Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0019912

Physical Location & Seq

Genomic Coordinates Reverse (-)

43197391 .. 43199791

Gene Structure 2401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025230

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTGGGTGATGGATGCCAAAGGTGCTTGGACAGAGCAATTAACTTTTGAATATGTAGACTACTTCCCTTACAGCTTACCTCGAAAGCTATTGGCATTTTGGAAGAGCAACGAAATTTTTGGGGTTGGAGAAAATGGATCTATTGTCTGCTATAACCTCAAAACCAAAATTGTCAAGCATCTTCCGATTCGAAGTGTTCCGGATTATTTTCCACCCTCTAGACACACTTTCTATCCTTTTTGTGAAGAAGAACCCAGCAGCAGAAAATGCTACGATGGAGATAGAGAGCAGCAAGCCCTCAGGAATGGGCTTGTGGCTGGTGGGCTTAGTCCTCTGAATGAGACTCTATGGTGGGAGAAGGCCATTGTGGAAATTGTAGGGGATGTGTTGGCGAGGCTGACGTGGAACGATCTGACAGGGATGGTGACTCTGAGCAACGATGAGATTCAGACGGCTTTGGAGGGTTTAACTGGTTATGCAGAGCCTGAAAGCTTCACAGCTTTGATGGGCCCTTCTGGTTCAGGCAAATCAACCTTGCTTGACGGTCTCTCTAGCCGTTTGGCTTCCAATGCCTTCCATCTGGCTCTGTTTTACTCTAACGGACGCAAAAGAAAGCTCTCTTTCGGCACAGCTTGCTTCAGCATTTTTCATAACACAGGAGATAGAAGGACTGATAGCTTCAATTCAGAAGCCAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

234

Amino Acids

26.18

Weight (kDa)

5.85

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_29	PF13555	163 - 190	4.2e-06	P-loop containing region of AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0019912)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0457431
rosa_laevigata	RLG00000025230
rosa_multiflora	Rmu_co8009242.1_g000001
rosa_samantha	Rh3AG080600 Rh3BG082500 Rh3CG082700 Rh3DG084200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	199
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	622
AgsI	TTSAA	2 cut(s)	50, 682
AjiI	CACGTC	1 cut(s)	402
AluBI	AGCT	7 cut(s)	75, 88, 492, 500, 616, 632, 678
AluI	AGCT	7 cut(s)	75, 88, 492, 500, 616, 632, 678
Alw26I	GTCTC	2 cut(s)	335, 551
AlwI	GGATC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	2 cut(s)	360, 508
ApaI	GGGCCC	1 cut(s)	512
ApeKI	GCWGC	2 cut(s)	258, 289
ApoI	RAATTY	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	508, 509
AsuHPI	GGTGA	2 cut(s)	19, 436
AsuII	TTCGAA	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	270, 301
BccI	CCATC	5 cut(s)	4, 269, 415, 499, 585
BceAI	ACGGC	2 cut(s)	468, 540
BcoDI	GTCTC	2 cut(s)	335, 551
BfaI	CTAG	2 cut(s)	219, 552
BisI	GCNGC	2 cut(s)	259, 290
BlsI	GCNGC	2 cut(s)	260, 291
BmgBI	CACGTC	1 cut(s)	402
BmgT120I	GGNCC	2 cut(s)	508, 509
BmiI	GGNNCC	1 cut(s)	510
BmsI	GCATC	2 cut(s)	4, 187
Bpu14I	TTCGAA	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	551
BsaWI	WCCGGW	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	475
Bse21I	CCTNAGG	1 cut(s)	299
BseAI	TCCGGA	1 cut(s)	199
BseGI	GGATG	3 cut(s)	19, 388, 426
BseMII	CTCAG	2 cut(s)	313, 422
BseNI	ACTGG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	270, 301
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	2 cut(s)	362, 510
BsiSI	CCGG	1 cut(s)	200
BsmAI	GTCTC	2 cut(s)	335, 551
BsnI	GGCC	2 cut(s)	362, 510
Bso31I	GGTCTC	1 cut(s)	551
Bsp119I	TTCGAA	1 cut(s)	190
Bsp120I	GGGCCC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	137, 409
BspANI	GGCC	2 cut(s)	362, 510
BspCNI	CTCAG	2 cut(s)	312, 423
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	475
BssMI	GATC	2 cut(s)	137, 409
Bst4CI	ACNGT	2 cut(s)	545, 699
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	2 cut(s)	267, 633
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	294, 634
BstDEI	CTNAG	3 cut(s)	299, 326, 431
BstF5I	GGATG	3 cut(s)	19, 388, 426
BstKTI	GATC	2 cut(s)	140, 412
BstMAI	GTCTC	2 cut(s)	335, 551
BstMBI	GATC	2 cut(s)	137, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 267, 569, 633
BstSLI	GKGCMC	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	270, 301
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	362, 510
BtrI	CACGTC	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	19, 388, 426
Cac8I	GCNNGC	2 cut(s)	294, 634
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	508, 509
CseI	GACGC	1 cut(s)	612
DdeI	CTNAG	3 cut(s)	299, 326, 431
DpnI	GATC	2 cut(s)	139, 411
DpnII	GATC	2 cut(s)	137, 409
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	512
Eco31I	GGTCTC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	622
Eco81I	CCTNAGG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	512
FaiI	YATR	5 cut(s)	54, 153, 349, 477, 651
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	259, 290
FokI	GGATG	3 cut(s)	26, 395, 433
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	259, 290
FspBI	CTAG	2 cut(s)	219, 552
GluI	GCNGC	2 cut(s)	259, 290
GsaI	CCCAGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	362, 510
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	612
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	4 cut(s)	187, 343, 427, 445
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	19, 436
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	6 cut(s)	186, 336, 414, 432, 450, 688
Hpy188III	TCNNGA	3 cut(s)	200, 219, 301
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	4 cut(s)	352, 522, 583, 660
HpyCH4III	ACNGT	2 cut(s)	545, 699
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 267, 569, 633
HpyF3I	CTNAG	3 cut(s)	299, 326, 431
HpySE526I	ACGT	1 cut(s)	401
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	137, 409
LguI	GCTCTTC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	270, 301
LweI	GCATC	2 cut(s)	4, 187
MaeI	CTAG	2 cut(s)	219, 552
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	139, 411
MboI	GATC	2 cut(s)	137, 409
MboII	GAAGA	4 cut(s)	115, 173, 257, 260
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	5 cut(s)	38, 114, 168, 372, 682
MlyI	GAGTC	2 cut(s)	337, 421
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	7 cut(s)	90, 167, 226, 308, 342, 387, 454
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	2 cut(s)	41, 467
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	23, 267, 569, 633
NdeII	GATC	2 cut(s)	137, 409
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	187, 445
PkrI	GCNGC	2 cut(s)	260, 291
PleI	GAGTC	2 cut(s)	337, 421
PpsI	GAGTC	2 cut(s)	337, 421
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	510
PspOMI	GGGCCC	1 cut(s)	508
PspPI	GGNCC	2 cut(s)	508, 509
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	41, 467
SatI	GCNGC	2 cut(s)	259, 290
Sau3AI	GATC	2 cut(s)	137, 409
Sau96I	GGNCC	2 cut(s)	508, 509
SchI	GAGTC	2 cut(s)	337, 421
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	2 cut(s)	4, 187
SfuI	TTCGAA	1 cut(s)	190
Sse9I	AATT	5 cut(s)	38, 114, 168, 372, 682
SspMI	CTAG	2 cut(s)	219, 552
TaaI	ACNGT	2 cut(s)	545, 699
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	2 cut(s)	82, 190
TasI	AATT	5 cut(s)	38, 114, 168, 372, 682
TfiI	GAWTC	2 cut(s)	187, 445
Tru1I	TTAA	2 cut(s)	41, 467
Tru9I	TTAA	2 cut(s)	41, 467
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	258, 289
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	1 cut(s)	638
TspGWI	ACGGA	1 cut(s)	615
XapI	RAATTY	1 cut(s)	114
XbaI	TCTAGA	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	2 cut(s)	219, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.