RchiOBHm_Chr4g0387391

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0020537
Physical Location & Seq
Reverse (-)
2560883 .. 2561134
252 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36071

Sequence Viewer

Length: 252 bp
ATGGCTAAAGGTCTCTTACAACCTGAAAATAAGAGAATGTTGAAAGAAGTTGGAAATGAGTACTTTGATGATCTACTCTCAAGTACATTTCTTCAACATCCATATGGCAACTATTTCATCATGCACGACCTTATCAGTGATTTGGCAAAGTTTATACCTGGAGAATTCTGTGTTAGACTGGAGGACAACGCCTCACCCAACATTATGAGCAAGACACGCCATTTTTCATATATGAAAGCAAAAATATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

83

Amino Acids

9.63

Weight (kDa)

6.82

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 1 - 49 5.7e-13 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020537)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387391
rosa_laevigata RLG00000018080 RLG00000018082
rosa_multiflora Rmu_sc0004283.1_g000014 Rmu_sc0009639.1_g000004
rosa_rugosa Rorug02G0188900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 2 cut(s) 62, 85
AgsI TTSAA 2 cut(s) 43, 95
AjnI CCWGG 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 17
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
BpmI CTGGAG 2 cut(s) 180, 200
BpuEI CTTGAG 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 70
BspHI TCATGA 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 183
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 142
CciI TCATGA 1 cut(s) 248
Csp6I GTAC 2 cut(s) 61, 84
CviAII CATG 2 cut(s) 121, 249
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 2 cut(s) 61, 84
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 124, 252
FaiI YATR 9 cut(s) 103, 105, 122, 155, 206, 229, 231, 233, 250
FatI CATG 2 cut(s) 120, 248
FauNDI CATATG 1 cut(s) 103
FokI GGATG 1 cut(s) 84
GsuI CTGGAG 2 cut(s) 180, 200
Hin1II CATG 2 cut(s) 124, 252
HphI GGTGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
Hsp92II CATG 2 cut(s) 124, 252
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 36, 144, 164, 171
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 83
MluCI AATT 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 2 cut(s) 175, 202
MslI CAYNNNNRTG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeI CATATG 1 cut(s) 103
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 124, 252
PagI TCATGA 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
RsaI GTAC 2 cut(s) 62, 85
RsaNI GTAC 2 cut(s) 61, 84
RseI CAYNNNNRTG 1 cut(s) 102
Sau3AI GATC 1 cut(s) 70
ScaI AGTACT 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 159
SetI ASST 4 cut(s) 13, 25, 132, 160
SgeI CNNG 9 cut(s) 35, 93, 133, 137, 170, 171, 191, 223, 228
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 157
TasI AATT 1 cut(s) 164
TatI WGTACW 2 cut(s) 60, 83
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 106, 216, 248
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.