RchiOBHm_Chr4g0419161

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009531
Physical Location & Seq
Forward (+)
44679055 .. 44680345
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38910

Sequence Viewer

Length: 1005 bp
ATGATGTGGAGGGTGATATTTTTGGCATGGAAGAAGAGGGTTCATCCTTATCCTTCTCATCCAAGCCTTTTGAATCAATACCAAGAAGCCAAGATTCCACACACAGAGAAACTCAAGTGTCTCGACAAAGCTGCAATACTAGATGAATATGCCGCTAGTGAAGAAAAAAGAAGCAACCCTTGGATAGTAGCCACAGTGACTCAAGTTGAAGAGGTGAAACTGGTTTTCAAGCTCTTGCCAATCTGGTCAACATGTATTCTCTTTTGGACGGTCTACCCTCAAATGACTAGCTTCACCATTGAACAAGCGACCTTCATGAACCGGAAAGTCGGTTCCTTTGAAATCCCTTCTGGTTCCTTCTCGGCCTTTCTCTTCATCACCATTCTCCTCTTCACCTCCCTAAATGAGAAACTTTTCGTCCCCCTTGCTCGAAAACTCACCAAGAGTCCCCAAGGACTCACAAGCCTTCAGAGAGTAGGAATTGGACTAATGTTTTCAGTGGCTGCTATGATCGCTTCCGCAATAGTAGAGAAACAGAGAAGGGAGATAGGTGTTGACCAAAATACAAAAATACGTGCCTTTTGGCTTGTTCCACAATACTTCCTAGTGGGTGCTGGGGAAGCTTTTGCCTATGTAGGACAACTTGAATTTTTCATCAGAGAGGCACCAGAGAGGATGAAGTCTATGAGCACAGGGCTTTTCTTAAGCACCATCTCAATGGGGTTCTATGTAAGCAGTCAGTTGGTGACCGTGGTGGATAAAGTAACTCATAAAAGCTGGCTGAGAAGTGATCTGAACAATGCAAGGCTAGATAACTTCTATTTGCTGCTTGCAGCTCTAAGAACTTTAAATTTCCTATTTTTCCTTGCCTTTGCGATGAGACACCAGTACAAAGGCCAGCAGCACAATAACACTGATGACAGTAGCAAAGAGCTGAAGAACTCTAATGACATGATAGTTGAGGATATGGAGAAGATAAGAATCGAGGCAAAAGAGGGACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

334

Amino Acids

38.34

Weight (kDa)

9.33

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 3 - 257 9.6e-55 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 664
AccI GTMKAC 1 cut(s) 273
AciI CCGC 2 cut(s) 153, 519
AcsI RAATTY 2 cut(s) 647, 850
AcuI CTGAAG 2 cut(s) 452, 956
AfaI GTAC 1 cut(s) 890
AflII CTTAAG 1 cut(s) 703
AflIII ACRYGT 1 cut(s) 251
AgsI TTSAA 6 cut(s) 73, 209, 229, 302, 341, 647
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AloI GAACNNNNNNTCC 2 cut(s) 316, 348
AluBI AGCT 7 cut(s) 131, 232, 291, 623, 777, 836, 934
AluI AGCT 7 cut(s) 131, 232, 291, 623, 777, 836, 934
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 2 cut(s) 125, 874
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 2 cut(s) 363, 895
ApeKI GCWGC 5 cut(s) 131, 503, 826, 833, 901
ApoI RAATTY 2 cut(s) 647, 850
Asp700I GAANNNNTTC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 998
AsuHPI GGTGA 7 cut(s) 25, 226, 286, 370, 385, 430, 757
AvaII GGWCC 1 cut(s) 998
BanI GGYRCC 1 cut(s) 664
Bbv12I GWGCWC 1 cut(s) 692
BbvI GCAGC 5 cut(s) 118, 490, 813, 845, 913
BccI CCATC 1 cut(s) 719
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcoDI GTCTC 2 cut(s) 125, 874
BfaI CTAG 6 cut(s) 140, 156, 288, 605, 809, 1003
BfrI CTTAAG 1 cut(s) 703
BisI GCNGC 6 cut(s) 132, 153, 504, 827, 834, 902
BlsI GCNGC 6 cut(s) 133, 154, 505, 828, 835, 903
Bme18I GGWCC 1 cut(s) 998
BmgT120I GGNCC 1 cut(s) 998
BmiI GGNNCC 5 cut(s) 334, 355, 666, 999, 1000
BpuEI CTTGAG 2 cut(s) 98, 186
BsaAI YACGTR 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 980
BsaJI CCNNGG 3 cut(s) 179, 451, 750
BsaWI WCCGGW 1 cut(s) 321
Bse1I ACTGG 2 cut(s) 225, 886
Bse8I GATNNNNATC 1 cut(s) 980
BseDI CCNNGG 3 cut(s) 179, 451, 750
BseGI GGATG 3 cut(s) 43, 58, 681
BseJI GATNNNNATC 1 cut(s) 980
BseMII CTCAG 1 cut(s) 773
BseNI ACTGG 2 cut(s) 225, 886
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 5 cut(s) 118, 490, 813, 845, 913
BseYI CCCAGC 1 cut(s) 614
BshFI GGCC 2 cut(s) 365, 897
BshNI GGYRCC 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 692
BsiSI CCGG 1 cut(s) 322
BslFI GGGAC 2 cut(s) 404, 432
BsmAI GTCTC 2 cut(s) 125, 874
BsmFI GGGAC 2 cut(s) 404, 432
BsnI GGCC 2 cut(s) 365, 897
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 2 cut(s) 510, 790
BspACI CCGC 2 cut(s) 153, 519
BspANI GGCC 2 cut(s) 365, 897
BspCNI CTCAG 1 cut(s) 774
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 5 cut(s) 334, 355, 666, 999, 1000
BspT107I GGYRCC 1 cut(s) 664
BspTI CTTAAG 1 cut(s) 703
BsrI ACTGG 2 cut(s) 225, 886
BssECI CCNNGG 3 cut(s) 179, 451, 750
BssMI GATC 2 cut(s) 510, 790
BssT1I CCWWGG 2 cut(s) 179, 451
Bst4CI ACNGT 4 cut(s) 196, 271, 751, 923
Bst6I CTCTTC 4 cut(s) 29, 204, 377, 395
BstAFI CTTAAG 1 cut(s) 703
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 779, 831, 899
BstDEI CTNAG 2 cut(s) 782, 839
BstDSI CCRYGG 1 cut(s) 750
BstEII GGTNACC 1 cut(s) 745
BstF5I GGATG 3 cut(s) 43, 58, 681
BstKTI GATC 2 cut(s) 513, 793
BstMAI GTCTC 2 cut(s) 125, 874
BstMBI GATC 2 cut(s) 510, 790
BstMWI GCNNNNNNNGC 2 cut(s) 512, 620
BstNSI RCATGY 1 cut(s) 255
BstPI GGTNACC 1 cut(s) 745
BstV1I GCAGC 5 cut(s) 118, 490, 813, 845, 913
BstXI CCANNNNNNTGG 1 cut(s) 718
BsuRI GGCC 2 cut(s) 365, 897
BtgI CCRYGG 1 cut(s) 750
BtgZI GCGATG 1 cut(s) 890
BtsCI GGATG 3 cut(s) 43, 58, 681
BtsIMutI CAGTG 3 cut(s) 201, 504, 912
Cac8I GCNNGC 3 cut(s) 779, 831, 899
CaiI CAGNNNCTG 1 cut(s) 503
CciI TCATGA 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 998
Csp6I GTAC 1 cut(s) 889
CviAII CATG 4 cut(s) 27, 252, 316, 952
CviQI GTAC 1 cut(s) 889
DdeI CTNAG 2 cut(s) 782, 839
DpnI GATC 2 cut(s) 512, 792
DpnII GATC 2 cut(s) 510, 790
DraI TTTAAA 1 cut(s) 849
Eam1104I CTCTTC 4 cut(s) 29, 204, 377, 395
EarI CTCTTC 4 cut(s) 29, 204, 377, 395
Eco130I CCWWGG 2 cut(s) 179, 451
Eco47I GGWCC 1 cut(s) 998
Eco57I CTGAAG 2 cut(s) 452, 956
Eco91I GGTNACC 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 998
EcoO65I GGTNACC 1 cut(s) 745
EcoT14I CCWWGG 2 cut(s) 179, 451
ErhI CCWWGG 2 cut(s) 179, 451
FaeI CATG 4 cut(s) 30, 255, 319, 955
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FaqI GGGAC 2 cut(s) 404, 432
FatI CATG 4 cut(s) 26, 251, 315, 951
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 132, 153, 504, 827, 834, 902
FokI GGATG 3 cut(s) 30, 45, 688
Fsp4HI GCNGC 6 cut(s) 132, 153, 504, 827, 834, 902
FspBI CTAG 6 cut(s) 140, 156, 288, 605, 809, 1003
GluI GCNGC 6 cut(s) 132, 153, 504, 827, 834, 902
GsaI CCCAGC 1 cut(s) 618
HaeIII GGCC 2 cut(s) 365, 897
HapII CCGG 1 cut(s) 322
Hin1II CATG 4 cut(s) 30, 255, 319, 955
HincII GTYRAC 2 cut(s) 249, 556
HindII GTYRAC 2 cut(s) 249, 556
HindIII AAGCTT 1 cut(s) 621
HinfI GANTC 6 cut(s) 73, 94, 199, 445, 456, 981
HpaII CCGG 1 cut(s) 322
HphI GGTGA 7 cut(s) 25, 226, 286, 370, 385, 430, 757
Hpy166II GTNNAC 3 cut(s) 249, 274, 556
Hpy188I TCNGA 3 cut(s) 471, 659, 795
Hpy188III TCNNGA 2 cut(s) 122, 316
Hpy8I GTNNAC 3 cut(s) 249, 274, 556
HpyAV CCTTC 6 cut(s) 63, 322, 357, 367, 476, 534
HpyCH4III ACNGT 4 cut(s) 196, 271, 751, 923
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 3 cut(s) 134, 803, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 620
HpyF3I CTNAG 2 cut(s) 782, 839
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 4 cut(s) 30, 255, 319, 955
KflI GGGWCCC 1 cut(s) 998
Kzo9I GATC 2 cut(s) 510, 790
Lsp1109I GCAGC 5 cut(s) 118, 490, 813, 845, 913
MaeI CTAG 6 cut(s) 140, 156, 288, 605, 809, 1003
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 3 cut(s) 196, 745, 763
MalI GATC 2 cut(s) 512, 792
MboI GATC 2 cut(s) 510, 790
MboII GAAGA 8 cut(s) 43, 46, 173, 221, 364, 382, 949, 985
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 3 cut(s) 480, 647, 850
MlyI GAGTC 3 cut(s) 193, 450, 454
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 2 cut(s) 704, 848
MslI CAYNNNNRTG 1 cut(s) 716
MspCI CTTAAG 1 cut(s) 703
MspI CCGG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 512, 620
NdeII GATC 2 cut(s) 510, 790
NlaIII CATG 4 cut(s) 30, 255, 319, 955
NlaIV GGNNCC 5 cut(s) 334, 355, 666, 999, 1000
NmeAIII GCCGAG 1 cut(s) 341
NmuCI GTSAC 2 cut(s) 196, 745
NspI RCATGY 1 cut(s) 255
PagI TCATGA 1 cut(s) 315
PciI ACATGT 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 3 cut(s) 73, 94, 981
PkrI GCNGC 6 cut(s) 133, 154, 505, 828, 835, 903
PleI GAGTC 3 cut(s) 193, 450, 453
PpsI GAGTC 3 cut(s) 193, 450, 453
Ppu21I YACGTR 1 cut(s) 575
PpuMI RGGWCCY 1 cut(s) 998
PscI ACATGT 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 998
PspEI GGTNACC 1 cut(s) 745
PspFI CCCAGC 1 cut(s) 614
PspN4I GGNNCC 5 cut(s) 334, 355, 666, 999, 1000
PspPI GGNCC 1 cut(s) 998
PspPPI RGGWCCY 1 cut(s) 998
PstNI CAGNNNCTG 1 cut(s) 503
RsaI GTAC 1 cut(s) 890
RsaNI GTAC 1 cut(s) 889
RseI CAYNNNNRTG 1 cut(s) 716
SaqAI TTAA 2 cut(s) 704, 848
SatI GCNGC 6 cut(s) 132, 153, 504, 827, 834, 902
Sau3AI GATC 2 cut(s) 510, 790
Sau96I GGNCC 1 cut(s) 998
SchI GAGTC 3 cut(s) 193, 450, 454
SduI GDGCHC 1 cut(s) 692
SinI GGWCC 1 cut(s) 998
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 3 cut(s) 113, 201, 703
SmoI CTYRAG 3 cut(s) 113, 201, 703
Sse9I AATT 3 cut(s) 480, 647, 850
SsiI CCGC 2 cut(s) 153, 519
SspMI CTAG 6 cut(s) 140, 156, 288, 605, 809, 1003
StyI CCWWGG 2 cut(s) 179, 451
TaaI ACNGT 4 cut(s) 196, 271, 751, 923
TaiI ACGT 1 cut(s) 577
TaqI TCGA 3 cut(s) 123, 430, 984
TasI AATT 3 cut(s) 480, 647, 850
TatI WGTACW 1 cut(s) 888
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 3 cut(s) 73, 94, 981
Tru1I TTAA 2 cut(s) 704, 848
Tru9I TTAA 2 cut(s) 704, 848
TscAI CASTG 3 cut(s) 201, 504, 919
TseFI GTSAC 2 cut(s) 196, 745
TseI GCWGC 5 cut(s) 131, 503, 826, 833, 901
Tsp45I GTSAC 2 cut(s) 196, 745
TspDTI ATGAA 7 cut(s) 32, 159, 304, 332, 364, 643, 692
TspRI CASTG 3 cut(s) 201, 504, 919
Vha464I CTTAAG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 998
XapI RAATTY 2 cut(s) 647, 850
XceI RCATGY 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 6 cut(s) 140, 156, 288, 605, 809, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.