Rroxscaffold_5G00358200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017648
Physical Location & Seq
Reverse (-)
38258683 .. 38260890
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358200.1

Sequence Viewer

Length: 477 bp
ATGGCGACCCCTCGCTCACTCTACCGTACCCTCCGCCCCTTCTCCACAACCACTAGACCCTCTCGCCATTTCTCCTATCCCAAGGAGGAGGAGGCGAAGCTAGCGGAGCTGCGCAGGTACTACAATCTCCTGGTGCTGCGCAGAGACTACGCCAAGCATGTGAAGGAGGTCCGCGTCAAGTCCATCATGGAGGTGGAGCTCATGAGGCTCGAGATGCTCCGCGTCGACGAGGCCCGTAAGGAAGCCCAGAATGAGCAGACCAGGAGGCTCAAGGCTGAGGCCGCCAGGGTTCGCGCCCAAAAGCGGGAGGCTGCCAAGCACGAGACGGAACAAGCACTATTAAAACAGAAAGCAGAAAAGCTTGAGAATTTGAAGAAGAAAGAAATGCTTAGGGAAGAAAAGAAAAGAGAGAAGAATGGACTGCTGCGGCAAAGTTCCTCTGGGATCAAGGAACCAGAACTGGAAAAGAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.9

Weight (kDa)

10.12

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13580
rosa_chinensis RchiOBHm_Chr4g0414331
rosa_laevigata RLG00000008157
rosa_multiflora Rmu_sc0005196.1_g000009 Rmu_sc0041188.1_g000001
rosa_roxburghii Rroxscaffold_5G00358200
rosa_rugosa Rorug04G0126900
rosa_samantha Rh4AG185000 Rh4BG184600 Rh4CG197900 Rh4DG182200
rosa_wichuraiana Rw4G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 113, 140
Acc36I ACCTGC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 225
AccII CGCG 3 cut(s) 174, 222, 294
AciI CCGC 7 cut(s) 34, 104, 172, 220, 282, 304, 427
AclWI GGATC 1 cut(s) 452
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 2 cut(s) 28, 119
AfiI CCNNNNNNNGG 2 cut(s) 303, 304
AgsI TTSAA 1 cut(s) 373
AjnI CCWGG 3 cut(s) 129, 260, 284
AluBI AGCT 4 cut(s) 100, 109, 199, 361
AluI AGCT 4 cut(s) 100, 109, 199, 361
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 2 cut(s) 138, 317
AlwI GGATC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 231, 279
ApeKI GCWGC 4 cut(s) 109, 136, 311, 424
ApoI RAATTY 1 cut(s) 367
AspLEI GCGC 3 cut(s) 114, 141, 296
AspS9I GGNCC 2 cut(s) 169, 232
AsuNHI GCTAGC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 201
BauI CACGAG 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 4 cut(s) 96, 123, 298, 411
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 3 cut(s) 131, 262, 286
BcoDI GTCTC 2 cut(s) 138, 317
BfaI CTAG 3 cut(s) 54, 101, 475
BfuAI ACCTGC 1 cut(s) 105
BglII AGATCT 1 cut(s) 471
BisI GCNGC 6 cut(s) 110, 137, 282, 312, 425, 428
BlsI GCNGC 6 cut(s) 111, 138, 283, 313, 426, 429
Bme1390I CCNGG 3 cut(s) 131, 262, 286
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 169, 232
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 3 cut(s) 131, 262, 286
BmsI GCATC 1 cut(s) 204
BmtI GCTAGC 1 cut(s) 104
Bpu10I CCTNAGC 2 cut(s) 276, 389
BpuEI CTTGAG 2 cut(s) 254, 383
BsaJI CCNNGG 2 cut(s) 81, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 304
Bse1I ACTGG 1 cut(s) 465
BseBI CCWGG 3 cut(s) 131, 262, 286
BseDI CCNNGG 2 cut(s) 81, 285
BseLI CCNNNNNNNGG 2 cut(s) 303, 304
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 2 cut(s) 101, 104
BseXI GCAGC 4 cut(s) 96, 123, 298, 411
Bsh1236I CGCG 3 cut(s) 174, 222, 294
BshFI GGCC 2 cut(s) 233, 281
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 303, 304
BsmAI GTCTC 2 cut(s) 138, 317
BsmBI CGTCTC 1 cut(s) 317
BsnI GGCC 2 cut(s) 233, 281
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 444, 471
BspACI CCGC 7 cut(s) 34, 104, 172, 220, 282, 304, 427
BspANI GGCC 2 cut(s) 233, 281
BspCNI CTCAG 1 cut(s) 268
BspFNI CGCG 3 cut(s) 174, 222, 294
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 453
BspMI ACCTGC 1 cut(s) 105
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 1 cut(s) 452
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 2 cut(s) 81, 285
BssMI GATC 2 cut(s) 444, 471
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 3 cut(s) 131, 262, 286
Bst4CI ACNGT 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 276, 389
BstFNI CGCG 3 cut(s) 174, 222, 294
BstHHI GCGC 3 cut(s) 114, 141, 296
BstKTI GATC 2 cut(s) 447, 474
BstMAI GTCTC 2 cut(s) 138, 317
BstMBI GATC 2 cut(s) 444, 471
BstMWI GCNNNNNNNGC 5 cut(s) 101, 106, 205, 214, 281
BstNI CCWGG 3 cut(s) 131, 262, 286
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 3 cut(s) 129, 260, 284
BstUI CGCG 3 cut(s) 174, 222, 294
BstV1I GCAGC 4 cut(s) 96, 123, 298, 411
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BsuRI GGCC 2 cut(s) 233, 281
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 102
CciI TCATGA 1 cut(s) 201
CfoI GCGC 3 cut(s) 114, 141, 296
Cfr13I GGNCC 2 cut(s) 169, 232
CseI GACGC 2 cut(s) 163, 211
Csp6I GTAC 2 cut(s) 27, 118
CviAII CATG 3 cut(s) 158, 187, 202
CviQI GTAC 2 cut(s) 27, 118
DdeI CTNAG 2 cut(s) 276, 389
DpnI GATC 2 cut(s) 446, 473
DpnII GATC 2 cut(s) 444, 471
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 199
EcoRII CCWGG 3 cut(s) 129, 260, 284
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 317
FaeI CATG 3 cut(s) 161, 190, 205
FaiI YATR 3 cut(s) 159, 188, 203
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 3 cut(s) 157, 186, 201
FauI CCCGC 1 cut(s) 297
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 6 cut(s) 110, 137, 282, 312, 425, 428
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 6 cut(s) 110, 137, 282, 312, 425, 428
FspBI CTAG 3 cut(s) 54, 101, 475
FspI TGCGCA 2 cut(s) 113, 140
GlaI GCGC 3 cut(s) 113, 140, 295
GluI GCNGC 6 cut(s) 110, 137, 282, 312, 425, 428
HaeIII GGCC 2 cut(s) 233, 281
HgaI GACGC 2 cut(s) 163, 211
HhaI GCGC 3 cut(s) 114, 141, 296
Hin1II CATG 3 cut(s) 161, 190, 205
Hin6I GCGC 3 cut(s) 112, 139, 294
HinP1I GCGC 3 cut(s) 112, 139, 294
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 202, 211
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 2 cut(s) 227, 230
HpyAV CCTTC 2 cut(s) 49, 157
HpyCH4III ACNGT 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 106, 205, 214, 281
HpyF3I CTNAG 2 cut(s) 276, 389
Hsp92II CATG 3 cut(s) 161, 190, 205
HspAI GCGC 3 cut(s) 112, 139, 294
Kzo9I GATC 2 cut(s) 444, 471
LmnI GCTCC 3 cut(s) 106, 196, 222
Lsp1109I GCAGC 4 cut(s) 96, 123, 298, 411
LweI GCATC 1 cut(s) 204
MaeI CTAG 3 cut(s) 54, 101, 475
MalI GATC 2 cut(s) 446, 473
MboI GATC 2 cut(s) 444, 471
MboII GAAGA 4 cut(s) 385, 388, 407, 424
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 367
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 191
MspR9I CCNGG 3 cut(s) 131, 262, 286
MvaI CCWGG 3 cut(s) 131, 262, 286
MvnI CGCG 3 cut(s) 174, 222, 294
MwoI GCNNNNNNNGC 5 cut(s) 101, 106, 205, 214, 281
NdeII GATC 2 cut(s) 444, 471
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 3 cut(s) 161, 190, 205
NlaIV GGNNCC 1 cut(s) 453
NsbI TGCGCA 2 cut(s) 113, 140
NspI RCATGY 1 cut(s) 161
PaeR7I CTCGAG 1 cut(s) 209
PagI TCATGA 1 cut(s) 201
PkrI GCNGC 6 cut(s) 111, 138, 283, 313, 426, 429
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 129, 260, 284
PspGI CCWGG 3 cut(s) 129, 260, 284
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 2 cut(s) 169, 232
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 2 cut(s) 28, 119
RsaNI GTAC 2 cut(s) 27, 118
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 201
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 6 cut(s) 110, 137, 282, 312, 425, 428
Sau3AI GATC 2 cut(s) 444, 471
Sau96I GGNCC 2 cut(s) 169, 232
ScrFI CCNGG 3 cut(s) 131, 262, 286
SduI GDGCHC 1 cut(s) 201
SetI ASST 7 cut(s) 102, 111, 119, 171, 195, 201, 363
SfaNI GCATC 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 209
SgrDI CGTCGACG 1 cut(s) 224
SinI GGWCC 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 3 cut(s) 209, 269, 362
SmoI CTYRAG 3 cut(s) 209, 269, 362
Sse9I AATT 1 cut(s) 367
SsiI CCGC 7 cut(s) 34, 104, 172, 220, 282, 304, 427
SspMI CTAG 3 cut(s) 54, 101, 475
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 3 cut(s) 129, 260, 284
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 210, 225
TasI AATT 1 cut(s) 367
TauI GCSGC 2 cut(s) 284, 430
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TseI GCWGC 4 cut(s) 109, 136, 311, 424
TspGWI ACGGA 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 367
XceI RCATGY 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 3 cut(s) 54, 101, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.