Rmu_sc0009639.1_g000004

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009639.1
OG0020537
Physical Location & Seq
Forward (+)
17085 .. 17573
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009639.1_g000004.1.cds

Sequence Viewer

Length: 489 bp
atgatctgttgccaatgctacaatgctttaccaagctctgttattgaggagttgcttagttcaattcgcaacttgaaacatctaaggcacttggacctgtcatctaatgctcaaatcaaaatgttaccagatgcagtgtgcgatttgtataatttacaaacattactgttgacagattgtcgtgctcttactgaatcgctgcccagcttggcaaggctgataaagttgcaccatcttaatatcagaagatacaaagttaggagggacgccaccacaataccacatatgagaaaaatgaaagaccttcaaacgtcaagtgattttgtgttgggaaagaattcagaggttggttttgcagagttgaagaagctttggcatttgcgagaagtacttcatatttcaaggcttcataatattgtctatgttgaagatgctttggaggccagtataagggagaagaagtatcttgatggactagtttcatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

162

Amino Acids

18.66

Weight (kDa)

9.01

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020537)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387391
rosa_laevigata RLG00000018080 RLG00000018082
rosa_multiflora Rmu_sc0004283.1_g000014 Rmu_sc0009639.1_g000004
rosa_rugosa Rorug02G0188900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 450
AgsI TTSAA 6 cut(s) 63, 76, 308, 364, 402, 428
AhdI GACNNNNNGTC 1 cut(s) 177
AhlI ACTAGT 1 cut(s) 475
AluBI AGCT 3 cut(s) 36, 207, 370
AluI AGCT 3 cut(s) 36, 207, 370
Alw21I GWGCWC 1 cut(s) 187
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 2 cut(s) 337, 390
AspS9I GGNCC 1 cut(s) 94
AvaII GGWCC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 186
BccI CCATC 2 cut(s) 240, 464
BcuI ACTAGT 1 cut(s) 475
BfaI CTAG 1 cut(s) 476
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmcAI AGTACT 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 94
BmeRI GACNNNNNGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 94
BmsI GCATC 2 cut(s) 121, 421
BsaHI GRCGYC 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 186
BseYI CCCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 187
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 443
BspHI TCATGA 1 cut(s) 485
BsrI ACTGG 1 cut(s) 444
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 56, 83
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 443
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
CciI TCATGA 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 389
CviAII CATG 1 cut(s) 486
CviJI RGCY 6 cut(s) 36, 207, 217, 370, 406, 443
CviKI_1 RGCY 6 cut(s) 36, 207, 217, 370, 406, 443
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 2 cut(s) 56, 83
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DriI GACNNNNNGTC 1 cut(s) 177
Eam1105I GACNNNNNGTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 337
FaeI CATG 1 cut(s) 489
FaiI YATR 8 cut(s) 150, 285, 287, 396, 411, 423, 449, 487
FaqI GGGAC 1 cut(s) 278
FatI CATG 1 cut(s) 485
FauNDI CATATG 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 476
GluI GCNGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 443
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 1 cut(s) 489
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 245, 343
Hpy188III TCNNGA 2 cut(s) 467, 486
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 134, 229, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 2 cut(s) 56, 83
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 1 cut(s) 489
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 4 cut(s) 110, 141, 217, 457
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 2 cut(s) 121, 421
MaeI CTAG 1 cut(s) 476
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 123
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 258, 376, 440, 469
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 3 cut(s) 63, 151, 337
MnlI CCTC 4 cut(s) 40, 255, 337, 433
MroXI GAANNNNTTC 2 cut(s) 337, 390
MseI TTAA 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeI CATATG 1 cut(s) 285
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 489
PagI TCATGA 1 cut(s) 485
PdmI GAANNNNTTC 2 cut(s) 337, 390
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 390
SduI GDGCHC 1 cut(s) 187
SetI ASST 7 cut(s) 38, 99, 209, 306, 314, 348, 372
SfaNI GCATC 2 cut(s) 121, 421
SinI GGWCC 1 cut(s) 94
SpeI ACTAGT 1 cut(s) 475
Sse9I AATT 3 cut(s) 63, 151, 337
SspI AATATT 1 cut(s) 415
SspMI CTAG 1 cut(s) 476
TaaI ACNGT 1 cut(s) 168
TaiI ACGT 1 cut(s) 314
TasI AATT 3 cut(s) 63, 151, 337
TatI WGTACW 1 cut(s) 388
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 141
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 4 cut(s) 311, 383, 398, 471
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 337
XmnI GAANNNNTTC 2 cut(s) 337, 390
XspI CTAG 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.