Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019912

Physical Location & Seq

Genomic Coordinates Forward (+)

6544155 .. 6545695

Gene Structure 1541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42418

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGCCCTTCTGGCTCCGGCAAATCAACCTTGCTTGATGCTCTCTCTAGCCGTTTGGCTTCGAATGCCTTCCATCTGGCTCTGTTTTACTCAATGGACGCAAAAGAAAGCTCTCTTTCGGCACAGCTTGCTTCAGCATTTTTTATAACACAGACACTACGTGCCCTATCACGAGATGGAAGGAATGTGATGGCTTCAATTCACAAGCCAAACAGTGAAGTCTTTGAACTATTTGATCAACTGTACTTGCTTTCTGGTGGCAACACAGTTTACTTTGGTCAGGCCTCTGAGGCATATGAGGAGTTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

103

Amino Acids

11.1

Weight (kDa)

5.16

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_29	PF13555	1 - 22	8.1e-06	P-loop containing region of AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0019912)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0457431
rosa_laevigata	RLG00000025230
rosa_multiflora	Rmu_co8009242.1_g000001
rosa_samantha	Rh3AG080600 Rh3BG082500 Rh3CG082700 Rh3DG084200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	198, 227
AluBI	AGCT	2 cut(s)	111, 127
AluI	AGCT	2 cut(s)	111, 127
AoxI	GGCC	2 cut(s)	4, 282
ApaI	GGGCCC	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	4, 5
AsuII	TTCGAA	1 cut(s)	62
BaeGI	GKGCMC	2 cut(s)	8, 166
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	171
BccI	CCATC	3 cut(s)	81, 170, 184
BceAI	ACGGC	1 cut(s)	36
BclI	TGATCA	1 cut(s)	235
BfaI	CTAG	1 cut(s)	48
BglI	GCCNNNNNGGC	2 cut(s)	12, 290
BmgT120I	GGNCC	2 cut(s)	4, 5
BmiI	GGNNCC	2 cut(s)	6, 16
BmsI	GCATC	1 cut(s)	28
Bpu14I	TTCGAA	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	279
BseSI	GKGCMC	2 cut(s)	8, 166
BshFI	GGCC	2 cut(s)	6, 284
BsiSI	CCGG	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	6, 284
Bsp119I	TTCGAA	1 cut(s)	62
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	2 cut(s)	8, 166
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	2 cut(s)	6, 284
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	6, 16
BspT104I	TTCGAA	1 cut(s)	62
BssMI	GATC	1 cut(s)	235
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	215, 243, 268
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 65, 128, 290
BstSLI	GKGCMC	2 cut(s)	8, 166
BsuRI	GGCC	2 cut(s)	6, 284
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	4, 5
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	244
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
DraIII	CACNNNGTG	1 cut(s)	161
Eco147I	AGGCCT	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	8
FaiI	YATR	3 cut(s)	146, 295, 297
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	235
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	6, 284
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	3 cut(s)	18, 79, 174
HpyCH4III	ACNGT	3 cut(s)	215, 243, 268
HpyCH4IV	ACGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 65, 128, 290
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	4 cut(s)	31, 62, 240, 266
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	160
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	8, 166
MluCI	AATT	1 cut(s)	198
MnlI	CCTC	3 cut(s)	283, 292, 295
MroXI	GAANNNNTTC	1 cut(s)	68
MspI	CCGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	70
MwoI	GCNNNNNNNGC	4 cut(s)	12, 65, 128, 290
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	6, 16
NspV	TTCGAA	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	284
PctI	GAATGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	6, 16
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	4, 5
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	4, 5
SduI	GDGCHC	2 cut(s)	8, 166
SetI	ASST	4 cut(s)	32, 113, 129, 163
SfaNI	GCATC	1 cut(s)	28
SfuI	TTCGAA	1 cut(s)	62
Sse9I	AATT	1 cut(s)	198
SseBI	AGGCCT	1 cut(s)	284
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	284
TaaI	ACNGT	3 cut(s)	215, 243, 268
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	62
TasI	AATT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	243
TscAI	CASTG	1 cut(s)	220
TspRI	CASTG	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.