Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021406

Physical Location & Seq

Genomic Coordinates Forward (+)

59358637 .. 59363500

Gene Structure 4864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTACGGCTTCAAAGCTATGACCTTCAACATTCACAACGGCTACTTGGAGGCCATCATCCGGAGACACCGTGCCGGTTTTCTCACTGCTGCTAATTACAACAATCTCTGCCAGTGCGAGACCCTCGACGACATTAAGATTGACCTCTCTGCCACCGAGTACAGCCCCTACCTCCAAAACGCTTTGATTGCTTTAATTTGGGTCCGAGATTGTATTAAAGAAGCTTCAGTCTTTGCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

80

Amino Acids

9.16

Weight (kDa)

5.57

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_AC39	PF01992	16 - 62	7e-11	ATP synthase (C/AC39) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0021406)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431361 RchiOBHm_Chr6g0297701
rosa_samantha	Rh2AG134800 Rh2AG152800 Rh2BG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	5, 161
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	13, 28
AluBI	AGCT	2 cut(s)	17, 224
AluI	AGCT	2 cut(s)	17, 224
Alw26I	GTCTC	2 cut(s)	58, 113
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	2 cut(s)	22, 55
BcoDI	GTCTC	2 cut(s)	58, 113
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	60
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	61, 75
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	2 cut(s)	58, 113
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	113
Bsp13I	TCCGGA	1 cut(s)	60
BspANI	GGCC	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	58, 113
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 119
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	4, 160
CviJI	RGCY	6 cut(s)	9, 17, 42, 53, 165, 224
CviKI_1	RGCY	6 cut(s)	9, 17, 42, 53, 165, 224
CviQI	GTAC	2 cut(s)	4, 160
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	210
FaiI	YATR	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	61, 75
HindIII	AAGCTT	1 cut(s)	222
HpaII	CCGG	2 cut(s)	61, 75
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Kpn2I	TCCGGA	1 cut(s)	60
LpnPI	CCDG	3 cut(s)	74, 88, 125
Lsp1109I	GCAGC	1 cut(s)	76
MluCI	AATT	2 cut(s)	94, 195
MnlI	CCTC	4 cut(s)	43, 134, 155, 182
MroI	TCCGGA	1 cut(s)	60
MseI	TTAA	3 cut(s)	135, 194, 216
MspI	CCGG	2 cut(s)	61, 75
MwoI	GCNNNNNNNGC	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	202
RsaI	GTAC	2 cut(s)	5, 161
RsaNI	GTAC	2 cut(s)	4, 160
SaqAI	TTAA	3 cut(s)	135, 194, 216
SatI	GCNGC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	202
SetI	ASST	5 cut(s)	19, 26, 147, 174, 226
SgeI	CNNG	9 cut(s)	58, 73, 83, 87, 124, 130, 137, 169, 218
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	2 cut(s)	94, 195
TaaI	ACNGT	1 cut(s)	71
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	94, 195
TatI	WGTACW	1 cut(s)	159
Tru1I	TTAA	3 cut(s)	135, 194, 216
Tru9I	TTAA	3 cut(s)	135, 194, 216
TscAI	CASTG	2 cut(s)	91, 119
TseI	GCWGC	1 cut(s)	89
TspRI	CASTG	2 cut(s)	91, 119
VpaK11BI	GGWCC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.