Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0019912

Physical Location & Seq

Genomic Coordinates Forward (+)

6553561 .. 6555414

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG084200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTGACTCTGAGTAACGGTGAGATTCGGACGGCTTTGGAGGGTTTAACTGGTTATGCAGAGCCTGAAAGCTTCAAAGCTTTGATGGGCCCTTCTGGCTCCGGCAAATCAACCTTGCTTGATGCTCTCTCTAGCCGTTTGGCTTCGAATGCCTTCCATCTGGCTCTGTTTTACTCAATGGACGCAAAAGAAAGCTCTCTTTCGGCACAGCTTGCTTCAGCATTTTTTATAACACAGACACTACGTGCCCTATCACGAGATGGAAGGACTGTGATAGCTTCAATTCACAAGCCAAACAGTGAAGTCTTTGAACTATTTGATCAACTGTACTTGCTTTCTGGTGGCAACACAGTTTACTTTGGTCAGGCCTCTGAGGCAGATCAGGACGATACCATAGATACGTACTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

137

Amino Acids

14.81

Weight (kDa)

4.61

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_29	PF13555	26 - 50	8.8e-07	P-loop containing region of AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019912)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0457431
rosa_laevigata	RLG00000025230
rosa_multiflora	Rmu_co8009242.1_g000001
rosa_samantha	Rh3AG080600 Rh3BG082500 Rh3CG082700 Rh3DG084200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	201
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	2 cut(s)	329, 404
AgsI	TTSAA	3 cut(s)	76, 282, 311
AluBI	AGCT	5 cut(s)	72, 80, 195, 211, 278
AluI	AGCT	5 cut(s)	72, 80, 195, 211, 278
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	88, 366
ApaI	GGGCCC	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	88, 89
AsuHPI	GGTGA	2 cut(s)	16, 32
AsuII	TTCGAA	1 cut(s)	146
BaeGI	GKGCMC	2 cut(s)	92, 250
BanII	GRGCYC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	255
BccI	CCATC	3 cut(s)	79, 165, 254
BceAI	ACGGC	2 cut(s)	48, 120
BclI	TGATCA	1 cut(s)	319
BfaI	CTAG	1 cut(s)	132
BglI	GCCNNNNNGGC	2 cut(s)	96, 374
BmgT120I	GGNCC	2 cut(s)	88, 89
BmiI	GGNNCC	2 cut(s)	90, 100
BmsI	GCATC	1 cut(s)	112
Bpu14I	TTCGAA	1 cut(s)	146
BsaAI	YACGTR	2 cut(s)	245, 402
Bse1I	ACTGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	2 cut(s)	92, 250
BshFI	GGCC	2 cut(s)	90, 368
BsiSI	CCGG	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	90, 368
Bsp119I	TTCGAA	1 cut(s)	146
Bsp120I	GGGCCC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	92, 250
Bsp143I	GATC	2 cut(s)	319, 379
BspANI	GGCC	2 cut(s)	90, 368
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	90, 100
BspT104I	TTCGAA	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	319, 379
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	5 cut(s)	20, 271, 299, 327, 352
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstBAI	YACGTR	2 cut(s)	245, 402
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	11, 372
BstKTI	GATC	2 cut(s)	322, 382
BstMBI	GATC	2 cut(s)	319, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 149, 212, 374
BstSLI	GKGCMC	2 cut(s)	92, 250
BstSNI	TACGTA	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	90, 368
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	88, 89
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	328, 403
CviQI	GTAC	2 cut(s)	328, 403
DdeI	CTNAG	2 cut(s)	11, 372
DpnI	GATC	2 cut(s)	321, 381
DpnII	GATC	2 cut(s)	319, 379
DraIII	CACNNNGTG	1 cut(s)	245
Eco105I	TACGTA	1 cut(s)	402
Eco147I	AGGCCT	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	92
FaiI	YATR	6 cut(s)	57, 230, 395, 408, 410, 412
FbaI	TGATCA	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	90, 368
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	191
HindIII	AAGCTT	2 cut(s)	70, 78
HinfI	GANTC	2 cut(s)	7, 25
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	16, 32
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	12, 30, 373
Hpy188III	TCNNGA	2 cut(s)	255, 383
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	3 cut(s)	102, 163, 258
HpyCH4III	ACNGT	5 cut(s)	20, 271, 299, 327, 352
HpyCH4IV	ACGT	2 cut(s)	244, 401
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 149, 212, 374
HpyF3I	CTNAG	2 cut(s)	11, 372
HpySE526I	ACGT	2 cut(s)	244, 401
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	319, 379
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	8 cut(s)	36, 78, 81, 115, 146, 324, 350, 368
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	2 cut(s)	244, 401
MaeIII	GTNAC	2 cut(s)	4, 14
MalI	GATC	2 cut(s)	321, 381
MboI	GATC	2 cut(s)	319, 379
MhlI	GDGCHC	2 cut(s)	92, 250
MluCI	AATT	1 cut(s)	282
MnlI	CCTC	3 cut(s)	34, 367, 379
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	47
MspI	CCGG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	154
MwoI	GCNNNNNNNGC	4 cut(s)	96, 149, 212, 374
NdeII	GATC	2 cut(s)	319, 379
NlaIV	GGNNCC	2 cut(s)	90, 100
NmuCI	GTSAC	1 cut(s)	4
NspV	TTCGAA	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	368
PctI	GAATGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	25
Ppu21I	YACGTR	2 cut(s)	245, 402
PsiI	TTATAA	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	90, 100
PspOMI	GGGCCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	88, 89
PstNI	CAGNNNCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	329, 404
RsaNI	GTAC	2 cut(s)	328, 403
SaqAI	TTAA	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	319, 379
Sau96I	GGNCC	2 cut(s)	88, 89
SduI	GDGCHC	2 cut(s)	92, 250
SetI	ASST	8 cut(s)	74, 82, 116, 197, 213, 247, 280, 404
SfaNI	GCATC	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	146
SnaBI	TACGTA	1 cut(s)	402
Sse9I	AATT	1 cut(s)	282
SseBI	AGGCCT	1 cut(s)	368
SspMI	CTAG	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	368
TaaI	ACNGT	5 cut(s)	20, 271, 299, 327, 352
TaiI	ACGT	2 cut(s)	247, 404
TaqI	TCGA	1 cut(s)	146
TasI	AATT	1 cut(s)	282
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.