Rh2DG556700

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
78647118 .. 78665269
18152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG556700.1

Sequence Viewer

Length: 1770 bp
ATGGTTCTGGTGTCGAGGAACAGTGAGAAAGATGGTGCAGCAAATGATGGGAGTATGGTGGATTTTCGAGGAAACCCTATCGACAAGTCCAGAACTGGTGGATGGCTTGCTGCAGGGCTTATCCTAGTAACTGAGCTCTCTGAGAGGATCTGTGTGATGGGCATATCTATGAATTTAGTGACTTACTTGGTTGGCAATTTACATTTAACTTCAGCAAAGTCTGCAACCATAGTCACCAATTTCATGGGCACTTTGAATCTCCTTGGCCTTCTTGGTGGTTTCGTTGCAGATGCCAAACTTGGACGCTACCTGACTGTTCTACTCTCTGCAACCATAACTGCTCTTGGGATAACTTTGTTAACAATAGCCACATCCATTCCAAGAATGAGACCCCCTGCGTGTGAAGGCAACCAAGAATGCATTGAGGCCACAGGCAGCCAATTAGTCCTGCTCTATGCTGCCTTATACCTTACAGCACTAGGTGGCGGAGGAATAAAATCTAACGTCTCAGGTTTTGGCTCTGACCAATTTGATTCCTCAGACCCAAAGGAAGAGAAGTCCATGATCTTTTTCTTCAACAGGTTCTATTTTGGCATCAGCATTGGTTCTCTGTTTGCGGTGCTCGTGCTGGTGTATATACAAGACAATGTTGGCCGAGGACTCGGTTATGGAATATCAGCAGGGACAGTGGGGATTGCACTCATCGTGTTACTCTTGGGAACACCATTCTATCGATTCAAAAAGCCTCGAGGCAGCCCTTTGACTATGATATGGAGGGTGATATTTTTGGCATGGAAAAAGAGGGTTCATCCTTATCCTTCTCATCCAAGCCTTTTGAATCAATACCAAGAAGCCAAGATTCCACACACAGAGAGACTCAAGTGTCTCGACAAAGCTGCAATACTAGATGAATATGCTGCTAGTGAAGAAAATAGAAGCAACCATTGGTTAGTATCCACAGTGACTCAAGTTGAAGAGGTGAAACTGGTTTTCATGCTCTTGCCAATCTGGTCAACATGTATTCTCTTTTGGACCGTCTACTCTCAAATGACTACCTTCACCATTGAACAAGCGACCTTCATGAACCGGAAAGTCAGTTCCTTTGAAATCCCTTCCGGTTCCTTCTCAGCCTTTCTCTTCATCACCATTCTCCTCTTCACCTCCCTAAATGAGCGACTTTTCGTCCCCCTTGCTCGGAAAATCACCAAGAGTCCCCAAGGACTCACAAGCCTTCAGAGAGTAGGAATTGGACTATTCTTTTCAGTGGCTGCTATGATCACTTCCGCAATAGTAGAGAAACAGAGAAGGAAAATAGCTGTTGACCAAAATACAAAAATACGTGCCTTTTGGCTTGTTCCACAATACTTCCTAGTGGGTGCTGGGGAAGCTTTTGTCTATGTAGGACAACTTGAATTTTTCATCAGAGAGGCACCGGAGAGGATGAAGTCTATGAGCACAGGGCTTTTCTTAAGCACCATCTCAATGGGGTTCTATGTAAGCAGTCTGTTGGTGACTGTGGTGGATAAAGTAACTCATAAGAGCTGGCTGAGAAGTAATTTGAACAATGCAAGGCTAGATAACTTCTATTTGCTGCTTGCAGCTCTAGGAACTGTAAATTTCTTAGTTTTCCTTGCCTTCGCTATGAGACACCAGTACAAAGGCCAGCAGCACAATAACACTGATGACAGTGGCAAAGAGCTGAAGAACTCTAATGACATGATAGTTGAGGATATGGAGAAGATAAGAATTGAGGCAAAAGAGGGACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

589

Amino Acids

65.31

Weight (kDa)

9.24

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 53 - 496 8.8e-08 Major Facilitator Superfamily
PTR2 PF00854 103 - 512 3.6e-105 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 882
AbsI CCTCGAGG 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 1429
AccI GTMKAC 1 cut(s) 1038
AciI CCGC 3 cut(s) 486, 617, 1284
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 3 cut(s) 172, 1412, 1615
AcuI CTGAAG 3 cut(s) 195, 1217, 1721
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 1 cut(s) 1655
AfiI CCNNNNNNNGG 1 cut(s) 1194
AflII CTTAAG 1 cut(s) 1468
AflIII ACRYGT 1 cut(s) 1016
AgsI TTSAA 9 cut(s) 256, 577, 739, 838, 974, 1067, 1106, 1412, 1561
AhdI GACNNNNNGTC 1 cut(s) 1181
AjuI GAANNNNNNNTTGG 2 cut(s) 928, 960
AloI GAACNNNNNNTCC 2 cut(s) 1081, 1113
AluBI AGCT 7 cut(s) 136, 896, 1316, 1388, 1542, 1601, 1699
AluI AGCT 7 cut(s) 136, 896, 1316, 1388, 1542, 1601, 1699
Alw21I GWGCWC 3 cut(s) 138, 624, 1457
Alw26I GTCTC 5 cut(s) 382, 511, 868, 890, 1639
AlwI GGATC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 1268
Ama87I CYCGRG 1 cut(s) 747
AoxI GGCC 4 cut(s) 265, 426, 652, 1660
ApoI RAATTY 3 cut(s) 172, 1412, 1615
AspS9I GGNCC 2 cut(s) 1032, 1763
AsuHPI GGTGA 8 cut(s) 226, 790, 991, 1051, 1135, 1150, 1195, 1522
AvaI CYCGRG 1 cut(s) 747
AvaII GGWCC 2 cut(s) 1032, 1763
BaeGI GKGCMC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 1429
BanII GRGCYC 1 cut(s) 138
BauI CACGAG 1 cut(s) 623
Bbv12I GWGCWC 3 cut(s) 138, 624, 1457
BccI CCATC 5 cut(s) 26, 41, 96, 151, 1484
BcgI CGANNNNNNTGC 2 cut(s) 878, 912
BciVI GTATCC 1 cut(s) 964
BclI TGATCA 1 cut(s) 1275
BcoDI GTCTC 5 cut(s) 382, 511, 868, 890, 1639
BfaI CTAG 8 cut(s) 125, 479, 905, 921, 1370, 1574, 1604, 1768
BfmI CTRYAG 1 cut(s) 111
BfrI CTTAAG 1 cut(s) 1468
BfuI GTATCC 1 cut(s) 964
Bme18I GGWCC 2 cut(s) 1032, 1763
BmeRI GACNNNNNGTC 1 cut(s) 1181
BmeT110I CYCGRG 1 cut(s) 747
BmgT120I GGNCC 2 cut(s) 1032, 1763
BmiI GGNNCC 4 cut(s) 1120, 1431, 1764, 1765
BmsI GCATC 2 cut(s) 280, 603
BpuEI CTTGAG 2 cut(s) 863, 951
Bsa29I ATCGAT 1 cut(s) 733
BsaAI YACGTR 1 cut(s) 1340
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 262, 655, 1216
BsaWI WCCGGW 3 cut(s) 1086, 1115, 1432
Bsc4I CCNNNNNNNGG 1 cut(s) 1194
Bse1I ACTGG 3 cut(s) 100, 990, 1651
BseCI ATCGAT 1 cut(s) 733
BseDI CCNNGG 3 cut(s) 262, 655, 1216
BseGI GGATG 5 cut(s) 107, 371, 808, 823, 1446
BseLI CCNNNNNNNGG 1 cut(s) 1194
BseMII CTCAG 6 cut(s) 123, 132, 522, 552, 1140, 1538
BseNI ACTGG 3 cut(s) 100, 990, 1651
BseRI GAGGAG 1 cut(s) 1142
BseSI GKGCMC 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 1379
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 4 cut(s) 267, 428, 654, 1662
BshNI GGYRCC 1 cut(s) 1429
BshVI ATCGAT 1 cut(s) 733
BsiHKAI GWGCWC 3 cut(s) 138, 624, 1457
BsiHKCI CYCGRG 1 cut(s) 747
BsiSI CCGG 3 cut(s) 1087, 1116, 1433
BslFI GGGAC 3 cut(s) 697, 1169, 1197
BslI CCNNNNNNNGG 1 cut(s) 1194
BsmAI GTCTC 5 cut(s) 382, 511, 868, 890, 1639
BsmBI CGTCTC 1 cut(s) 511
BsmFI GGGAC 3 cut(s) 697, 1169, 1197
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 4 cut(s) 267, 428, 654, 1662
Bso31I GGTCTC 1 cut(s) 382
BsoBI CYCGRG 1 cut(s) 747
Bsp1286I GDGCHC 4 cut(s) 138, 251, 624, 1457
Bsp143I GATC 3 cut(s) 147, 564, 1275
BspACI CCGC 3 cut(s) 486, 617, 1284
BspANI GGCC 4 cut(s) 267, 428, 654, 1662
BspCNI CTCAG 6 cut(s) 124, 133, 521, 551, 1139, 1539
BspDI ATCGAT 1 cut(s) 733
BspHI TCATGA 1 cut(s) 1080
BspLI GGNNCC 4 cut(s) 1120, 1431, 1764, 1765
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 1429
BspTI CTTAAG 1 cut(s) 1468
BspTNI GGTCTC 1 cut(s) 382
BsrI ACTGG 3 cut(s) 100, 990, 1651
BssECI CCNNGG 3 cut(s) 262, 655, 1216
BssMI GATC 3 cut(s) 147, 564, 1275
BssSI CACGAG 1 cut(s) 623
BssT1I CCWWGG 2 cut(s) 262, 1216
Bst2BI CACGAG 1 cut(s) 623
Bst4CI ACNGT 8 cut(s) 23, 316, 688, 961, 1036, 1516, 1612, 1688
Bst6I CTCTTC 4 cut(s) 546, 969, 1142, 1160
BstAFI CTTAAG 1 cut(s) 1468
BstAPI GCANNNNNTGC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 1340
BstC8I GCNNGC 4 cut(s) 108, 1544, 1596, 1664
BstDEI CTNAG 7 cut(s) 132, 141, 508, 538, 1126, 1547, 1621
BstF5I GGATG 5 cut(s) 107, 371, 808, 823, 1446
BstKTI GATC 3 cut(s) 150, 567, 1278
BstMAI GTCTC 5 cut(s) 382, 511, 868, 890, 1639
BstMBI GATC 3 cut(s) 147, 564, 1275
BstMWI GCNNNNNNNGC 2 cut(s) 221, 1385
BstNSI RCATGY 1 cut(s) 1020
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 2 cut(s) 244, 1483
BstYI RGATCY 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 733
BsuI GTATCC 1 cut(s) 964
BsuRI GGCC 4 cut(s) 267, 428, 654, 1662
BsuTUI ATCGAT 1 cut(s) 733
BtsCI GGATG 5 cut(s) 107, 371, 808, 823, 1446
BtsIMutI CAGTG 6 cut(s) 28, 693, 966, 1269, 1677, 1693
Cac8I GCNNGC 4 cut(s) 108, 1544, 1596, 1664
CaiI CAGNNNCTG 1 cut(s) 1268
CciI TCATGA 1 cut(s) 1080
Cfr13I GGNCC 2 cut(s) 1032, 1763
ClaI ATCGAT 1 cut(s) 733
CseI GACGC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 1654
CviAII CATG 7 cut(s) 244, 562, 792, 994, 1017, 1081, 1717
CviQI GTAC 1 cut(s) 1654
DdeI CTNAG 7 cut(s) 132, 141, 508, 538, 1126, 1547, 1621
DpnI GATC 3 cut(s) 149, 566, 1277
DpnII GATC 3 cut(s) 147, 564, 1275
DraIII CACNNNGTG 1 cut(s) 482
DrdI GACNNNNNNGTC 1 cut(s) 882
DriI GACNNNNNGTC 1 cut(s) 1181
DseDI GACNNNNNNGTC 1 cut(s) 882
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 4 cut(s) 546, 969, 1142, 1160
Eam1105I GACNNNNNGTC 1 cut(s) 1181
EarI CTCTTC 4 cut(s) 546, 969, 1142, 1160
EciI GGCGGA 1 cut(s) 501
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 262, 1216
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 1032, 1763
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 3 cut(s) 195, 1217, 1721
Eco88I CYCGRG 1 cut(s) 747
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 1763
EcoT14I CCWWGG 2 cut(s) 262, 1216
EcoT22I ATGCAT 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 262, 1216
Esp3I CGTCTC 1 cut(s) 511
FaeI CATG 7 cut(s) 247, 565, 795, 997, 1020, 1084, 1720
FaqI GGGAC 3 cut(s) 697, 1169, 1197
FatI CATG 7 cut(s) 243, 561, 791, 993, 1016, 1080, 1716
FbaI TGATCA 1 cut(s) 1275
FblI GTMKAC 1 cut(s) 1038
FokI GGATG 5 cut(s) 114, 358, 795, 810, 1453
FriOI GRGCYC 1 cut(s) 138
FspBI CTAG 8 cut(s) 125, 479, 905, 921, 1370, 1574, 1604, 1768
GsaI CCCAGC 1 cut(s) 1383
HaeIII GGCC 4 cut(s) 267, 428, 654, 1662
HapII CCGG 3 cut(s) 1087, 1116, 1433
HgaI GACGC 1 cut(s) 312
Hin1II CATG 7 cut(s) 247, 565, 795, 997, 1020, 1084, 1720
HincII GTYRAC 3 cut(s) 360, 1014, 1321
HindII GTYRAC 3 cut(s) 360, 1014, 1321
HindIII AAGCTT 1 cut(s) 1386
HpaI GTTAAC 1 cut(s) 360
HpaII CCGG 3 cut(s) 1087, 1116, 1433
HphI GGTGA 8 cut(s) 226, 790, 991, 1051, 1135, 1150, 1195, 1522
Hpy166II GTNNAC 4 cut(s) 360, 1014, 1039, 1321
Hpy188I TCNGA 6 cut(s) 142, 523, 541, 1197, 1236, 1424
Hpy188III TCNNGA 3 cut(s) 90, 887, 1081
Hpy8I GTNNAC 4 cut(s) 360, 1014, 1039, 1321
HpyCH4III ACNGT 8 cut(s) 23, 316, 688, 961, 1036, 1516, 1612, 1688
HpyCH4IV ACGT 2 cut(s) 504, 1339
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 1385
HpyF3I CTNAG 7 cut(s) 132, 141, 508, 538, 1126, 1547, 1621
HpySE526I ACGT 2 cut(s) 504, 1339
Hsp92II CATG 7 cut(s) 247, 565, 795, 997, 1020, 1084, 1720
KflI GGGWCCC 1 cut(s) 1763
Ksp22I TGATCA 1 cut(s) 1275
KspAI GTTAAC 1 cut(s) 360
Kzo9I GATC 3 cut(s) 147, 564, 1275
LweI GCATC 2 cut(s) 280, 603
MaeI CTAG 8 cut(s) 125, 479, 905, 921, 1370, 1574, 1604, 1768
MaeII ACGT 2 cut(s) 504, 1339
MaeIII GTNAC 7 cut(s) 127, 178, 232, 708, 961, 1510, 1528
MalI GATC 3 cut(s) 149, 566, 1277
MboI GATC 3 cut(s) 147, 564, 1275
MboII GAAGA 8 cut(s) 563, 565, 938, 986, 1129, 1147, 1714, 1750
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 4 cut(s) 138, 251, 624, 1457
MlyI GAGTC 5 cut(s) 654, 870, 958, 1215, 1219
Mph1103I ATGCAT 1 cut(s) 422
MseI TTAA 3 cut(s) 206, 359, 1469
MslI CAYNNNNRTG 2 cut(s) 167, 1481
MspCI CTTAAG 1 cut(s) 1468
MspI CCGG 3 cut(s) 1087, 1116, 1433
Mva1269I GAATGC 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 221, 1385
NdeII GATC 3 cut(s) 147, 564, 1275
NlaIII CATG 7 cut(s) 247, 565, 795, 997, 1020, 1084, 1720
NlaIV GGNNCC 4 cut(s) 1120, 1431, 1764, 1765
NmeAIII GCCGAG 1 cut(s) 680
NmuCI GTSAC 4 cut(s) 178, 232, 961, 1510
NsiI ATGCAT 1 cut(s) 422
NspI RCATGY 1 cut(s) 1020
PaeR7I CTCGAG 1 cut(s) 747
PagI TCATGA 1 cut(s) 1080
PciI ACATGT 1 cut(s) 1016
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 5 cut(s) 256, 533, 735, 838, 859
PleI GAGTC 5 cut(s) 654, 870, 958, 1215, 1218
PpsI GAGTC 5 cut(s) 654, 870, 958, 1215, 1218
Ppu21I YACGTR 1 cut(s) 1340
PpuMI RGGWCCY 1 cut(s) 1763
PscI ACATGT 1 cut(s) 1016
Psp124BI GAGCTC 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 1763
PspFI CCCAGC 1 cut(s) 1379
PspN4I GGNNCC 4 cut(s) 1120, 1431, 1764, 1765
PspPI GGNCC 2 cut(s) 1032, 1763
PspPPI RGGWCCY 1 cut(s) 1763
PspXI VCTCGAGB 1 cut(s) 747
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 1 cut(s) 1655
RsaNI GTAC 1 cut(s) 1654
RseI CAYNNNNRTG 2 cut(s) 167, 1481
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 3 cut(s) 206, 359, 1469
Sau3AI GATC 3 cut(s) 147, 564, 1275
Sau96I GGNCC 2 cut(s) 1032, 1763
SchI GAGTC 5 cut(s) 654, 870, 958, 1215, 1219
SduI GDGCHC 4 cut(s) 138, 251, 624, 1457
SfaNI GCATC 2 cut(s) 280, 603
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 747
SinI GGWCC 2 cut(s) 1032, 1763
SlaI CTCGAG 1 cut(s) 747
SmiMI CAYNNNNRTG 2 cut(s) 167, 1481
SmlI CTYRAG 4 cut(s) 747, 878, 966, 1468
SmoI CTYRAG 4 cut(s) 747, 878, 966, 1468
SsiI CCGC 3 cut(s) 486, 617, 1284
SspMI CTAG 8 cut(s) 125, 479, 905, 921, 1370, 1574, 1604, 1768
SstI GAGCTC 1 cut(s) 138
StyI CCWWGG 2 cut(s) 262, 1216
TaaI ACNGT 8 cut(s) 23, 316, 688, 961, 1036, 1516, 1612, 1688
TaiI ACGT 2 cut(s) 507, 1342
TaqI TCGA 6 cut(s) 14, 67, 81, 733, 748, 888
TatI WGTACW 1 cut(s) 1653
TfiI GAWTC 5 cut(s) 256, 533, 735, 838, 859
Tru1I TTAA 3 cut(s) 206, 359, 1469
Tru9I TTAA 3 cut(s) 206, 359, 1469
TscAI CASTG 6 cut(s) 28, 693, 966, 1269, 1684, 1693
TseFI GTSAC 4 cut(s) 178, 232, 961, 1510
Tsp45I GTSAC 4 cut(s) 178, 232, 961, 1510
TspRI CASTG 6 cut(s) 28, 693, 966, 1269, 1684, 1693
Vha464I CTTAAG 1 cut(s) 1468
VpaK11BI GGWCC 2 cut(s) 1032, 1763
XapI RAATTY 3 cut(s) 172, 1412, 1615
XceI RCATGY 1 cut(s) 1020
XhoI CTCGAG 1 cut(s) 747
XmiI GTMKAC 1 cut(s) 1038
XspI CTAG 8 cut(s) 125, 479, 905, 921, 1370, 1574, 1604, 1768
Zsp2I ATGCAT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.