Rh4CG197900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017648
Physical Location & Seq
Reverse (-)
42215402 .. 42217714
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG197900.1

Sequence Viewer

Length: 474 bp
ATGGCGAACCCTCGCTCACTCTACCGTACCCTCCGCCCCTTCTCCACAGCCACTAGACCCTCTCGCCATTTCTCCGGTCCCAAGGAGGAGGCGAAGCTAGCGGAGCTGCGAAGGTACTACAATCTCCTGGTGCTGCGCAGAGACTACGCGAAGCATGTGAAGGAGGTCCGCATCAAGTCCATCATGGAGGTGGAGCTCATGAGGCTCGAGATGCTCCGCGTCGATGAGGCCCGTAAGGAAGCCCAGAATGAGCAGACCAGGAGGCTCAAGGCTGAGGCCGTCAGGGTTCGCGCTCAAAAGCGGGAGGCTGCCAAGCACGAGACGGAACAAGCACTATTAAAACAGAAAGCAGAAAAGCTTGAGAATTTGAAGAAGAAAGAAATGCTTAGGGAAGAAAAGAAAAGAGAGAAGAATGGACTGCTGCGGCAGAGTTCCTCTGGGATCAAGGAACCAGAACTGGAAAAGAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.69

Weight (kDa)

10.22

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13580
rosa_chinensis RchiOBHm_Chr4g0414331
rosa_laevigata RLG00000008157
rosa_multiflora Rmu_sc0005196.1_g000009 Rmu_sc0041188.1_g000001
rosa_roxburghii Rroxscaffold_5G00358200
rosa_rugosa Rorug04G0126900
rosa_samantha Rh4AG185000 Rh4BG184600 Rh4CG197900 Rh4DG182200
rosa_wichuraiana Rw4G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 137
AccII CGCG 3 cut(s) 149, 219, 291
AciI CCGC 6 cut(s) 34, 101, 169, 217, 301, 424
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 2 cut(s) 28, 116
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 2 cut(s) 126, 257
AluBI AGCT 4 cut(s) 97, 106, 196, 358
AluI AGCT 4 cut(s) 97, 106, 196, 358
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 135, 314
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 2 cut(s) 228, 276
ApeKI GCWGC 4 cut(s) 106, 133, 308, 421
ApoI RAATTY 1 cut(s) 364
AspLEI GCGC 2 cut(s) 138, 293
AspS9I GGNCC 3 cut(s) 77, 166, 229
AsuNHI GCTAGC 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 2 cut(s) 77, 166
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 4 cut(s) 93, 120, 295, 408
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 2 cut(s) 128, 259
BcoDI GTCTC 2 cut(s) 135, 314
BfaI CTAG 3 cut(s) 54, 98, 472
BglII AGATCT 1 cut(s) 468
BisI GCNGC 5 cut(s) 107, 134, 309, 422, 425
BlsI GCNGC 5 cut(s) 108, 135, 310, 423, 426
Bme1390I CCNGG 2 cut(s) 128, 259
Bme18I GGWCC 2 cut(s) 77, 166
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 3 cut(s) 77, 166, 229
BmiI GGNNCC 2 cut(s) 79, 450
BmrFI CCNGG 2 cut(s) 128, 259
BmsI GCATC 2 cut(s) 180, 201
BmtI GCTAGC 1 cut(s) 101
Bpu10I CCTNAGC 2 cut(s) 273, 386
BpuEI CTTGAG 2 cut(s) 251, 380
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 462
BseBI CCWGG 2 cut(s) 128, 259
BseDI CCNNGG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 4 cut(s) 93, 120, 295, 408
Bsh1236I CGCG 3 cut(s) 149, 219, 291
BshFI GGCC 2 cut(s) 230, 278
BsiHKAI GWGCWC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 135, 314
BsmBI CGTCTC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 2 cut(s) 230, 278
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 441, 468
BspACI CCGC 6 cut(s) 34, 101, 169, 217, 301, 424
BspANI GGCC 2 cut(s) 230, 278
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 3 cut(s) 149, 219, 291
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 79, 450
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 441, 468
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 2 cut(s) 128, 259
Bst4CI ACNGT 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 273, 386
BstFNI CGCG 3 cut(s) 149, 219, 291
BstHHI GCGC 2 cut(s) 138, 293
BstKTI GATC 2 cut(s) 444, 471
BstMAI GTCTC 2 cut(s) 135, 314
BstMBI GATC 2 cut(s) 441, 468
BstMWI GCNNNNNNNGC 4 cut(s) 98, 103, 202, 211
BstNI CCWGG 2 cut(s) 128, 259
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 126, 257
BstUI CGCG 3 cut(s) 149, 219, 291
BstV1I GCAGC 4 cut(s) 93, 120, 295, 408
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BsuRI GGCC 2 cut(s) 230, 278
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 198
CfoI GCGC 2 cut(s) 138, 293
Cfr13I GGNCC 3 cut(s) 77, 166, 229
CseI GACGC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 27, 115
CviAII CATG 3 cut(s) 155, 184, 199
CviQI GTAC 2 cut(s) 27, 115
DdeI CTNAG 2 cut(s) 273, 386
DpnI GATC 2 cut(s) 443, 470
DpnII GATC 2 cut(s) 441, 468
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 77, 166
Eco53kI GAGCTC 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 126, 257
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 3 cut(s) 158, 187, 202
FaiI YATR 3 cut(s) 156, 185, 200
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 154, 183, 198
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 5 cut(s) 107, 134, 309, 422, 425
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 5 cut(s) 107, 134, 309, 422, 425
FspBI CTAG 3 cut(s) 54, 98, 472
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 2 cut(s) 137, 292
GluI GCNGC 5 cut(s) 107, 134, 309, 422, 425
HaeIII GGCC 2 cut(s) 230, 278
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 208
HhaI GCGC 2 cut(s) 138, 293
Hin1II CATG 3 cut(s) 158, 187, 202
Hin6I GCGC 2 cut(s) 136, 291
HinP1I GCGC 2 cut(s) 136, 291
HindIII AAGCTT 1 cut(s) 356
HpaII CCGG 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 199, 208
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 3 cut(s) 49, 105, 154
HpyCH4III ACNGT 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 103, 202, 211
HpyF3I CTNAG 2 cut(s) 273, 386
Hsp92II CATG 3 cut(s) 158, 187, 202
HspAI GCGC 2 cut(s) 136, 291
Kzo9I GATC 2 cut(s) 441, 468
LmnI GCTCC 3 cut(s) 103, 193, 219
Lsp1109I GCAGC 4 cut(s) 93, 120, 295, 408
LweI GCATC 2 cut(s) 180, 201
MaeI CTAG 3 cut(s) 54, 98, 472
MalI GATC 2 cut(s) 443, 470
MboI GATC 2 cut(s) 441, 468
MboII GAAGA 4 cut(s) 382, 385, 404, 421
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 364
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 128, 259
MvaI CCWGG 2 cut(s) 128, 259
MvnI CGCG 3 cut(s) 149, 219, 291
MwoI GCNNNNNNNGC 4 cut(s) 98, 103, 202, 211
NdeII GATC 2 cut(s) 441, 468
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 3 cut(s) 158, 187, 202
NlaIV GGNNCC 2 cut(s) 79, 450
NsbI TGCGCA 1 cut(s) 137
NspI RCATGY 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 198
PkrI GCNGC 5 cut(s) 108, 135, 310, 423, 426
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 126, 257
PspGI CCWGG 2 cut(s) 126, 257
PspN4I GGNNCC 2 cut(s) 79, 450
PspPI GGNCC 3 cut(s) 77, 166, 229
PsuI RGATCY 1 cut(s) 468
RsaI GTAC 2 cut(s) 28, 116
RsaNI GTAC 2 cut(s) 27, 115
RseI CAYNNNNRTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 5 cut(s) 107, 134, 309, 422, 425
Sau3AI GATC 2 cut(s) 441, 468
Sau96I GGNCC 3 cut(s) 77, 166, 229
ScrFI CCNGG 2 cut(s) 128, 259
SduI GDGCHC 1 cut(s) 198
SetI ASST 7 cut(s) 99, 108, 116, 168, 192, 198, 360
SfaNI GCATC 2 cut(s) 180, 201
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 2 cut(s) 77, 166
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 3 cut(s) 206, 266, 359
SmoI CTYRAG 3 cut(s) 206, 266, 359
Sse9I AATT 1 cut(s) 364
SsiI CCGC 6 cut(s) 34, 101, 169, 217, 301, 424
SspMI CTAG 3 cut(s) 54, 98, 472
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 126, 257
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 207, 222
TasI AATT 1 cut(s) 364
TauI GCSGC 1 cut(s) 427
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TseI GCWGC 4 cut(s) 106, 133, 308, 421
TspGWI ACGGA 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 77, 166
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 206
XspI CTAG 3 cut(s) 54, 98, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.