI GCGC 2 cut(s) 173, 1353
Cfr13I GGNCC 2 cut(s) 1039, 1175
Csp6I GTAC 3 cut(s) 244, 649, 1422
CviAII CATG 3 cut(s) 224, 482, 1426
CviQI GTAC 3 cut(s) 244, 649, 1422
DdeI CTNAG 8 cut(s) 260, 284, 717, 744, 768, 792, 1293, 1436
DpnI GATC 9 cut(s) 60, 311, 418, 438, 563, 881, 911, 1081, 1418
DpnII GATC 9 cut(s) 58, 309, 416, 436, 561, 879, 909, 1079, 1416
EaeI YGGCCR 1 cut(s) 1259
Eam1104I CTCTTC 3 cut(s) 270, 612, 957
EarI CTCTTC 3 cut(s) 270, 612, 957
EciI GGCGGA 1 cut(s) 995
Ecl136II GAGCTC 1 cut(s) 1435
Eco105I TACGTA 2 cut(s) 872, 902
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 1437
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 1039
Eco47III AGCGCT 2 cut(s) 172, 1352
Eco53kI GAGCTC 1 cut(s) 1435
Eco57I CTGAAG 3 cut(s) 105, 1080, 1401
Eco81I CCTNAGG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 1435
EcoRII CCWGG 3 cut(s) 576, 856, 886
EcoRV GATATC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 1290
EcoT38I GRGCYC 1 cut(s) 1437
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 3 cut(s) 227, 485, 1429
FalI AAGNNNNNCTT 2 cut(s) 1130, 1162
FaqI GGGAC 1 cut(s) 950
FatI CATG 3 cut(s) 223, 481, 1425
FauI CCCGC 1 cut(s) 698
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 4 cut(s) 661, 988, 1364, 1467
FokI GGATG 1 cut(s) 1275
FriOI GRGCYC 1 cut(s) 1437
Fsp4HI GCNGC 4 cut(s) 661, 988, 1364, 1467
FspBI CTAG 2 cut(s) 1083, 1203
GlaI GCGC 2 cut(s) 172, 1352
GluI GCNGC 4 cut(s) 661, 988, 1364, 1467
GsuI CTGGAG 3 cut(s) 195, 879, 909
HaeII RGCGCY 2 cut(s) 174, 1354
HaeIII GGCC 2 cut(s) 1176, 1261
HhaI GCGC 2 cut(s) 173, 1353
Hin1II CATG 3 cut(s) 227, 485, 1429
Hin6I GCGC 2 cut(s) 171, 1351
HinP1I GCGC 2 cut(s) 171, 1351
HindIII AAGCTT 2 cut(s) 77, 1277
HinfI GANTC 8 cut(s) 391, 527, 725, 752, 776, 800, 824, 848
HphI GGTGA 4 cut(s) 104, 338, 411, 455
Hpy166II GTNNAC 2 cut(s) 246, 644
Hpy188I TCNGA 8 cut(s) 718, 745, 769, 793, 1296, 1359, 1439, 1462
Hpy188III TCNNGA 8 cut(s) 43, 140, 224, 262, 371, 395, 412, 1147
Hpy8I GTNNAC 2 cut(s) 246, 644
HpyAV CCTTC 3 cut(s) 80, 601, 970
HpyCH4III ACNGT 3 cut(s) 361, 641, 648
HpyCH4IV ACGT 4 cut(s) 319, 871, 901, 996
HpyF10VI GCNNNNNNNGC 3 cut(s) 690, 699, 1285
HpyF3I CTNAG 8 cut(s) 260, 284, 717, 744, 768, 792, 1293, 1436
HpySE526I ACGT 4 cut(s) 319, 871, 901, 996
Hsp92II CATG 3 cut(s) 227, 485, 1429
HspAI GCGC 2 cut(s) 171, 1351
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 9 cut(s) 58, 309, 416, 436, 561, 879, 909, 1079, 1416
LmnI GCTCC 3 cut(s) 176, 860, 890
Lsp1109I GCAGC 3 cut(s) 974, 1350, 1453
LweI GCATC 6 cut(s) 722, 749, 773, 797, 821, 1297
MaeI CTAG 2 cut(s) 1083, 1203
MaeII ACGT 4 cut(s) 319, 871, 901, 996
MaeIII GTNAC 4 cut(s) 92, 251, 377, 443
MalI GATC 9 cut(s) 60, 311, 418, 438, 563, 881, 911, 1081, 1418
MboI GATC 9 cut(s) 58, 309, 416, 436, 561, 879, 909, 1079, 1416
MboII GAAGA 9 cut(s) 119, 287, 341, 629, 944, 1073, 1342, 1394, 1397
MflI RGATCY 3 cut(s) 58, 1079, 1416
MhlI GDGCHC 4 cut(s) 194, 1146, 1197, 1437
MlsI TGGCCA 1 cut(s) 1261
MluCI AATT 9 cut(s) 37, 182, 202, 314, 1046, 1226, 1233, 1388, 1440
MluNI TGGCCA 1 cut(s) 1261
MlyI GAGTC 1 cut(s) 385
Mox20I TGGCCA 1 cut(s) 1261
Mph1103I ATGCAT 1 cut(s) 1290
MscI TGGCCA 1 cut(s) 1261
MseI TTAA 5 cut(s) 186, 207, 237, 675, 1044
MslI CAYNNNNRTG 3 cut(s) 239, 294, 1165
Msp20I TGGCCA 1 cut(s) 1261
MspR9I CCNGG 3 cut(s) 578, 858, 888
Mva1269I GAATGC 1 cut(s) 663
MvaI CCWGG 3 cut(s) 578, 858, 888
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 3 cut(s) 690, 699, 1285
NdeII GATC 9 cut(s) 58, 309, 416, 436, 561, 879, 909, 1079, 1416
NlaIII CATG 3 cut(s) 227, 485, 1429
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 4 cut(s) 92, 251, 377, 443
NsiI ATGCAT 1 cut(s) 1290
NspI RCATGY 1 cut(s) 485
PagI TCATGA 1 cut(s) 223
PaqCI CACCTGC 4 cut(s) 745, 769, 793, 817
PctI GAATGC 1 cut(s) 663
PfeI GAWTC 7 cut(s) 527, 725, 752, 776, 800, 824, 848
PflMI CCANNNNNTGG 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 886
PkrI GCNGC 4 cut(s) 662, 989, 1365, 1468
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 2 cut(s) 872, 902
Psp124BI GAGCTC 1 cut(s) 1437
Psp6I CCWGG 3 cut(s) 576, 856, 886
PspGI CCWGG 3 cut(s) 576, 856, 886
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 1039, 1175
PstNI CAGNNNCTG 2 cut(s) 1363, 1466
PsuI RGATCY 3 cut(s) 58, 1079, 1416
RsaI GTAC 3 cut(s) 245, 650, 1423
RsaNI GTAC 3 cut(s) 244, 649, 1422
RseI CAYNNNNRTG 3 cut(s) 239, 294, 1165
SacI GAGCTC 1 cut(s) 1437
SaqAI TTAA 5 cut(s) 186, 207, 237, 675, 1044
SatI GCNGC 4 cut(s) 661, 988, 1364, 1467
Sau3AI GATC 9 cut(s) 58, 309, 416, 436, 561, 879, 909, 1079, 1416
Sau96I GGNCC 2 cut(s) 1039, 1175
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 3 cut(s) 578, 858, 888
SduI GDGCHC 4 cut(s) 194, 1146, 1197, 1437
SfaNI GCATC 6 cut(s) 722, 749, 773, 797, 821, 1297
SinI GGWCC 1 cut(s) 1039
SmiMI CAYNNNNRTG 3 cut(s) 239, 294, 1165
SmlI CTYRAG 2 cut(s) 393, 412
SmoI CTYRAG 2 cut(s) 393, 412
SnaBI TACGTA 2 cut(s) 872, 902
Sse9I AATT 9 cut(s) 37, 182, 202, 314, 1046, 1226, 1233, 1388, 1440
SsiI CCGC 3 cut(s) 661, 691, 980
SspMI CTAG 2 cut(s) 1083, 1203
SstI GAGCTC 1 cut(s) 1437
StyD4I CCNGG 3 cut(s) 576, 856, 886
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 3 cut(s) 361, 641, 648
TaiI ACGT 4 cut(s) 322, 874, 904, 999
TaqI TCGA 3 cut(s) 105, 129, 312
TasI AATT 9 cut(s) 37, 182, 202, 314, 1046, 1226, 1233, 1388, 1440
TatI WGTACW 2 cut(s) 243, 648
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 7 cut(s) 527, 725, 752, 776, 800, 824, 848
Tru1I TTAA 5 cut(s) 186, 207, 237, 675, 1044
Tru9I TTAA 5 cut(s) 186, 207, 237, 675, 1044
TscAI CASTG 4 cut(s) 199, 519, 1094, 1115
TseFI GTSAC 4 cut(s) 92, 251, 377, 443
TseI GCWGC 3 cut(s) 987, 1363, 1466
Tsp45I GTSAC 4 cut(s) 92, 251, 377, 443
TspDTI ATGAA 3 cut(s) 312, 493, 559
TspRI CASTG 4 cut(s) 199, 519, 1094, 1115
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 1039
XapI RAATTY 2 cut(s) 37, 182
XceI RCATGY 1 cut(s) 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 1164
XspI CTAG 2 cut(s) 1083, 1203
Zsp2I ATGCAT 1 cut(s) 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.