Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8009242.1

Orthogroup ID

OG0019912

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 481

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8009242.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ctgagcattgcactcgaaatactcacaaagccaaggttgttgtttctcgatgagcctaccagtggcctcgacagtgctgcagctttcttcgtagttcaaaccctcagatacattgctgaagatggcagaactgtcatttcttcgattcatcagcccagtagtgaagtgtttgctttgtttgatgatcttgttctgctttctagtggccaaacagtttattctggtcaagcaaaaatggcagtagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0080051 GO:0080167 GO:0080172

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

82

Amino Acids

8.89

Weight (kDa)

4.55

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019912)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0457431
rosa_laevigata	RLG00000025230
rosa_multiflora	Rmu_co8009242.1_g000001
rosa_samantha	Rh3AG080600 Rh3BG082500 Rh3CG082700 Rh3DG084200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
AoxI	GGCC	2 cut(s)	64, 205
ApeKI	GCWGC	2 cut(s)	77, 80
BalI	TGGCCA	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	64, 92
BccI	CCATC	1 cut(s)	116
BcgI	CGANNNNNNTGC	3 cut(s)	29, 59, 93
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	2 cut(s)	78, 81
BlsI	GCNGC	2 cut(s)	79, 82
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	60, 156
Bse3DI	GCAATG	2 cut(s)	6, 111
BseDI	CCNNGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	2 cut(s)	6, 111
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	60, 156
BseXI	GCAGC	2 cut(s)	64, 92
BshFI	GGCC	2 cut(s)	66, 207
BslI	CCNNNNNNNGG	1 cut(s)	62
BsnI	GGCC	2 cut(s)	66, 207
Bsp143I	GATC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	66, 207
BspCNI	CTCAG	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	82
BsrDI	GCAATG	2 cut(s)	6, 111
BsrI	ACTGG	2 cut(s)	60, 156
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	3 cut(s)	74, 133, 214
BstDEI	CTNAG	2 cut(s)	2, 104
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	64, 92
BsuRI	GGCC	2 cut(s)	66, 207
BtsIMutI	CAGTG	2 cut(s)	67, 79
CviJI	RGCY	6 cut(s)	31, 55, 66, 83, 154, 207
CviKI_1	RGCY	6 cut(s)	31, 55, 66, 83, 154, 207
DdeI	CTNAG	2 cut(s)	2, 104
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
Fnu4HI	GCNGC	2 cut(s)	78, 81
Fsp4HI	GCNGC	2 cut(s)	78, 81
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	2 cut(s)	78, 81
HaeIII	GGCC	2 cut(s)	66, 207
HinfI	GANTC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	47
HpyCH4III	ACNGT	3 cut(s)	74, 133, 214
HpyCH4V	TGCA	2 cut(s)	11, 80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	2, 104
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	3 cut(s)	73, 169, 207
Lsp1109I	GCAGC	2 cut(s)	64, 92
MaeI	CTAG	1 cut(s)	201
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	3 cut(s)	79, 131, 132
MlsI	TGGCCA	1 cut(s)	207
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	2 cut(s)	77, 113
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	79, 82
PstI	CTGCAG	1 cut(s)	82
SatI	GCNGC	2 cut(s)	78, 81
Sau3AI	GATC	1 cut(s)	184
SetI	ASST	2 cut(s)	38, 85
SfcI	CTRYAG	1 cut(s)	78
SspMI	CTAG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	3 cut(s)	74, 133, 214
TaqI	TCGA	4 cut(s)	15, 48, 69, 143
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	2 cut(s)	67, 79
TseI	GCWGC	2 cut(s)	77, 80
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	67, 79
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.