Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0021406

Physical Location & Seq

Genomic Coordinates Forward (+)

13980315 .. 13990060

Gene Structure 9746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG152800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTACGGCTTCGAAGCTATGACCTTCAACATTCATGACAGCTACTTGGAGGCCATCATCTGGGGACACCGTGCCGGTCCTCTCACCGCCGCTGATTACAACAATCTCTGCCAGTGCGAGACCCTCGACGACATTAAGATGCACCTCTCTGCCACCGAGTACAGCCCCTACCTCCAAAACGGCTTGAAGAGGATTGAGCTCTCTGCATTTGGAACCAAAATGGGCGATACCAGCTCCTTTGGCAGAGACCTCCGGATACAGATCAATCTTAATAGGGGAGCCAAAGAGGGCTTCAATCACAACTTGATGCTTAATTCAGACACCTTGGGCTGTTTAACTTCTCCCATCTTCAACCTCCAATTCTTTGGCCCCCATCGCCCATGGGATTTCCCTCTTATAATTTGGTCTGGGTTAAGTTTAAGGAGTGTTGAGGGCCAAAATGAAGCTGGGATTATGAGTGAAGCCCTGCAGAACCTGATATGTGAAGTGTTATTTCTTGGAACAGGCTGGCTAGTTTGTAAGTTAGCATCCACTCCATACGTGACCTTAGATTGCTTAAGTTTGAACTCAAAAATACGTTGTGATTTGGTTTTATTACCAGAATCTAGGACCTTTAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

207

Amino Acids

23.28

Weight (kDa)

5.71

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_AC39	PF01992	16 - 62	6.1e-10	ATP synthase (C/AC39) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021406)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431361 RchiOBHm_Chr6g0297701
rosa_samantha	Rh2AG134800 Rh2AG152800 Rh2BG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AccB7I	CCANNNNNTGG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	252
AciI	CCGC	2 cut(s)	87, 90
AfaI	GTAC	2 cut(s)	5, 161
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflII	CTTAAG	1 cut(s)	556
AgsI	TTSAA	5 cut(s)	28, 187, 295, 352, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	5 cut(s)	17, 42, 199, 234, 446
AluI	AGCT	5 cut(s)	17, 42, 199, 234, 446
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	2 cut(s)	113, 240
AlwNI	CAGNNNCTG	1 cut(s)	475
Aor13HI	TCCGGA	1 cut(s)	252
AoxI	GGCC	3 cut(s)	51, 367, 433
AspS9I	GGNCC	4 cut(s)	77, 368, 433, 609
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	77, 609
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	3 cut(s)	62, 353, 381
BceAI	ACGGC	2 cut(s)	22, 196
BciVI	GTATCC	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	113, 240
BfaI	CTAG	2 cut(s)	512, 606
BfmI	CTRYAG	1 cut(s)	467
BfrI	CTTAAG	1 cut(s)	556
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme18I	GGWCC	2 cut(s)	77, 609
BmgT120I	GGNCC	4 cut(s)	77, 368, 433, 609
BmiI	GGNNCC	3 cut(s)	214, 280, 370
BmsI	GCATC	3 cut(s)	129, 297, 536
Bpu14I	TTCGAA	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	541
BsaBI	GATNNNNATC	1 cut(s)	260
BsaI	GGTCTC	2 cut(s)	113, 240
BsaJI	CCNNGG	2 cut(s)	324, 380
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	260
BseAI	TCCGGA	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	324, 380
BseGI	GGATG	1 cut(s)	527
BseJI	GATNNNNATC	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	446
BshFI	GGCC	3 cut(s)	53, 369, 435
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	75, 253
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	2 cut(s)	113, 240
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	53, 369, 435
Bso31I	GGTCTC	2 cut(s)	113, 240
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	2 cut(s)	87, 90
BspANI	GGCC	3 cut(s)	53, 369, 435
BspEI	TCCGGA	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	214, 280, 370
BspMAI	CTGCAG	1 cut(s)	471
BspT104I	TTCGAA	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	556
BspTNI	GGTCTC	2 cut(s)	113, 240
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	324, 380
BssMI	GATC	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	324, 380
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	182
BstAFI	CTTAAG	1 cut(s)	556
BstBAI	YACGTR	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	547
BstDSI	CCRYGG	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	527
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	113, 240
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 240, 375
BstSFI	CTRYAG	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	365
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	53, 369, 435
BtgI	CCRYGG	1 cut(s)	380
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	475
CciI	TCATGA	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	4 cut(s)	77, 368, 433, 609
Csp6I	GTAC	2 cut(s)	4, 160
CviAII	CATG	2 cut(s)	35, 381
CviQI	GTAC	2 cut(s)	4, 160
DdeI	CTNAG	1 cut(s)	547
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	324, 380
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	2 cut(s)	113, 240
Eco47I	GGWCC	2 cut(s)	77, 609
Eco53kI	GAGCTC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	609
EcoT14I	CCWWGG	2 cut(s)	324, 380
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	2 cut(s)	324, 380
FaeI	CATG	2 cut(s)	38, 384
FaiI	YATR	7 cut(s)	20, 36, 382, 398, 455, 481, 538
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	2 cut(s)	34, 380
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	514
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	512, 606
GluI	GCNGC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	450
HaeIII	GGCC	3 cut(s)	53, 369, 435
HapII	CCGG	2 cut(s)	75, 253
Hin1II	CATG	2 cut(s)	38, 384
HinfI	GANTC	1 cut(s)	602
HpaII	CCGG	2 cut(s)	75, 253
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	2 cut(s)	35, 253
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	2 cut(s)	540, 577
HpyCH4V	TGCA	3 cut(s)	142, 206, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 240, 375
HpyF3I	CTNAG	1 cut(s)	547
HpySE526I	ACGT	2 cut(s)	540, 577
Hsp92II	CATG	2 cut(s)	38, 384
Kpn2I	TCCGGA	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	239, 278
LweI	GCATC	3 cut(s)	129, 297, 536
MaeI	CTAG	2 cut(s)	512, 606
MaeII	ACGT	2 cut(s)	540, 577
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	199, 340
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	313, 359, 399
MroI	TCCGGA	1 cut(s)	252
MseI	TTAA	7 cut(s)	135, 270, 312, 335, 413, 419, 557
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	92
MspCI	CTTAAG	1 cut(s)	556
MspI	CCGG	2 cut(s)	75, 253
MwoI	GCNNNNNNNGC	3 cut(s)	231, 240, 375
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	2 cut(s)	38, 384
NlaIV	GGNNCC	3 cut(s)	214, 280, 370
NmuCI	GTSAC	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	12
PagI	TCATGA	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	446
PspN4I	GGNNCC	3 cut(s)	214, 280, 370
PspPI	GGNCC	4 cut(s)	77, 368, 433, 609
PspPPI	RGGWCCY	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	471
PstNI	CAGNNNCTG	1 cut(s)	475
RsaI	GTAC	2 cut(s)	5, 161
RsaNI	GTAC	2 cut(s)	4, 160
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	7 cut(s)	135, 270, 312, 335, 413, 419, 557
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	4 cut(s)	77, 368, 433, 609
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	3 cut(s)	129, 297, 536
SfcI	CTRYAG	1 cut(s)	467
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	2 cut(s)	77, 609
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	3 cut(s)	313, 359, 399
SsiI	CCGC	2 cut(s)	87, 90
SspMI	CTAG	2 cut(s)	512, 606
SstI	GAGCTC	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	324, 380
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	2 cut(s)	543, 580
TaqI	TCGA	2 cut(s)	12, 126
TasI	AATT	3 cut(s)	313, 359, 399
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	7 cut(s)	135, 270, 312, 335, 413, 419, 557
Tru9I	TTAA	7 cut(s)	135, 270, 312, 335, 413, 419, 557
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	541
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	23, 456
TspRI	CASTG	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	60
Vha464I	CTTAAG	1 cut(s)	556
VpaK11BI	GGWCC	2 cut(s)	77, 609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XspI	CTAG	2 cut(s)	512, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.