RchiOBHm_Chr4g0414331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017648
Physical Location & Seq
Reverse (-)
38802895 .. 38805286
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38476

Sequence Viewer

Length: 456 bp
ATGGCGACCCCTCGCTCACTCTACCGTACACTCCGCCCCTTCTCCACAACCACTAGACCCTCTCGCCATTTCTCCGATCCCAAAGAGGAGGCGAAGCTAGCAGCGCTGCGCAGGTACTACAATCTACTGGTGCTGCGCAGAGACTACGCGAAGCATGTGAAGGAGGTCCGCGTCAAGTCCATCATGGAGGTGGAGCTCATGAGGCTCGAGATGCTCCGCGTCGATGAGGCCCGTAAGGAAGCCCAGAATGAGCAGACCAGGAGGCTCAAGGCTGAGGCCGCCAGGGTTCGCGCCCAAAAGCGGGAGGCTGCCAAGCACGAGACGGAACAAGCACTATTAAAACAGAAAGCAGAAAAGCTTGAGAATTTGAAGAAGAAAGAAATGCTTAGGGAAGAAAAGAAAAGAGAGAAGAATGGACTGCTGCGGCAGAGTTCCTCTGGGATCAAGGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.93

Weight (kDa)

10.32

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13580
rosa_chinensis RchiOBHm_Chr4g0414331
rosa_laevigata RLG00000008157
rosa_multiflora Rmu_sc0005196.1_g000009 Rmu_sc0041188.1_g000001
rosa_roxburghii Rroxscaffold_5G00358200
rosa_rugosa Rorug04G0126900
rosa_samantha Rh4AG185000 Rh4BG184600 Rh4CG197900 Rh4DG182200
rosa_wichuraiana Rw4G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 110, 137
Acc36I ACCTGC 1 cut(s) 102
AccII CGCG 4 cut(s) 149, 171, 219, 291
AciI CCGC 6 cut(s) 34, 169, 217, 279, 301, 424
AclWI GGATC 2 cut(s) 71, 449
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 2 cut(s) 28, 116
AfeI AGCGCT 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 300, 301
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 2 cut(s) 257, 281
AluBI AGCT 3 cut(s) 97, 196, 358
AluI AGCT 3 cut(s) 97, 196, 358
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 135, 314
AlwI GGATC 2 cut(s) 71, 449
Ama87I CYCGRG 1 cut(s) 206
Aor51HI AGCGCT 1 cut(s) 105
AoxI GGCC 2 cut(s) 228, 276
ApeKI GCWGC 5 cut(s) 101, 106, 133, 308, 421
ApoI RAATTY 1 cut(s) 364
AspLEI GCGC 4 cut(s) 106, 111, 138, 293
AspS9I GGNCC 2 cut(s) 166, 229
AsuNHI GCTAGC 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 5 cut(s) 93, 113, 120, 295, 408
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 259, 283
BcoDI GTCTC 2 cut(s) 135, 314
BfaI CTAG 2 cut(s) 54, 98
BfoI RGCGCY 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 102
BisI GCNGC 7 cut(s) 102, 107, 134, 279, 309, 422, 425
BlsI GCNGC 7 cut(s) 103, 108, 135, 280, 310, 423, 426
Bme1390I CCNGG 2 cut(s) 259, 283
Bme18I GGWCC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 166, 229
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 2 cut(s) 259, 283
BmsI GCATC 1 cut(s) 201
BmtI GCTAGC 1 cut(s) 101
Bpu10I CCTNAGC 2 cut(s) 273, 386
BpuEI CTTGAG 2 cut(s) 251, 380
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 301
Bse1I ACTGG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 259, 283
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 300, 301
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 5 cut(s) 93, 113, 120, 295, 408
Bsh1236I CGCG 4 cut(s) 149, 171, 219, 291
BshFI GGCC 2 cut(s) 230, 278
BsiHKAI GWGCWC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 206
BslI CCNNNNNNNGG 2 cut(s) 300, 301
BsmAI GTCTC 2 cut(s) 135, 314
BsmBI CGTCTC 1 cut(s) 314
BsnI GGCC 2 cut(s) 230, 278
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 76, 441
BspACI CCGC 6 cut(s) 34, 169, 217, 279, 301, 424
BspANI GGCC 2 cut(s) 230, 278
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 4 cut(s) 149, 171, 219, 291
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 450
BspMI ACCTGC 1 cut(s) 102
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 2 cut(s) 71, 449
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 76, 441
BssSI CACGAG 1 cut(s) 317
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 2 cut(s) 259, 283
Bst4CI ACNGT 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 273, 386
BstFNI CGCG 4 cut(s) 149, 171, 219, 291
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 4 cut(s) 106, 111, 138, 293
BstKTI GATC 2 cut(s) 79, 444
BstMAI GTCTC 2 cut(s) 135, 314
BstMBI GATC 2 cut(s) 76, 441
BstMWI GCNNNNNNNGC 5 cut(s) 98, 103, 202, 211, 278
BstNI CCWGG 2 cut(s) 259, 283
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 257, 281
BstUI CGCG 4 cut(s) 149, 171, 219, 291
BstV1I GCAGC 5 cut(s) 93, 113, 120, 295, 408
BsuRI GGCC 2 cut(s) 230, 278
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 198
CfoI GCGC 4 cut(s) 106, 111, 138, 293
Cfr13I GGNCC 2 cut(s) 166, 229
CseI GACGC 2 cut(s) 160, 208
Csp6I GTAC 2 cut(s) 27, 115
CviAII CATG 3 cut(s) 155, 184, 199
CviQI GTAC 2 cut(s) 27, 115
DdeI CTNAG 2 cut(s) 273, 386
DpnI GATC 2 cut(s) 78, 443
DpnII GATC 2 cut(s) 76, 441
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 166
Eco47III AGCGCT 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 257, 281
EcoT38I GRGCYC 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 3 cut(s) 158, 187, 202
FaiI YATR 4 cut(s) 156, 185, 200, 454
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 3 cut(s) 154, 183, 198
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 7 cut(s) 102, 107, 134, 279, 309, 422, 425
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 7 cut(s) 102, 107, 134, 279, 309, 422, 425
FspBI CTAG 2 cut(s) 54, 98
FspI TGCGCA 2 cut(s) 110, 137
GlaI GCGC 4 cut(s) 105, 110, 137, 292
GluI GCNGC 7 cut(s) 102, 107, 134, 279, 309, 422, 425
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 2 cut(s) 230, 278
HgaI GACGC 2 cut(s) 160, 208
HhaI GCGC 4 cut(s) 106, 111, 138, 293
Hin1II CATG 3 cut(s) 158, 187, 202
Hin6I GCGC 4 cut(s) 104, 109, 136, 291
HinP1I GCGC 4 cut(s) 104, 109, 136, 291
HindIII AAGCTT 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 199, 208
Hpy8I GTNNAC 1 cut(s) 29
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 49, 154
HpyCH4III ACNGT 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 103, 202, 211, 278
HpyF3I CTNAG 2 cut(s) 273, 386
Hsp92II CATG 3 cut(s) 158, 187, 202
HspAI GCGC 4 cut(s) 104, 109, 136, 291
Kzo9I GATC 2 cut(s) 76, 441
LmnI GCTCC 2 cut(s) 193, 219
LpnPI CCDG 8 cut(s) 97, 113, 244, 257, 268, 271, 295, 423
Lsp1109I GCAGC 5 cut(s) 93, 113, 120, 295, 408
LweI GCATC 1 cut(s) 201
MaeI CTAG 2 cut(s) 54, 98
MalI GATC 2 cut(s) 78, 443
MboI GATC 2 cut(s) 76, 441
MboII GAAGA 4 cut(s) 382, 385, 404, 421
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 364
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 259, 283
MteI GCGCNGCGC 1 cut(s) 107
MvaI CCWGG 2 cut(s) 259, 283
MvnI CGCG 4 cut(s) 149, 171, 219, 291
MwoI GCNNNNNNNGC 5 cut(s) 98, 103, 202, 211, 278
NdeII GATC 2 cut(s) 76, 441
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 3 cut(s) 158, 187, 202
NlaIV GGNNCC 1 cut(s) 450
NsbI TGCGCA 2 cut(s) 110, 137
NspI RCATGY 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 198
PkrI GCNGC 7 cut(s) 103, 108, 135, 280, 310, 423, 426
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 257, 281
PspGI CCWGG 2 cut(s) 257, 281
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 2 cut(s) 166, 229
RsaI GTAC 2 cut(s) 28, 116
RsaNI GTAC 2 cut(s) 27, 115
RseI CAYNNNNRTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 7 cut(s) 102, 107, 134, 279, 309, 422, 425
Sau3AI GATC 2 cut(s) 76, 441
Sau96I GGNCC 2 cut(s) 166, 229
ScrFI CCNGG 2 cut(s) 259, 283
SduI GDGCHC 1 cut(s) 198
SetI ASST 6 cut(s) 99, 116, 168, 192, 198, 360
SfaNI GCATC 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 3 cut(s) 206, 266, 359
SmoI CTYRAG 3 cut(s) 206, 266, 359
Sse9I AATT 1 cut(s) 364
SsiI CCGC 6 cut(s) 34, 169, 217, 279, 301, 424
SspMI CTAG 2 cut(s) 54, 98
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 257, 281
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 207, 222
TasI AATT 1 cut(s) 364
TauI GCSGC 2 cut(s) 281, 427
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TseI GCWGC 5 cut(s) 101, 106, 133, 308, 421
TspGWI ACGGA 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 206
XspI CTAG 2 cut(s) 54, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.