Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021406

Physical Location & Seq

Genomic Coordinates Reverse (-)

55617756 .. 55617986

Gene Structure 231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTACGGCTTCGAAGCTATGACCTTCAACATTCACGGCGGCTACTTGGAGGCCATCATCCGGGGACACCGTGCCGGTCTTCTCACCACCGCTGATTACAACAATCTCTACCAGTGCGAAACCCACGACGACATTAAGATGCACCTCTTTGCCACCGAGTACAGTCCCTACCTCCAAAACGGTGCGCTTTGGAACTATATCTCTCTTTCTTATCGTGGATTTGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

76

Amino Acids

8.84

Weight (kDa)

5.65

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_AC39	PF01992	16 - 63	4.7e-11	ATP synthase (C/AC39) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021406)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431361 RchiOBHm_Chr6g0297701
rosa_samantha	Rh2AG134800 Rh2AG152800 Rh2BG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	39, 90
AfaI	GTAC	2 cut(s)	5, 161
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AoxI	GGCC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	71
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	2 cut(s)	22, 52
BcnI	CCSGG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	61, 75
BslFI	GGGAC	2 cut(s)	78, 150
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	2 cut(s)	78, 150
BsnI	GGCC	1 cut(s)	53
Bsp119I	TTCGAA	1 cut(s)	12
BspACI	CCGC	2 cut(s)	39, 90
BspANI	GGCC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	61
Bst4CI	ACNGT	3 cut(s)	71, 164, 182
BstBI	TTCGAA	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	4, 160
CviJI	RGCY	4 cut(s)	9, 17, 42, 53
CviKI_1	RGCY	4 cut(s)	9, 17, 42, 53
CviQI	GTAC	2 cut(s)	4, 160
FaiI	YATR	2 cut(s)	20, 198
FaqI	GGGAC	2 cut(s)	78, 150
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	40
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	61, 75
HhaI	GCGC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	61, 75
HphI	GGTGA	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	3 cut(s)	71, 164, 182
HpyCH4V	TGCA	1 cut(s)	142
HspAI	GCGC	1 cut(s)	185
LpnPI	CCDG	3 cut(s)	74, 88, 125
LweI	GCATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	71
MnlI	CCTC	3 cut(s)	43, 155, 182
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	2 cut(s)	61, 75
MspR9I	CCNGG	1 cut(s)	62
NciI	CCSGG	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	5, 161
RsaNI	GTAC	2 cut(s)	4, 160
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	4 cut(s)	19, 26, 147, 174
SfaNI	GCATC	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	137
SsiI	CCGC	2 cut(s)	39, 90
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	71, 164, 182
TaqI	TCGA	1 cut(s)	12
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	119
TspRI	CASTG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.