Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021406

Physical Location & Seq

Genomic Coordinates Forward (+)

13580343 .. 13582286

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGTACGGCTTCGAAGCTATGACCTTCAACATTCATGACAGCTACTTGGAGGCCATCATCTGGGGACACCGTGCCGGTCCTCTCACCGCCGCTGATTACAACAATCTCTGCCAGTGCGAGACCCTCGACGACATTAAGATGCACCTCTCTGCCACCGAGTACAGCCCCTACCTCCAAAACGGCTTGAAGAGGATTGAGCTCTCTGCATTTGGAACCAAAATGGGCGATACCAGCTCCTTTGGTATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

83

Amino Acids

9.31

Weight (kDa)

5.1

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_AC39	PF01992	16 - 62	7.8e-11	ATP synthase (C/AC39) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0021406)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431361 RchiOBHm_Chr6g0297701
rosa_samantha	Rh2AG134800 Rh2AG152800 Rh2BG158400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	60
AciI	CCGC	2 cut(s)	87, 90
AfaI	GTAC	2 cut(s)	5, 161
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	28, 187
AluBI	AGCT	4 cut(s)	17, 42, 199, 234
AluI	AGCT	4 cut(s)	17, 42, 199, 234
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	2 cut(s)	22, 196
BcoDI	GTCTC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	87, 90
BspANI	GGCC	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	214
BspT104I	TTCGAA	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	4, 160
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	8 cut(s)	9, 17, 42, 53, 165, 183, 199, 234
CviKI_1	RGCY	8 cut(s)	9, 17, 42, 53, 165, 183, 199, 234
CviQI	GTAC	2 cut(s)	4, 160
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	1 cut(s)	38
FaiI	YATR	2 cut(s)	20, 36
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	38
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	142, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	4 cut(s)	46, 88, 125, 244
LweI	GCATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	201
MnlI	CCTC	6 cut(s)	43, 90, 134, 155, 182, 183
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	12
PagI	TCATGA	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	77
RsaI	GTAC	2 cut(s)	5, 161
RsaNI	GTAC	2 cut(s)	4, 160
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	7 cut(s)	19, 26, 44, 147, 174, 201, 236
SfaNI	GCATC	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	137
SsiI	CCGC	2 cut(s)	87, 90
SstI	GAGCTC	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	12, 126
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.