Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012413

Physical Location & Seq

Genomic Coordinates Reverse (-)

58189481 .. 58192610

Gene Structure 3130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40285

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAACAGAGGACCAACTGCCTTTATTGGGAATCCTGGTCTCTGTGGCCCTCCATTGAAGAATCCTTGTTCTTCAGAAACTCCTGGTGCAAGTGCACCATCCTTTCCATATCTGCCGGATAACTTGCCTCCTCATGATTCTGATGATAATGCTGGTGAGAGATCGAAAGGGTTAAGTAAGGAAGCTGTGATTGCAATTGTAGTGAGTGACGTGATTGGTATTTGCCTTGTTGGGCTGCTTTTCTCATATTGCTATTCGAGGATTTGTTCTTGTAGTAAGGTTAAGGATGAAAATGGTTATGGGTTTGCGAAGGGCGGCAAGGGGAGGAAGGAGTGCTTGTGCTTCAGGAAAGATGAATCGGAGACTTTATCTGAAAATATGGAGCAGTATGATCTGGTGGCATTGGACACACAAGTGGCATTTGATCTGGATGAGCTTCTTAAGGCTTCTGCTTTTGTTCTTGGGAAGAGTGGAATTGGGATTGTTTACAAAGTTGTGCTTGAAGAAGGACTTACCTTAGCAGTTAGGAGATTGGGTGAAGGGGGCTCTCAGAGATTCAAGGAATTTCAGACAGAAGTTGAAGCAATTGGAAAGCTAAGGCATCCTAATATCGTTACACTAAGGGCTTATTATTGGTCTGTTGATGAGAAGCTGCTGATATATGACTATGTGCCTAATGGCAACCTCGCCGCCGCCATTCATGGAAAGCCAGGAATACTATCATTTACGCCACTCTCATGGTCTGTTCGGTTGCAAATCATGAAAGGAATTGCGAAAGGCTTGGTCTACCTGCATGAGTTTAGCCCCAAAAAGTATGTCCATGGAGACTTGAATCCGAGTAACGTACTTCTTGGACATAACATGGAGCCACACATTTCTGATTTTGGACTCGGACGCCTTGCTAATATAGCCGGAGGTACCCCAACACTGGAATCCAACCGAATGGCCACCATAGACAAACCACAAGAAAGGCACCAAAAGAGTGCATCCATTGAATCTGCTATAGTTTGTTCATCTAGTAATTTGGGATCTTGTTATCAAGCTCCAGAAGCTCTGAAGGTGGTGAAACCATCACAGAAATGGGATGTCTATTCCTACGGGGTAATCTTACTCGAAATGATTACCGGAAGATTGCCCATAGTCCAAGTGGGTTCCTCAGAAATGGACCTTGTTCGTTGGATTCAGCTCTGCATTGACGACAAGAAGCCTCTTTTAGACGTATTAGACCCACATCTAATGCAAGATGTAGAAATGGAAGAAGAGATTATCGCAGTGTTGAAGATTGCAATGGCTTGCGTTCATAGCAGCCCAGAAAGAAGACCAATCATGAGGCATATTTCTGAAGCTTTAGACAGGTTGGCCACACCTGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008356 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0036211 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0071944 GO:0090406 GO:0120025 GO:0140096 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

458

Amino Acids

50.17

Weight (kDa)

5.93

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	154 - 301	5.7e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	154 - 446	1.5e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	339 - 450	3.1e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01210
fragaria_vesca	FvH4_4g26710
malus_domestica	MD13G1035300.v1.1 MD16G1037100.v1.1
prunus_persica	Prupe.1G316900_v2.0.a1 Prupe.1G316900_v2.0.a1 Prupe.1G316900_v2.0.a1
pyrus_communis	pycom13g03090 pycom16g03210
rosa_chinensis	RchiOBHm_Chr4g0434401
rosa_laevigata	RLG00000006674
rosa_multiflora	Rmu_co8521181.1_g000003
rosa_roxburghii	Rroxscaffold_5G00375760
rosa_rugosa	Rorug04G0276300
rosa_samantha	Rh4AG331900 Rh4BG339700 Rh4CG354900 Rh4DG334900
rosa_wichuraiana	Rw4G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	798
Acc65I	GGTACC	1 cut(s)	917
AccB1I	GGYRCC	2 cut(s)	917, 972
AccI	GTMKAC	1 cut(s)	786
AciI	CCGC	3 cut(s)	315, 690, 693
AclWI	GGATC	1 cut(s)	1036
AcoI	YGGCCR	2 cut(s)	945, 1359
AcsI	RAATTY	1 cut(s)	563
AcuI	CTGAAG	4 cut(s)	57, 328, 1076, 1362
AcyI	GRCGYC	1 cut(s)	895
AfaI	GTAC	2 cut(s)	846, 919
AfiI	CCNNNNNNNGG	2 cut(s)	27, 928
AflII	CTTAAG	1 cut(s)	440
AgsI	TTSAA	7 cut(s)	58, 503, 559, 581, 832, 995, 1279
AjiI	CACGTC	1 cut(s)	211
AjnI	CCWGG	3 cut(s)	34, 82, 709
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	8 cut(s)	185, 436, 595, 652, 1043, 1052, 1186, 1346
AluI	AGCT	8 cut(s)	185, 436, 595, 652, 1043, 1052, 1186, 1346
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	3 cut(s)	44, 356, 819
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	1036
AoxI	GGCC	3 cut(s)	46, 945, 1359
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	235, 652, 1305
ApoI	RAATTY	1 cut(s)	563
ArsI	GACNNNNNNTTYG	2 cut(s)	801, 833
Asp718I	GGTACC	1 cut(s)	917
AspS9I	GGNCC	3 cut(s)	11, 47, 1165
AsuHPI	GGTGA	3 cut(s)	167, 548, 1075
AvaII	GGWCC	2 cut(s)	11, 1165
BaeGI	GKGCMC	1 cut(s)	97
BalI	TGGCCA	2 cut(s)	947, 1361
BanI	GGYRCC	2 cut(s)	917, 972
BanII	GRGCYC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	1324
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	222, 639, 1317
BccI	CCATC	2 cut(s)	106, 1078
BciT130I	CCWGG	3 cut(s)	36, 84, 711
BcoDI	GTCTC	3 cut(s)	44, 356, 819
BfaI	CTAG	1 cut(s)	1017
BfmI	CTRYAG	1 cut(s)	1002
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	798
BisI	GCNGC	6 cut(s)	236, 316, 653, 690, 693, 1306
BlsI	GCNGC	6 cut(s)	237, 317, 654, 691, 694, 1307
Bme1390I	CCNGG	3 cut(s)	36, 84, 711
Bme18I	GGWCC	2 cut(s)	11, 1165
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	3 cut(s)	11, 47, 1165
BmiI	GGNNCC	4 cut(s)	867, 919, 974, 1153
BmrFI	CCNGG	3 cut(s)	36, 84, 711
BmsI	GCATC	2 cut(s)	610, 995
BpiI	GAAGAC	1 cut(s)	1324
BpmI	CTGGAG	1 cut(s)	1029
Bpu10I	CCTNAGC	2 cut(s)	517, 596
BsaHI	GRCGYC	1 cut(s)	895
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	820
BsaWI	WCCGGW	1 cut(s)	1124
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 520, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 928
Bse1I	ACTGG	1 cut(s)	933
Bse3DI	GCAATG	1 cut(s)	1293
BseBI	CCWGG	3 cut(s)	36, 84, 711
BseDI	CCNNGG	1 cut(s)	820
BseGI	GGATG	6 cut(s)	98, 292, 436, 601, 986, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	27, 928
BseMI	GCAATG	1 cut(s)	1293
BseMII	CTCAG	2 cut(s)	563, 1170
BseNI	ACTGG	1 cut(s)	933
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	222, 639, 1317
BshFI	GGCC	3 cut(s)	48, 947, 1361
BshNI	GGYRCC	2 cut(s)	917, 972
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	116, 912, 1125
BslI	CCNNNNNNNGG	2 cut(s)	27, 928
BsmAI	GTCTC	3 cut(s)	44, 356, 819
BsnI	GGCC	3 cut(s)	48, 947, 1361
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	97, 548
Bsp143I	GATC	4 cut(s)	161, 391, 424, 1028
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	3 cut(s)	315, 690, 693
BspANI	GGCC	3 cut(s)	48, 947, 1361
BspCNI	CTCAG	2 cut(s)	562, 1169
BspHI	TCATGA	3 cut(s)	133, 759, 1326
BspLI	GGNNCC	4 cut(s)	867, 919, 974, 1153
BspMI	ACCTGC	1 cut(s)	798
BspPI	GGATC	1 cut(s)	1036
BspT107I	GGYRCC	2 cut(s)	917, 972
BspTI	CTTAAG	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	1293
BsrI	ACTGG	1 cut(s)	933
BssECI	CCNNGG	1 cut(s)	820
BssMI	GATC	4 cut(s)	161, 391, 424, 1028
BssNI	GRCGYC	1 cut(s)	895
BssT1I	CCWWGG	1 cut(s)	820
Bst2UI	CCWGG	3 cut(s)	36, 84, 711
Bst6I	CTCTTC	2 cut(s)	461, 1254
BstACI	GRCGYC	1 cut(s)	895
BstAFI	CTTAAG	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	1294
BstDEI	CTNAG	5 cut(s)	517, 549, 596, 620, 1156
BstDSI	CCRYGG	1 cut(s)	820
BstF5I	GGATG	6 cut(s)	98, 292, 436, 601, 986, 1090
BstKTI	GATC	4 cut(s)	164, 394, 427, 1031
BstMAI	GTCTC	3 cut(s)	44, 356, 819
BstMBI	GATC	4 cut(s)	161, 391, 424, 1028
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 908, 1049, 1302, 1367
BstNI	CCWGG	3 cut(s)	36, 84, 711
BstSCI	CCNGG	3 cut(s)	34, 82, 709
BstSFI	CTRYAG	1 cut(s)	1002
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	222, 639, 1317
BstV2I	GAAGAC	1 cut(s)	1324
BstX2I	RGATCY	1 cut(s)	1028
BstXI	CCANNNNNNTGG	2 cut(s)	738, 943
BstYI	RGATCY	1 cut(s)	1028
BsuRI	GGCC	3 cut(s)	48, 947, 1361
BtgI	CCRYGG	1 cut(s)	820
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	6 cut(s)	98, 292, 436, 601, 986, 1090
BtsI	GCAGTG	1 cut(s)	1278
BtsIMutI	CAGTG	2 cut(s)	926, 1278
BveI	ACCTGC	1 cut(s)	798
Cac8I	GCNNGC	1 cut(s)	1294
CciI	TCATGA	3 cut(s)	133, 759, 1326
Cfr13I	GGNCC	3 cut(s)	11, 47, 1165
CseI	GACGC	1 cut(s)	903
Csp6I	GTAC	2 cut(s)	845, 918
CviAII	CATG	8 cut(s)	134, 701, 738, 760, 794, 821, 862, 1327
CviQI	GTAC	2 cut(s)	845, 918
DdeI	CTNAG	5 cut(s)	517, 549, 596, 620, 1156
DpnI	GATC	4 cut(s)	163, 393, 426, 1030
DpnII	GATC	4 cut(s)	161, 391, 424, 1028
EaeI	YGGCCR	2 cut(s)	945, 1359
Eam1104I	CTCTTC	2 cut(s)	461, 1254
EarI	CTCTTC	2 cut(s)	461, 1254
Eco130I	CCWWGG	1 cut(s)	820
Eco24I	GRGCYC	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	11, 1165
Eco57I	CTGAAG	4 cut(s)	57, 328, 1076, 1362
EcoRII	CCWGG	3 cut(s)	34, 82, 709
EcoT14I	CCWWGG	1 cut(s)	820
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	8 cut(s)	137, 704, 741, 763, 797, 824, 865, 1330
FalI	AAGNNNNNCTT	6 cut(s)	320, 352, 483, 515, 495, 527
FatI	CATG	8 cut(s)	133, 700, 737, 759, 793, 820, 861, 1326
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	6 cut(s)	236, 316, 653, 690, 693, 1306
FokI	GGATG	6 cut(s)	85, 299, 443, 588, 973, 1097
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	6 cut(s)	236, 316, 653, 690, 693, 1306
FspBI	CTAG	1 cut(s)	1017
GluI	GCNGC	6 cut(s)	236, 316, 653, 690, 693, 1306
GsuI	CTGGAG	1 cut(s)	1029
HaeIII	GGCC	3 cut(s)	48, 947, 1361
HapII	CCGG	3 cut(s)	116, 912, 1125
HgaI	GACGC	1 cut(s)	903
Hin1I	GRCGYC	1 cut(s)	895
Hin1II	CATG	8 cut(s)	137, 704, 741, 763, 797, 824, 865, 1330
HindIII	AAGCTT	1 cut(s)	1344
HpaII	CCGG	3 cut(s)	116, 912, 1125
HphI	GGTGA	3 cut(s)	167, 548, 1075
Hpy166II	GTNNAC	3 cut(s)	95, 487, 787
Hpy188III	TCNNGA	6 cut(s)	134, 346, 428, 760, 1046, 1327
Hpy8I	GTNNAC	3 cut(s)	95, 487, 787
HpyAV	CCTTC	5 cut(s)	304, 322, 500, 533, 1051
HpyCH4IV	ACGT	3 cut(s)	210, 843, 1218
HpyCH4V	TGCA	9 cut(s)	89, 95, 194, 754, 793, 986, 1191, 1240, 1286
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 908, 1049, 1302, 1367
HpyF3I	CTNAG	5 cut(s)	517, 549, 596, 620, 1156
HpySE526I	ACGT	3 cut(s)	210, 843, 1218
Hsp92I	GRCGYC	1 cut(s)	895
Hsp92II	CATG	8 cut(s)	137, 704, 741, 763, 797, 824, 865, 1330
KpnI	GGTACC	1 cut(s)	921
Kzo9I	GATC	4 cut(s)	161, 391, 424, 1028
LmnI	GCTCC	3 cut(s)	382, 865, 1048
Lsp1109I	GCAGC	3 cut(s)	222, 639, 1317
LweI	GCATC	2 cut(s)	610, 995
MaeI	CTAG	1 cut(s)	1017
MaeII	ACGT	3 cut(s)	210, 843, 1218
MaeIII	GTNAC	3 cut(s)	206, 613, 839
MalI	GATC	4 cut(s)	163, 393, 426, 1030
MboI	GATC	4 cut(s)	161, 391, 424, 1028
MboII	GAAGA	9 cut(s)	63, 70, 478, 515, 1140, 1268, 1271, 1291, 1329
MfeI	CAATTG	2 cut(s)	195, 585
MflI	RGATCY	1 cut(s)	1028
MhlI	GDGCHC	2 cut(s)	97, 548
MlsI	TGGCCA	2 cut(s)	947, 1361
MluCI	AATT	6 cut(s)	195, 474, 563, 585, 768, 1021
MluNI	TGGCCA	2 cut(s)	947, 1361
MlyI	GAGTC	1 cut(s)	882
MmeI	TCCRAC	2 cut(s)	960, 1157
Mox20I	TGGCCA	2 cut(s)	947, 1361
MscI	TGGCCA	2 cut(s)	947, 1361
MseI	TTAA	3 cut(s)	173, 282, 441
MslI	CAYNNNNRTG	3 cut(s)	413, 736, 1078
Msp20I	TGGCCA	2 cut(s)	947, 1361
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	3 cut(s)	116, 912, 1125
MspR9I	CCNGG	3 cut(s)	36, 84, 711
MunI	CAATTG	2 cut(s)	195, 585
MvaI	CCWGG	3 cut(s)	36, 84, 711
MwoI	GCNNNNNNNGC	5 cut(s)	191, 908, 1049, 1302, 1367
NcoI	CCATGG	1 cut(s)	820
NdeII	GATC	4 cut(s)	161, 391, 424, 1028
NlaIII	CATG	8 cut(s)	137, 704, 741, 763, 797, 824, 865, 1330
NlaIV	GGNNCC	4 cut(s)	867, 919, 974, 1153
NmuCI	GTSAC	1 cut(s)	206
OliI	CACNNNNGTG	1 cut(s)	413
PagI	TCATGA	3 cut(s)	133, 759, 1326
PfeI	GAWTC	9 cut(s)	31, 61, 137, 356, 555, 832, 932, 995, 1180
PkrI	GCNGC	6 cut(s)	237, 317, 654, 691, 694, 1307
PleI	GAGTC	1 cut(s)	882
PpsI	GAGTC	1 cut(s)	882
Psp6I	CCWGG	3 cut(s)	34, 82, 709
PspGI	CCWGG	3 cut(s)	34, 82, 709
PspN4I	GGNNCC	4 cut(s)	867, 919, 974, 1153
PspPI	GGNCC	3 cut(s)	11, 47, 1165
PsuI	RGATCY	1 cut(s)	1028
RsaI	GTAC	2 cut(s)	846, 919
RsaNI	GTAC	2 cut(s)	845, 918
RseI	CAYNNNNRTG	3 cut(s)	413, 736, 1078
SaqAI	TTAA	3 cut(s)	173, 282, 441
SatI	GCNGC	6 cut(s)	236, 316, 653, 690, 693, 1306
Sau3AI	GATC	4 cut(s)	161, 391, 424, 1028
Sau96I	GGNCC	3 cut(s)	11, 47, 1165
SchI	GAGTC	1 cut(s)	882
ScrFI	CCNGG	3 cut(s)	36, 84, 711
SduI	GDGCHC	2 cut(s)	97, 548
SfaNI	GCATC	2 cut(s)	610, 995
SfcI	CTRYAG	1 cut(s)	1002
SinI	GGWCC	2 cut(s)	11, 1165
SmiMI	CAYNNNNRTG	3 cut(s)	413, 736, 1078
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	6 cut(s)	195, 474, 563, 585, 768, 1021
SsiI	CCGC	3 cut(s)	315, 690, 693
SspMI	CTAG	1 cut(s)	1017
StyD4I	CCNGG	3 cut(s)	34, 82, 709
StyI	CCWWGG	1 cut(s)	820
TaiI	ACGT	3 cut(s)	213, 846, 1221
TaqI	TCGA	3 cut(s)	164, 257, 1113
TasI	AATT	6 cut(s)	195, 474, 563, 585, 768, 1021
TauI	GCSGC	3 cut(s)	318, 692, 695
TfiI	GAWTC	9 cut(s)	31, 61, 137, 356, 555, 832, 932, 995, 1180
Tru1I	TTAA	3 cut(s)	173, 282, 441
Tru9I	TTAA	3 cut(s)	173, 282, 441
TscAI	CASTG	2 cut(s)	933, 1278
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	235, 652, 1305
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	7 cut(s)	17, 303, 369, 689, 776, 1002, 1289
TspRI	CASTG	2 cut(s)	933, 1278
Vha464I	CTTAAG	1 cut(s)	440
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	11, 1165
XapI	RAATTY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1077, 1144
XmiI	GTMKAC	1 cut(s)	786
XspI	CTAG	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.