Rmu_sc0004283.1_g000014

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004283.1
OG0020537
Physical Location & Seq
Reverse (-)
87273 .. 90384
3112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004283.1_g000014.1.cds

Sequence Viewer

Length: 660 bp
atgttgaaagaagctggaaatgactactttgatgatctactctcaagttcatttcttcaacatcaatatggaaacaatttgatcatggacgaccttatcagtgatttggcaaaatttatacctggagaattttgtgttagactggaggacaaggtggtagcggtggcgcggggctggctagaggagtcccagacctgttatgggctgcgatcgaggtcggaggaggtgagggttgtcggtttctgggcagccacctcacctgcagttgcaggttctgtgcagcactgtagaactctcgccggtgactccagtggaccgcagacgagctctgcagacccccggctcgcagagttgaacctctcttactttggtcttgcgggcaccattcctcctgagctaggcaacttatcattgcttgttcatctagatgtccaaaataacagtttccaggatactttgcctcaggaattggctcgcctgcgccagttgaagtttattaacttgggatacaacaaatttatgggagtgattccctcatggtttgggtccttgtccaaacttcaaggatttaggttgtttggtaatcaatttgcaggttccataccatctaccatcttcgacttatctactttgcaaattattgatatgaggtacaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

219

Amino Acids

24.27

Weight (kDa)

5.03

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020537)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387391
rosa_laevigata RLG00000018080 RLG00000018082
rosa_multiflora Rmu_sc0004283.1_g000014 Rmu_sc0009639.1_g000004
rosa_rugosa Rorug02G0188900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 268
Acc36I ACCTGC 3 cut(s) 260, 268, 584
AccB1I GGYRCC 1 cut(s) 380
AccII CGCG 1 cut(s) 169
AciI CCGC 4 cut(s) 161, 169, 317, 377
AcsI RAATTY 3 cut(s) 113, 128, 515
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 2 cut(s) 201, 398
AgsI TTSAA 5 cut(s) 7, 59, 355, 490, 563
AjnI CCWGG 2 cut(s) 121, 447
AluBI AGCT 3 cut(s) 14, 327, 397
AluI AGCT 3 cut(s) 14, 327, 397
Alw21I GWGCWC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 275
ApeKI GCWGC 3 cut(s) 205, 248, 280
ApoI RAATTY 3 cut(s) 113, 128, 515
AspLEI GCGC 2 cut(s) 169, 483
AspS9I GGNCC 2 cut(s) 314, 546
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 3 cut(s) 238, 249, 314
AvaII GGWCC 2 cut(s) 314, 546
AxyI CCTNAGG 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 192, 260, 292
BccI CCATC 2 cut(s) 613, 620
BciT130I CCWGG 2 cut(s) 123, 449
BciVI GTATCC 2 cut(s) 445, 500
BclI TGATCA 1 cut(s) 81
BcnI CCSGG 1 cut(s) 340
BfaI CTAG 3 cut(s) 179, 398, 425
BfmI CTRYAG 3 cut(s) 261, 286, 330
BfuAI ACCTGC 3 cut(s) 260, 268, 584
BfuI GTATCC 2 cut(s) 445, 500
BisI GCNGC 3 cut(s) 206, 249, 281
BlsI GCNGC 3 cut(s) 207, 250, 282
Bme1390I CCNGG 3 cut(s) 123, 340, 449
Bme18I GGWCC 2 cut(s) 314, 546
BmgT120I GGNCC 2 cut(s) 314, 546
BmiI GGNNCC 3 cut(s) 382, 547, 598
BmrFI CCNGG 3 cut(s) 123, 340, 449
BpmI CTGGAG 3 cut(s) 144, 164, 292
Bpu10I CCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 398
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 147, 309, 484
Bse21I CCTNAGG 1 cut(s) 462
Bse3DI GCAATG 1 cut(s) 410
BseBI CCWGG 2 cut(s) 123, 449
BseDI CCNNGG 1 cut(s) 338
BseLI CCNNNNNNNGG 2 cut(s) 201, 398
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 2 cut(s) 384, 476
BseNI ACTGG 3 cut(s) 147, 309, 484
BseRI GAGGAG 2 cut(s) 197, 236
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 3 cut(s) 192, 260, 292
BsgI GTGCAG 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 300, 340
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 201, 398
BsmFI GGGAC 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 329, 383
Bsp143I GATC 3 cut(s) 34, 81, 209
BspACI CCGC 4 cut(s) 161, 169, 317, 377
BspCNI CTCAG 2 cut(s) 385, 475
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 3 cut(s) 382, 547, 598
BspMAI CTGCAG 2 cut(s) 265, 334
BspMI ACCTGC 3 cut(s) 260, 268, 584
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 3 cut(s) 147, 309, 484
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 3 cut(s) 34, 81, 209
Bst2UI CCWGG 2 cut(s) 123, 449
Bst4CI ACNGT 2 cut(s) 287, 443
BstC8I GCNNGC 5 cut(s) 176, 345, 379, 475, 479
BstDEI CTNAG 2 cut(s) 393, 462
BstENI CCTNNNNNAGG 1 cut(s) 396
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 2 cut(s) 169, 483
BstKTI GATC 3 cut(s) 37, 84, 212
BstMBI GATC 3 cut(s) 34, 81, 209
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 2 cut(s) 123, 449
BstSCI CCNGG 3 cut(s) 121, 338, 447
BstSFI CTRYAG 3 cut(s) 261, 286, 330
BstSLI GKGCMC 1 cut(s) 383
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 192, 260, 292
Bsu36I CCTNAGG 1 cut(s) 462
BsuI GTATCC 2 cut(s) 445, 500
BtsIMutI CAGTG 3 cut(s) 106, 283, 316
BveI ACCTGC 3 cut(s) 260, 268, 584
Cac8I GCNNGC 5 cut(s) 176, 345, 379, 475, 479
CaiI CAGNNNCTG 1 cut(s) 275
CfoI GCGC 2 cut(s) 169, 483
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 314, 546
Csp6I GTAC 1 cut(s) 652
CviAII CATG 2 cut(s) 85, 537
CviJI RGCY 9 cut(s) 14, 174, 178, 205, 251, 327, 343, 397, 473
CviKI_1 RGCY 9 cut(s) 14, 174, 178, 205, 251, 327, 343, 397, 473
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 2 cut(s) 393, 462
DpnI GATC 3 cut(s) 36, 83, 211
DpnII GATC 3 cut(s) 34, 81, 209
Ecl136II GAGCTC 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 314, 546
Eco53kI GAGCTC 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 327
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 121, 447
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 2 cut(s) 88, 540
FaiI YATR 8 cut(s) 69, 86, 119, 201, 521, 538, 602, 647
FaqI GGGAC 1 cut(s) 172
FatI CATG 2 cut(s) 84, 536
FauI CCCGC 2 cut(s) 162, 370
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 206, 249, 281
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 3 cut(s) 206, 249, 281
FspBI CTAG 3 cut(s) 179, 398, 425
GlaI GCGC 2 cut(s) 168, 482
GluI GCNGC 3 cut(s) 206, 249, 281
GsuI CTGGAG 3 cut(s) 144, 164, 292
HapII CCGG 2 cut(s) 300, 340
HhaI GCGC 2 cut(s) 169, 483
Hin1II CATG 2 cut(s) 88, 540
Hin6I GCGC 2 cut(s) 167, 481
HinP1I GCGC 2 cut(s) 167, 481
HinfI GANTC 3 cut(s) 185, 305, 529
HpaII CCGG 2 cut(s) 300, 340
HphI GGTGA 3 cut(s) 238, 249, 314
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 3 cut(s) 392, 425, 464
Hpy8I GTNNAC 1 cut(s) 314
HpyCH4III ACNGT 2 cut(s) 287, 443
HpyCH4V TGCA 6 cut(s) 263, 269, 280, 332, 593, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 393, 462
Hsp92II CATG 2 cut(s) 88, 540
HspAI GCGC 2 cut(s) 167, 481
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 3 cut(s) 34, 81, 209
Lsp1109I GCAGC 3 cut(s) 192, 260, 292
MaeI CTAG 3 cut(s) 179, 398, 425
MaeIII GTNAC 1 cut(s) 302
MalI GATC 3 cut(s) 36, 83, 211
MboI GATC 3 cut(s) 34, 81, 209
MboII GAAGA 2 cut(s) 47, 607
MhlI GDGCHC 2 cut(s) 329, 383
MluCI AATT 7 cut(s) 76, 113, 128, 467, 515, 587, 636
MlyI GAGTC 2 cut(s) 194, 299
MmeI TCCRAC 1 cut(s) 198
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 2 cut(s) 66, 426
MspI CCGG 2 cut(s) 300, 340
MspR9I CCNGG 3 cut(s) 123, 340, 449
MvaI CCWGG 2 cut(s) 123, 449
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 340
NdeII GATC 3 cut(s) 34, 81, 209
NlaIII CATG 2 cut(s) 88, 540
NlaIV GGNNCC 3 cut(s) 382, 547, 598
NmuCI GTSAC 1 cut(s) 302
PaqCI CACCTGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 529
PfoI TCCNGGA 1 cut(s) 447
PkrI GCNGC 3 cut(s) 207, 250, 282
Ple19I CGATCG 1 cut(s) 212
PleI GAGTC 2 cut(s) 193, 299
PpsI GAGTC 2 cut(s) 193, 299
PpuMI RGGWCCY 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 546
Psp6I CCWGG 2 cut(s) 121, 447
PspGI CCWGG 2 cut(s) 121, 447
PspN4I GGNNCC 3 cut(s) 382, 547, 598
PspPI GGNCC 2 cut(s) 314, 546
PspPPI RGGWCCY 1 cut(s) 546
PsrI GAACNNNNNNTAC 2 cut(s) 347, 379
PstI CTGCAG 2 cut(s) 265, 334
PstNI CAGNNNCTG 1 cut(s) 275
PvuI CGATCG 1 cut(s) 212
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 2 cut(s) 66, 426
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 3 cut(s) 206, 249, 281
Sau3AI GATC 3 cut(s) 34, 81, 209
Sau96I GGNCC 2 cut(s) 314, 546
SchI GAGTC 2 cut(s) 194, 299
ScrFI CCNGG 3 cut(s) 123, 340, 449
SduI GDGCHC 2 cut(s) 329, 383
SfcI CTRYAG 3 cut(s) 261, 286, 330
SgrAI CRCCGGYG 1 cut(s) 299
SinI GGWCC 2 cut(s) 314, 546
SmiMI CAYNNNNRTG 2 cut(s) 66, 426
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 7 cut(s) 76, 113, 128, 467, 515, 587, 636
SsiI CCGC 4 cut(s) 161, 169, 317, 377
SspMI CTAG 3 cut(s) 179, 398, 425
SstI GAGCTC 1 cut(s) 329
StyD4I CCNGG 3 cut(s) 121, 338, 447
TaaI ACNGT 2 cut(s) 287, 443
TaqI TCGA 2 cut(s) 212, 618
TasI AATT 7 cut(s) 76, 113, 128, 467, 515, 587, 636
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 3 cut(s) 106, 290, 316
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 3 cut(s) 205, 248, 280
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 39, 410
TspRI CASTG 3 cut(s) 106, 290, 316
VpaK11BI GGWCC 2 cut(s) 314, 546
XagI CCTNNNNNAGG 1 cut(s) 396
XapI RAATTY 3 cut(s) 113, 128, 515
XbaI TCTAGA 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XspI CTAG 3 cut(s) 179, 398, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.