Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Reverse (-)

44855014 .. 44859298

Gene Structure 4285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGTCGGAAGGAACAAGTGCGGGGATGGACGATTTATCTCAAGATGATACTGGCACAATAGAGGAAATGGCCGAGGACTCGATTCTGTCGCGACAGACTTCTGTGAATCTTGTTCCCTTTGTTGGCCAGAGATTTGTTTCCCAAGATGCTGCTTATGAATTTTATTGTGGTTTTGCAAAACAATGTGGTTTTTCGATCAGACGTCACCGTACTAGAGGCAAGGATGGTGTTGGCCGGGGAGTGACAAGAAGAGATTTCACTTGTCATCGTGGTGGATACCCACAGATGAAGCCAGCTGAAGATGGAAAGATGCAAAGAAATCGCAAGTCGTCACGCTGTGGTTGTCGAGCATATATGCGCATTGTCAAGCGGGCAGACTTTGATGTCCCTGAATGGCGTATTACAGGCTTTAGCAACGTCCATAACCACGAACTTTTGAAATCCAATGAAGTGAGTCTCCTTCATGCCTACTGTTCCATATCTCCAGATGACAAGAGTCGGATTTGCATGTATGCAAAAGCTGGGATGTCAGTGCGACAAATGTTAAGATTGTTGGAGCTGGAGAAAGGTGTTAAACTAGGTTGTTTAACATTTACAGAGATAGACGTGAGAAACCTACTGCAGTCTTTTAGAAATGTTAATAGAGATAATGATGCCATTGATCTTATAGCAATGTGCAAAAAGATGAAAGATGAAAACCCTCATTTCAAGTATGACTTCAAAATAGATGGTCATAATAGGCTGGAGCATATTGCTTGGTCTTATGGTTCATCTATTCAATTATATGAGGAATTTGGAGACGCAGTGGTTTTTGACACAACTTATCGTCTGGATGCTTATGATATGCTGCTAGGCATTTGGCTTGGAGTGGATAACCATGGAATGACTTGTTTCTTCGGGTGCGTGCTTCTGCGGGATGAAAATATGCAGTCATTTTTCTGGGCATTGAAGACATTTTGGGGGTTCATGAAAGGAAAGACTCCACAGACAATATTAACTGACCATAACATGTGGCTGAAAGAAGCTATTGCTGTCGTCATGCCTCAAACAAGACACGCCTTTTGCATATGGTACATTGTTGAAAAGTTCTCGGAGTGGTTTTCTCCACTTCTTGGGTCTCAATATGATGATTGGAAAGCCGACTTTGATCAACTCTACAATCTGCAGTCAGTAGAGGATTTTGAGGAAAGATGGACGGAAATGGTTGATAGATATGGACTGCATGCAAATAAGCATGTAATCAGCTTATATGCGCTGCGGTCGTTTTGGGCTTTAGCATATATGAGGCCTTATTTTTTTGCTGGAATGACAAGTACATGTCACTCAGATTCAATTAATGCTTTCATCCAACGTTTTTTGAGTGCAGTGTCTCAACTAGATCGTTTTGTAGAGCAAGCAGCTGATATTGTTAATTATAGTGATCGGGCTGGGGCAAAGCAAAAGTTGCAACAGAAGCTGCAGAGAGTATGCCTTAAAACAGGTTCACCAATTGAATCGCATGCTGCCTCTGTTCTTACTCCTCATGCATTTGGAAAACTTCAAGAGGAACTTGTATTGGCTCCACAATATGCATCTCTTCCAGTAGATGAAAGTTGTTTCCAGGTCCAGCACCATACTCAGGCAGATGGAGGCTGCAAAGTGATTTGGGTTCCAAGTCAGGAGCACATCAGCTGTAGCTGTTGTGAGTTCGAGTTCACAGGCATCCTCTGCAGGCACGTTCTTCGTGTCTTGTCAAATAATAATTGTTTTCGTATTCCAGACCAATATCTACCCATCCGCTGGTGTGGTGTCAGTTCATCTTCCACTAACACCTTTCAGACTGCTAAAGACAAGTCTGAGAAGATTCAACTATTGGAGTCCATGGCTTCAACACTTGTTGCTGAATCAGTTGAAACAGAGGAGCGCCTTGATGTTGCATATGAGCAAATTGCAGTGGTATTATCACGTGTAAAAGACCTTCCTAGTACAACACGTAAGGCAAATGTAGGAGCCTCTAATTGTCCACCTGATTTAATGACTCTACCGGAGGTGGAAGTTGACAATGGAGATGTTCGTTTTACAATTGGAAACTCTCATGAATCTGTTTCTTCAGGAAAGCTTAAAGAGAGAAGACCAAAAGAAACTGTTGAAAGTAATAGAAAGCGAACGCGGCATTGTGCTGGCCCCTGCTGTCTGAGTGTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

728

Amino Acids

83.02

Weight (kDa)

6.53

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	53 - 146	2e-17	FAR1 DNA-binding domain
HTH_FAR1	PF26175	159 - 214	3.9e-23	FAR1 HTH-like domain
ZSWIM1-3_RNaseH-like	PF21056	239 - 351	1.4e-06	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	269 - 361	1.3e-19	MULE transposase domain
SWIM	PF04434	544 - 579	2e-08	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AatII	GACGTC	1 cut(s)	205
Acc16I	TGCGCA	1 cut(s)	359
AccB7I	CCANNNNNTGG	2 cut(s)	1112, 1779
AccII	CGCG	2 cut(s)	91, 2149
AciI	CCGC	6 cut(s)	20, 370, 913, 1258, 1777, 2149
AclI	AACGTT	1 cut(s)	1351
AcoI	YGGCCR	3 cut(s)	69, 124, 232
AcsI	RAATTY	2 cut(s)	158, 791
AcuI	CTGAAG	2 cut(s)	318, 2073
AcvI	CACGTG	1 cut(s)	1946
AcyI	GRCGYC	1 cut(s)	202
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	4 cut(s)	211, 1073, 1315, 1966
AfiI	CCNNNNNNNGG	4 cut(s)	122, 1112, 1618, 1779
AflIII	ACRYGT	4 cut(s)	1008, 1316, 1945, 1970
AjiI	CACGTC	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	1599
Alw21I	GWGCWC	1 cut(s)	1665
Alw26I	GTCTC	4 cut(s)	461, 792, 1122, 1374
AlwNI	CAGNNNCTG	1 cut(s)	1456
AoxI	GGCC	5 cut(s)	69, 124, 232, 1286, 2161
ApeKI	GCWGC	7 cut(s)	149, 847, 1255, 1397, 1456, 1502, 1632
ApoI	RAATTY	2 cut(s)	158, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	1044, 1076
AseI	ATTAAT	1 cut(s)	1335
AspLEI	GCGC	3 cut(s)	360, 1255, 1905
AspS9I	GGNCC	2 cut(s)	1603, 2162
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	197, 1476
AvaII	GGWCC	1 cut(s)	1603
BalI	TGGCCA	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	1941, 1973
BbrPI	CACGTG	1 cut(s)	1946
BbsI	GAAGAC	2 cut(s)	956, 2116
Bbv12I	GWGCWC	1 cut(s)	1665
BbvI	GCAGC	7 cut(s)	136, 834, 1242, 1409, 1443, 1489, 1619
BccI	CCATC	7 cut(s)	19, 218, 296, 722, 1185, 1619, 1781
BcgI	CGANNNNNNTGC	4 cut(s)	302, 336, 1703, 1737
BciT130I	CCWGG	1 cut(s)	1601
BciVI	GTATCC	1 cut(s)	269
BclI	TGATCA	1 cut(s)	1147
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	4 cut(s)	461, 792, 1122, 1374
BfaI	CTAG	5 cut(s)	213, 578, 851, 1376, 1962
BfmI	CTRYAG	5 cut(s)	620, 1163, 1457, 1672, 1708
BfoI	RGCGCY	1 cut(s)	1906
BfuI	GTATCC	1 cut(s)	269
BisI	GCNGC	8 cut(s)	150, 848, 1256, 1398, 1457, 1503, 1633, 2150
BlsI	GCNGC	8 cut(s)	151, 849, 1257, 1399, 1458, 1504, 1634, 2151
Bme1390I	CCNGG	2 cut(s)	236, 1601
Bme18I	GGWCC	1 cut(s)	1603
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	1603, 2162
BmiI	GGNNCC	4 cut(s)	1560, 1650, 1990, 2164
BmrFI	CCNGG	2 cut(s)	236, 1601
BmsI	GCATC	6 cut(s)	136, 300, 643, 823, 1580, 1710
BoxI	GACNNNNGTC	1 cut(s)	495
BpiI	GAAGAC	2 cut(s)	956, 2116
BpmI	CTGGAG	3 cut(s)	468, 581, 764
BpuEI	CTTGAG	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	2 cut(s)	1946, 1973
BsaHI	GRCGYC	1 cut(s)	202
BsaI	GGTCTC	1 cut(s)	1122
BsaJI	CCNNGG	4 cut(s)	72, 235, 877, 1860
BsaWI	WCCGGW	1 cut(s)	2023
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 1112, 1618, 1779
Bse1I	ACTGG	3 cut(s)	55, 1580, 2182
Bse3DI	GCAATG	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	1601
BseDI	CCNNGG	4 cut(s)	72, 235, 877, 1860
BseGI	GGATG	8 cut(s)	30, 229, 531, 838, 922, 1344, 1701, 1773
BseLI	CCNNNNNNNGG	4 cut(s)	122, 1112, 1618, 1779
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	4 cut(s)	1338, 1631, 1827, 2165
BseNI	ACTGG	3 cut(s)	55, 1580, 2182
BseRI	GAGGAG	2 cut(s)	1509, 1913
BseXI	GCAGC	7 cut(s)	136, 834, 1242, 1409, 1443, 1489, 1619
BseYI	CCCAGC	2 cut(s)	521, 1427
BsgI	GTGCAG	1 cut(s)	1383
Bsh1236I	CGCG	2 cut(s)	91, 2149
Bsh1285I	CGRYCG	1 cut(s)	1262
BshFI	GGCC	5 cut(s)	71, 126, 234, 1288, 2163
BsiEI	CGRYCG	1 cut(s)	1262
BsiHKAI	GWGCWC	1 cut(s)	1665
BsiSI	CCGG	2 cut(s)	235, 2024
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	4 cut(s)	122, 1112, 1618, 1779
BsmAI	GTCTC	4 cut(s)	461, 792, 1122, 1374
BsmBI	CGTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	5 cut(s)	71, 126, 234, 1288, 2163
Bso31I	GGTCTC	1 cut(s)	1122
Bsp1286I	GDGCHC	1 cut(s)	1665
Bsp143I	GATC	5 cut(s)	195, 661, 1147, 1378, 1420
Bsp19I	CCATGG	2 cut(s)	877, 1860
Bsp68I	TCGCGA	1 cut(s)	91
BspACI	CCGC	6 cut(s)	20, 370, 913, 1258, 1777, 2149
BspANI	GGCC	5 cut(s)	71, 126, 234, 1288, 2163
BspCNI	CTCAG	4 cut(s)	1337, 1630, 1828, 2166
BspFNI	CGCG	2 cut(s)	91, 2149
BspHI	TCATGA	2 cut(s)	966, 2074
BspLI	GGNNCC	4 cut(s)	1560, 1650, 1990, 2164
BspMAI	CTGCAG	4 cut(s)	624, 1167, 1461, 1712
BspTNI	GGTCTC	1 cut(s)	1122
BsrDI	GCAATG	1 cut(s)	678
BsrI	ACTGG	3 cut(s)	55, 1580, 2182
BssECI	CCNNGG	4 cut(s)	72, 235, 877, 1860
BssMI	GATC	5 cut(s)	195, 661, 1147, 1378, 1420
BssNI	GRCGYC	1 cut(s)	202
BssT1I	CCWWGG	2 cut(s)	877, 1860
Bst2UI	CCWGG	1 cut(s)	1601
Bst4CI	ACNGT	3 cut(s)	209, 473, 2125
Bst6I	CTCTTC	2 cut(s)	244, 1581
BstACI	GRCGYC	1 cut(s)	202
BstAPI	GCANNNNNTGC	2 cut(s)	1444, 1707
BstBAI	YACGTR	2 cut(s)	1946, 1973
BstC8I	GCNNGC	8 cut(s)	294, 372, 905, 1224, 1395, 1500, 1712, 2161
BstDEI	CTNAG	4 cut(s)	1324, 1617, 1836, 2174
BstDSI	CCRYGG	2 cut(s)	877, 1860
BstF5I	GGATG	8 cut(s)	30, 229, 531, 838, 922, 1344, 1701, 1773
BstFNI	CGCG	2 cut(s)	91, 2149
BstH2I	RGCGCY	1 cut(s)	1906
BstHHI	GCGC	3 cut(s)	360, 1255, 1905
BstKTI	GATC	5 cut(s)	198, 664, 1150, 1381, 1423
BstMAI	GTCTC	4 cut(s)	461, 792, 1122, 1374
BstMBI	GATC	5 cut(s)	195, 661, 1147, 1378, 1420
BstMCI	CGRYCG	1 cut(s)	1262
BstMWI	GCNNNNNNNGC	4 cut(s)	1444, 1453, 1707, 2149
BstNI	CCWGG	1 cut(s)	1601
BstNSI	RCATGY	6 cut(s)	511, 1012, 1226, 1238, 1320, 1502
BstPAI	GACNNNNGTC	1 cut(s)	495
BstSCI	CCNGG	2 cut(s)	234, 1599
BstSFI	CTRYAG	5 cut(s)	620, 1163, 1457, 1672, 1708
BstUI	CGCG	2 cut(s)	91, 2149
BstV1I	GCAGC	7 cut(s)	136, 834, 1242, 1409, 1443, 1489, 1619
BstV2I	GAAGAC	2 cut(s)	956, 2116
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	5 cut(s)	71, 126, 234, 1288, 2163
BtgI	CCRYGG	2 cut(s)	877, 1860
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	8 cut(s)	30, 229, 531, 838, 922, 1344, 1701, 1773
BtsI	GCAGTG	3 cut(s)	810, 1371, 1938
BtsIMutI	CAGTG	4 cut(s)	537, 810, 1371, 1938
BtuMI	TCGCGA	1 cut(s)	91
Cac8I	GCNNGC	8 cut(s)	294, 372, 905, 1224, 1395, 1500, 1712, 2161
CaiI	CAGNNNCTG	1 cut(s)	1456
CciI	TCATGA	2 cut(s)	966, 2074
CfoI	GCGC	3 cut(s)	360, 1255, 1905
Cfr13I	GGNCC	2 cut(s)	1603, 2162
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	4 cut(s)	210, 1072, 1314, 1965
CviQI	GTAC	4 cut(s)	210, 1072, 1314, 1965
DdeI	CTNAG	4 cut(s)	1324, 1617, 1836, 2174
DpnI	GATC	5 cut(s)	197, 663, 1149, 1380, 1422
DpnII	GATC	5 cut(s)	195, 661, 1147, 1378, 1420
DraIII	CACNNNGTG	1 cut(s)	338
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	3 cut(s)	69, 124, 232
Eam1104I	CTCTTC	2 cut(s)	244, 1581
EarI	CTCTTC	2 cut(s)	244, 1581
Eco130I	CCWWGG	2 cut(s)	877, 1860
Eco147I	AGGCCT	1 cut(s)	1288
Eco31I	GGTCTC	1 cut(s)	1122
Eco47I	GGWCC	1 cut(s)	1603
Eco57I	CTGAAG	2 cut(s)	318, 2073
Eco72I	CACGTG	1 cut(s)	1946
EcoRII	CCWGG	1 cut(s)	1599
EcoT14I	CCWWGG	2 cut(s)	877, 1860
EcoT22I	ATGCAT	2 cut(s)	1528, 1573
ErhI	CCWWGG	2 cut(s)	877, 1860
Esp3I	CGTCTC	1 cut(s)	792
FalI	AAGNNNNNCTT	4 cut(s)	701, 733, 1533, 1565
FaqI	GGGAC	1 cut(s)	371
FauI	CCCGC	3 cut(s)	13, 363, 906
FauNDI	CATATG	2 cut(s)	1067, 1918
FbaI	TGATCA	1 cut(s)	1147
Fnu4HI	GCNGC	8 cut(s)	150, 848, 1256, 1398, 1457, 1503, 1633, 2150
FokI	GGATG	8 cut(s)	37, 236, 538, 845, 929, 1331, 1688, 1760
Fsp4HI	GCNGC	8 cut(s)	150, 848, 1256, 1398, 1457, 1503, 1633, 2150
FspAI	RTGCGCAY	1 cut(s)	359
FspBI	CTAG	5 cut(s)	213, 578, 851, 1376, 1962
FspI	TGCGCA	1 cut(s)	359
GlaI	GCGC	3 cut(s)	359, 1254, 1904
GluI	GCNGC	8 cut(s)	150, 848, 1256, 1398, 1457, 1503, 1633, 2150
GsaI	CCCAGC	2 cut(s)	525, 1431
GsuI	CTGGAG	3 cut(s)	468, 581, 764
HaeII	RGCGCY	1 cut(s)	1906
HaeIII	GGCC	5 cut(s)	71, 126, 234, 1288, 2163
HapII	CCGG	2 cut(s)	235, 2024
HgaI	GACGC	1 cut(s)	809
HhaI	GCGC	3 cut(s)	360, 1255, 1905
Hin1I	GRCGYC	1 cut(s)	202
Hin6I	GCGC	3 cut(s)	358, 1253, 1903
HinP1I	GCGC	3 cut(s)	358, 1253, 1903
HincII	GTYRAC	1 cut(s)	2038
HindII	GTYRAC	1 cut(s)	2038
HindIII	AAGCTT	1 cut(s)	2096
HpaII	CCGG	2 cut(s)	235, 2024
HphI	GGTGA	2 cut(s)	197, 1476
Hpy166II	GTNNAC	4 cut(s)	1484, 1695, 2003, 2038
Hpy188I	TCNGA	8 cut(s)	7, 200, 501, 1093, 1327, 1818, 1837, 2175
Hpy8I	GTNNAC	4 cut(s)	1484, 1695, 2003, 2038
HpyAV	CCTTC	2 cut(s)	470, 1967
HpyCH4III	ACNGT	3 cut(s)	209, 473, 2125
HpyCH4IV	ACGT	7 cut(s)	202, 417, 606, 1351, 1716, 1945, 1972
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1444, 1453, 1707, 2149
HpyF3I	CTNAG	4 cut(s)	1324, 1617, 1836, 2174
HpySE526I	ACGT	7 cut(s)	202, 417, 606, 1351, 1716, 1945, 1972
Hsp92I	GRCGYC	1 cut(s)	202
HspAI	GCGC	3 cut(s)	358, 1253, 1903
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	5 cut(s)	195, 661, 1147, 1378, 1420
LmnI	GCTCC	6 cut(s)	556, 745, 1564, 1660, 1900, 1988
Lsp1109I	GCAGC	7 cut(s)	136, 834, 1242, 1409, 1443, 1489, 1619
LweI	GCATC	6 cut(s)	136, 300, 643, 823, 1580, 1710
MaeI	CTAG	5 cut(s)	213, 578, 851, 1376, 1962
MaeII	ACGT	7 cut(s)	202, 417, 606, 1351, 1716, 1945, 1972
MaeIII	GTNAC	4 cut(s)	203, 241, 330, 1319
MalI	GATC	5 cut(s)	197, 663, 1149, 1380, 1422
MboI	GATC	5 cut(s)	195, 661, 1147, 1378, 1420
MfeI	CAATTG	2 cut(s)	1488, 2061
MhlI	GDGCHC	1 cut(s)	1665
MlsI	TGGCCA	1 cut(s)	126
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	6 cut(s)	71, 463, 505, 973, 1865, 2011
MmeI	TCCRAC	3 cut(s)	479, 534, 1372
Mox20I	TGGCCA	1 cut(s)	126
Mph1103I	ATGCAT	2 cut(s)	1528, 1573
MscI	TGGCCA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	126
MspA1I	CMGCKG	4 cut(s)	296, 1400, 1671, 1779
MspI	CCGG	2 cut(s)	235, 2024
MspR9I	CCNGG	2 cut(s)	236, 1601
MunI	CAATTG	2 cut(s)	1488, 2061
MvaI	CCWGG	1 cut(s)	1601
MvnI	CGCG	2 cut(s)	91, 2149
MwoI	GCNNNNNNNGC	4 cut(s)	1444, 1453, 1707, 2149
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	2 cut(s)	877, 1860
NdeI	CATATG	2 cut(s)	1067, 1918
NdeII	GATC	5 cut(s)	195, 661, 1147, 1378, 1420
NlaIV	GGNNCC	4 cut(s)	1560, 1650, 1990, 2164
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	4 cut(s)	203, 241, 330, 1319
NruI	TCGCGA	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	359
NsiI	ATGCAT	2 cut(s)	1528, 1573
NspI	RCATGY	6 cut(s)	511, 1012, 1226, 1238, 1320, 1502
PaeI	GCATGC	2 cut(s)	1226, 1502
PagI	TCATGA	2 cut(s)	966, 2074
PceI	AGGCCT	1 cut(s)	1288
PciI	ACATGT	2 cut(s)	1008, 1316
PfeI	GAWTC	7 cut(s)	82, 106, 1328, 1493, 1843, 1883, 2078
PflMI	CCANNNNNTGG	2 cut(s)	1112, 1779
PkrI	GCNGC	8 cut(s)	151, 849, 1257, 1399, 1458, 1504, 1634, 2151
PleI	GAGTC	6 cut(s)	71, 462, 504, 973, 1864, 2011
PmaCI	CACGTG	1 cut(s)	1946
PmlI	CACGTG	1 cut(s)	1946
PpsI	GAGTC	6 cut(s)	71, 462, 504, 973, 1864, 2011
Ppu21I	YACGTR	2 cut(s)	1946, 1973
PscI	ACATGT	2 cut(s)	1008, 1316
PshAI	GACNNNNGTC	1 cut(s)	495
PshBI	ATTAAT	1 cut(s)	1335
Psp1406I	AACGTT	1 cut(s)	1351
Psp6I	CCWGG	1 cut(s)	1599
PspCI	CACGTG	1 cut(s)	1946
PspFI	CCCAGC	2 cut(s)	521, 1427
PspGI	CCWGG	1 cut(s)	1599
PspN4I	GGNNCC	4 cut(s)	1560, 1650, 1990, 2164
PspPI	GGNCC	2 cut(s)	1603, 2162
PstI	CTGCAG	4 cut(s)	624, 1167, 1461, 1712
PstNI	CAGNNNCTG	1 cut(s)	1456
PvuII	CAGCTG	3 cut(s)	296, 1400, 1671
RruI	TCGCGA	1 cut(s)	91
RsaI	GTAC	4 cut(s)	211, 1073, 1315, 1966
RsaNI	GTAC	4 cut(s)	210, 1072, 1314, 1965
RseI	CAYNNNNRTG	1 cut(s)	270
SatI	GCNGC	8 cut(s)	150, 848, 1256, 1398, 1457, 1503, 1633, 2150
Sau3AI	GATC	5 cut(s)	195, 661, 1147, 1378, 1420
Sau96I	GGNCC	2 cut(s)	1603, 2162
SchI	GAGTC	6 cut(s)	71, 463, 505, 973, 1865, 2011
ScrFI	CCNGG	2 cut(s)	236, 1601
SduI	GDGCHC	1 cut(s)	1665
SfaNI	GCATC	6 cut(s)	136, 300, 643, 823, 1580, 1710
SfcI	CTRYAG	5 cut(s)	620, 1163, 1457, 1672, 1708
SinI	GGWCC	1 cut(s)	1603
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
SphI	GCATGC	2 cut(s)	1226, 1502
SseBI	AGGCCT	1 cut(s)	1288
SsiI	CCGC	6 cut(s)	20, 370, 913, 1258, 1777, 2149
SspI	AATATT	1 cut(s)	993
SspMI	CTAG	5 cut(s)	213, 578, 851, 1376, 1962
StuI	AGGCCT	1 cut(s)	1288
StyD4I	CCNGG	2 cut(s)	234, 1599
StyI	CCWWGG	2 cut(s)	877, 1860
TaaI	ACNGT	3 cut(s)	209, 473, 2125
TaiI	ACGT	7 cut(s)	205, 420, 609, 1354, 1719, 1948, 1975
TaqI	TCGA	4 cut(s)	80, 194, 346, 1689
TatI	WGTACW	2 cut(s)	1313, 1964
TauI	GCSGC	1 cut(s)	2152
TfiI	GAWTC	7 cut(s)	82, 106, 1328, 1493, 1843, 1883, 2078
TscAI	CASTG	4 cut(s)	537, 810, 1371, 1938
TseFI	GTSAC	4 cut(s)	203, 241, 330, 1319
TseI	GCWGC	7 cut(s)	149, 847, 1255, 1397, 1456, 1502, 1632
Tsp45I	GTSAC	4 cut(s)	203, 241, 330, 1319
TspGWI	ACGGA	1 cut(s)	1211
TspRI	CASTG	4 cut(s)	537, 810, 1371, 1938
Van91I	CCANNNNNTGG	2 cut(s)	1112, 1779
VpaK11BI	GGWCC	1 cut(s)	1603
VspI	ATTAAT	1 cut(s)	1335
XapI	RAATTY	2 cut(s)	158, 791
XceI	RCATGY	6 cut(s)	511, 1012, 1226, 1238, 1320, 1502
XspI	CTAG	5 cut(s)	213, 578, 851, 1376, 1962
ZraI	GACGTC	1 cut(s)	203
Zsp2I	ATGCAT	2 cut(s)	1528, 1573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.