MD06G1220900.v1.1

UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
35263163 .. 35266149
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1220900.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGCCGCCGTCGCCACCACTGCCGCCTTCCACCACCTCTCTCTCACTCCCAAGCTCCCAACTTTCCTACTCCCCGCAACCCCCTTAGCAAAACCCAGGACCTTGAAGCTGAAGATCACCTTCTGTTTGTCTCTACAGCAATCCAATGACCAAGCTCTCGCAACCCAAAACGCCGCCGTCGACAACCTCCGCGTGGTCTTCGCCGCAGGCGGCACCGGAGGCCACATATACCCGGCCGTAGCCATAGCCGACGAGCTCCAACTCACAAAACCCTCCTCCAAAATCCTCTTTTTGGGTTCACCAAACAGCATGGAAAGCACCGCAATACCCTCCGCCGGCTACGACTTCGACACCGTGCCCACCACCAAATTACACCGCCCAATATTCTCCCCCCGGAACCTCCTCCTCCCCTACAATTTGATCAGGTCCGTCGTCCACAGCTACTCAAAATTGCGCGACTTCGGCCCCCATGTCGTCATCGGCACCGGCGGGTATGTCTCCTTCTCTTTAGGCTTGGCGGCGAAGCTGATTGGCGCCAAGCTTGTGATCCAAGAACAGAACGGCGTTCCGGGAATCGCCAATTGGGTTCTGTCATTTTTTGCAGATGTTGTGTTTGTAGCTTACAATTGCACCATTGATTGTTTCCCGAGTGGTAGGACTAAGTGTGTGGTTTGTGGGAATCCGGTGAGGTTGTCCTTGAAGAAGCAAGTGCCTAAGGCGGCGGCAACAGGGCGGTTTTTTCCCAAGGCCGGCGGAGTTGGGGAGTTGGAGAAGGCTAAGGTTCTTTTGGTTCTTGGCGGGTCTTTGGGGGCTAATGCTATTAACATTGCTTTGCTGAATTTGTATTATCAGATGCTGCTGGAGAATGATAACTTGTTTATCATTTGGCAAACAGGAGTGGAGGTTCACAATGAAATGGAGAGCCTTGTTAAGAATCATCCGCACTTGCTATTGACGCCGTTCCTGCATTCAATGGATTTGGCATATGCAGCAGCAGACCTTATTGTTTCTAGAGCTGGTGCAATGACTTGCTATGAGATTTTGGCAACTGGGAAGCCTTCCATTCTGATACCATCACCAAATGTTGCTGAAGGTCATCAGTTCAGAAATGCTTCTTTAATGGCGGACTTAGCAGGTACAAGGGTTATAACAGAAGATGAACTTGATTCAACAACTCTTTGGAGTGCAATTGAAGAGATATTAGGGGACGAGAGTAAAATGGCAGAGTTGTCCGAGAGGGCTCTGAAAGCTGCAAATTCGAATGCCTCTACAGAGATTGTACAGCGTGTTCTTTCTCTAGTCAACTTGTCAACAAAAAAAGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

47.49

Weight (kDa)

8.41

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_28 PF03033 65 - 205 3.4e-31 Glycosyltransferase family 28 N-terminal domain
Glyco_tran_28_C PF04101 261 - 421 1.3e-33 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1148
Acc36I ACCTGC 1 cut(s) 1124
AccB1I GGYRCC 3 cut(s) 212, 482, 533
AccI GTMKAC 1 cut(s) 180
AccII CGCG 2 cut(s) 192, 456
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 2 cut(s) 3, 234
AcsI RAATTY 2 cut(s) 838, 1255
AcuI CTGAAG 2 cut(s) 131, 1110
AcyI GRCGYC 2 cut(s) 534, 956
AfaI GTAC 2 cut(s) 1138, 1281
AfiI CCNNNNNNNGG 4 cut(s) 193, 292, 335, 749
AgsI TTSAA 5 cut(s) 106, 700, 972, 1170, 1193
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 565, 597
AloI GAACNNNNNNTCC 2 cut(s) 888, 920
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 135, 502
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 856
Ama87I CYCGRG 1 cut(s) 646
AoxI GGCC 5 cut(s) 3, 220, 234, 463, 747
ApeKI GCWGC 4 cut(s) 856, 989, 992, 1250
ApoI RAATTY 2 cut(s) 838, 1255
Asp700I GAANNNNTTC 1 cut(s) 1111
AspLEI GCGC 2 cut(s) 456, 536
AspS9I GGNCC 3 cut(s) 99, 426, 464
AsuC2I CCSGG 3 cut(s) 233, 394, 570
AsuHPI GGTGA 4 cut(s) 109, 291, 697, 1068
AsuII TTCGAA 1 cut(s) 1259
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 2 cut(s) 99, 426
AxyI CCTNAGG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 360
BaeI ACNNNNGTAYC 2 cut(s) 1128, 1161
BanI GGYRCC 3 cut(s) 212, 482, 533
BanII GRGCYC 2 cut(s) 258, 1243
BarI GAAGNNNNNNTAC 2 cut(s) 485, 517
BbsI GAAGAC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 4 cut(s) 843, 1001, 1004, 1237
BccI CCATC 1 cut(s) 1081
BceAI ACGGC 4 cut(s) 161, 221, 577, 943
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 420
BcnI CCSGG 3 cut(s) 233, 394, 570
BcoDI GTCTC 2 cut(s) 135, 502
BfaI CTAG 2 cut(s) 1011, 1298
BfmI CTRYAG 2 cut(s) 134, 1269
BfoI RGCGCY 1 cut(s) 537
BfuAI ACCTGC 1 cut(s) 1124
Bme1390I CCNGG 4 cut(s) 97, 233, 394, 570
Bme18I GGWCC 2 cut(s) 99, 426
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 3 cut(s) 99, 426, 464
BmiI GGNNCC 5 cut(s) 214, 398, 466, 484, 535
BmrFI CCNGG 4 cut(s) 97, 233, 394, 570
BmrI ACTGGG 1 cut(s) 1059
BmsI GCATC 1 cut(s) 843
BmuI ACTGGG 1 cut(s) 1059
BpiI GAAGAC 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 881
Bpu10I CCTNAGC 2 cut(s) 85, 777
Bpu14I TTCGAA 1 cut(s) 1259
BpuMI CCSGG 3 cut(s) 233, 394, 570
BsaHI GRCGYC 2 cut(s) 534, 956
BsaJI CCNNGG 3 cut(s) 95, 392, 744
BsaWI WCCGGW 2 cut(s) 215, 682
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 292, 335, 749
Bse118I RCCGGY 3 cut(s) 335, 485, 749
Bse1I ACTGG 1 cut(s) 1054
Bse21I CCTNAGG 1 cut(s) 714
Bse3DI GCAATG 2 cut(s) 825, 1029
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 3 cut(s) 95, 392, 744
BseGI GGATG 1 cut(s) 937
BseLI CCNNNNNNNGG 4 cut(s) 193, 292, 335, 749
BseMI GCAATG 2 cut(s) 825, 1029
BseNI ACTGG 1 cut(s) 1054
BseRI GAGGAG 3 cut(s) 265, 392, 395
BseSI GKGCMC 1 cut(s) 360
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 4 cut(s) 843, 1001, 1004, 1237
Bsh1236I CGCG 2 cut(s) 192, 456
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 5 cut(s) 5, 222, 236, 465, 749
BshNI GGYRCC 3 cut(s) 212, 482, 533
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 8 cut(s) 216, 233, 336, 394, 486, 569, 683, 750
BslFI GGGAC 1 cut(s) 1220
BslI CCNNNNNNNGG 4 cut(s) 193, 292, 335, 749
BsmAI GTCTC 2 cut(s) 135, 502
BsmFI GGGAC 1 cut(s) 1220
BsmI GAATGC 2 cut(s) 967, 1267
BsnI GGCC 5 cut(s) 5, 222, 236, 465, 749
BsoBI CYCGRG 1 cut(s) 646
Bsp119I TTCGAA 1 cut(s) 1259
Bsp1286I GDGCHC 3 cut(s) 258, 360, 1243
Bsp1407I TGTACA 1 cut(s) 1279
Bsp143I GATC 3 cut(s) 114, 420, 546
BspANI GGCC 5 cut(s) 5, 222, 236, 465, 749
BspFNI CGCG 2 cut(s) 192, 456
BspLI GGNNCC 5 cut(s) 214, 398, 466, 484, 535
BspMI ACCTGC 1 cut(s) 1124
BspPI GGATC 1 cut(s) 541
BspT104I TTCGAA 1 cut(s) 1259
BspT107I GGYRCC 3 cut(s) 212, 482, 533
BsrDI GCAATG 2 cut(s) 825, 1029
BsrFI RCCGGY 3 cut(s) 335, 485, 749
BsrGI TGTACA 1 cut(s) 1279
BsrI ACTGG 1 cut(s) 1054
BssAI RCCGGY 3 cut(s) 335, 485, 749
BssECI CCNNGG 3 cut(s) 95, 392, 744
BssMI GATC 3 cut(s) 114, 420, 546
BssNI GRCGYC 2 cut(s) 534, 956
BssT1I CCWWGG 1 cut(s) 744
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 1188
BstACI GRCGYC 2 cut(s) 534, 956
BstAUI TGTACA 1 cut(s) 1279
BstBI TTCGAA 1 cut(s) 1259
BstC8I GCNNGC 3 cut(s) 208, 337, 751
BstDEI CTNAG 5 cut(s) 85, 660, 714, 777, 1129
BstF5I GGATG 1 cut(s) 937
BstFNI CGCG 2 cut(s) 192, 456
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 2 cut(s) 456, 536
BstKTI GATC 3 cut(s) 117, 423, 549
BstMAI GTCTC 2 cut(s) 135, 502
BstMBI GATC 3 cut(s) 114, 420, 546
BstMCI CGRYCG 1 cut(s) 237
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 4 cut(s) 95, 231, 392, 568
BstSFI CTRYAG 2 cut(s) 134, 1269
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 2 cut(s) 192, 456
BstV1I GCAGC 4 cut(s) 843, 1001, 1004, 1237
BstV2I GAAGAC 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 234
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 5 cut(s) 5, 222, 236, 465, 749
BtsCI GGATG 1 cut(s) 937
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 1124
Cac8I GCNNGC 3 cut(s) 208, 337, 751
CaiI CAGNNNCTG 1 cut(s) 856
CfoI GCGC 2 cut(s) 456, 536
Cfr10I RCCGGY 3 cut(s) 335, 485, 749
Cfr13I GGNCC 3 cut(s) 99, 426, 464
CseI GACGC 1 cut(s) 964
Csp6I GTAC 2 cut(s) 1137, 1280
CviAII CATG 2 cut(s) 310, 470
CviQI GTAC 2 cut(s) 1137, 1280
DdeI CTNAG 5 cut(s) 85, 660, 714, 777, 1129
DinI GGCGCC 1 cut(s) 535
DpnI GATC 3 cut(s) 116, 422, 548
DpnII GATC 3 cut(s) 114, 420, 546
EaeI YGGCCR 2 cut(s) 3, 234
EagI CGGCCG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 1188
EarI CTCTTC 1 cut(s) 1188
EciI GGCGGA 3 cut(s) 322, 768, 1139
Ecl136II GAGCTC 1 cut(s) 256
EclXI CGGCCG 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 744
Eco24I GRGCYC 2 cut(s) 258, 1243
Eco47I GGWCC 2 cut(s) 99, 426
Eco52I CGGCCG 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 131, 1110
Eco81I CCTNAGG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 744
EcoT38I GRGCYC 2 cut(s) 258, 1243
EgeI GGCGCC 1 cut(s) 535
EheI GGCGCC 1 cut(s) 535
ErhI CCWWGG 1 cut(s) 744
FaeI CATG 2 cut(s) 313, 473
FalI AAGNNNNNCTT 4 cut(s) 104, 136, 1146, 1178
FaqI GGGAC 1 cut(s) 1220
FatI CATG 2 cut(s) 309, 469
FauI CCCGC 3 cut(s) 82, 482, 791
FauNDI CATATG 1 cut(s) 985
FbaI TGATCA 1 cut(s) 420
FblI GTMKAC 1 cut(s) 180
FokI GGATG 1 cut(s) 924
FriOI GRGCYC 2 cut(s) 258, 1243
FspBI CTAG 2 cut(s) 1011, 1298
GlaI GCGC 2 cut(s) 455, 535
GsuI CTGGAG 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 5 cut(s) 5, 222, 236, 465, 749
HapII CCGG 8 cut(s) 216, 233, 336, 394, 486, 569, 683, 750
HgaI GACGC 1 cut(s) 964
HhaI GCGC 2 cut(s) 456, 536
Hin1I GRCGYC 2 cut(s) 534, 956
Hin1II CATG 2 cut(s) 313, 473
Hin6I GCGC 2 cut(s) 454, 534
HinP1I GCGC 2 cut(s) 454, 534
HincII GTYRAC 3 cut(s) 181, 1303, 1311
HindII GTYRAC 3 cut(s) 181, 1303, 1311
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 4 cut(s) 573, 679, 934, 1166
HpaII CCGG 8 cut(s) 216, 233, 336, 394, 486, 569, 683, 750
HphI GGTGA 4 cut(s) 109, 291, 697, 1068
Hpy166II GTNNAC 6 cut(s) 181, 299, 436, 907, 1303, 1311
Hpy188I TCNGA 5 cut(s) 852, 1068, 1106, 1234, 1245
Hpy188III TCNNGA 2 cut(s) 646, 1011
Hpy8I GTNNAC 6 cut(s) 181, 299, 436, 907, 1303, 1311
Hpy99I CGWCG 4 cut(s) 14, 182, 254, 434
HpyAV CCTTC 6 cut(s) 37, 130, 511, 766, 1068, 1085
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 7 cut(s) 602, 630, 967, 989, 1022, 1187, 1253
HpyF3I CTNAG 5 cut(s) 85, 660, 714, 777, 1129
Hsp92I GRCGYC 2 cut(s) 534, 956
Hsp92II CATG 2 cut(s) 313, 473
HspAI GCGC 2 cut(s) 454, 534
KasI GGCGCC 1 cut(s) 533
KroI GCCGGC 2 cut(s) 335, 749
KroNI GCCGGC 2 cut(s) 337, 751
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 3 cut(s) 114, 420, 546
LmnI GCTCC 2 cut(s) 60, 261
Lsp1109I GCAGC 4 cut(s) 843, 1001, 1004, 1237
LweI GCATC 1 cut(s) 843
MaeI CTAG 2 cut(s) 1011, 1298
MalI GATC 3 cut(s) 116, 422, 548
MboI GATC 3 cut(s) 114, 420, 546
MboII GAAGA 5 cut(s) 124, 190, 712, 1166, 1205
MfeI CAATTG 3 cut(s) 580, 625, 1188
MhlI GDGCHC 3 cut(s) 258, 360, 1243
MluCI AATT 8 cut(s) 368, 415, 449, 580, 625, 838, 1188, 1255
Mly113I GGCGCC 1 cut(s) 534
MmeI TCCRAC 2 cut(s) 283, 747
MroNI GCCGGC 2 cut(s) 335, 749
MroXI GAANNNNTTC 1 cut(s) 1111
MseI TTAA 3 cut(s) 822, 930, 1118
MspI CCGG 8 cut(s) 216, 233, 336, 394, 486, 569, 683, 750
MspR9I CCNGG 4 cut(s) 97, 233, 394, 570
MunI CAATTG 3 cut(s) 580, 625, 1188
Mva1269I GAATGC 2 cut(s) 967, 1267
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 2 cut(s) 192, 456
NaeI GCCGGC 2 cut(s) 337, 751
NarI GGCGCC 1 cut(s) 534
NciI CCSGG 3 cut(s) 233, 394, 570
NdeI CATATG 1 cut(s) 985
NdeII GATC 3 cut(s) 114, 420, 546
NgoMIV GCCGGC 2 cut(s) 335, 749
NlaIII CATG 2 cut(s) 313, 473
NlaIV GGNNCC 5 cut(s) 214, 398, 466, 484, 535
NspV TTCGAA 1 cut(s) 1259
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 2 cut(s) 967, 1267
PdiI GCCGGC 2 cut(s) 337, 751
PdmI GAANNNNTTC 1 cut(s) 1111
PfeI GAWTC 4 cut(s) 573, 679, 934, 1166
PfoI TCCNGGA 1 cut(s) 568
PluTI GGCGCC 1 cut(s) 537
PpuMI RGGWCCY 1 cut(s) 99
PsiI TTATAA 1 cut(s) 1148
Psp124BI GAGCTC 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 5 cut(s) 214, 398, 466, 484, 535
PspPI GGNCC 3 cut(s) 99, 426, 464
PspPPI RGGWCCY 1 cut(s) 99
PsrI GAACNNNNNNTAC 2 cut(s) 1272, 1304
PstNI CAGNNNCTG 1 cut(s) 856
RsaI GTAC 2 cut(s) 1138, 1281
RsaNI GTAC 2 cut(s) 1137, 1280
SacI GAGCTC 1 cut(s) 258
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 3 cut(s) 822, 930, 1118
Sau3AI GATC 3 cut(s) 114, 420, 546
Sau96I GGNCC 3 cut(s) 99, 426, 464
ScrFI CCNGG 4 cut(s) 97, 233, 394, 570
SduI GDGCHC 3 cut(s) 258, 360, 1243
SfaNI GCATC 1 cut(s) 843
SfcI CTRYAG 2 cut(s) 134, 1269
SfoI GGCGCC 1 cut(s) 535
SfuI TTCGAA 1 cut(s) 1259
SgrAI CRCCGGYG 1 cut(s) 485
SinI GGWCC 2 cut(s) 99, 426
Sse9I AATT 8 cut(s) 368, 415, 449, 580, 625, 838, 1188, 1255
SspDI GGCGCC 1 cut(s) 533
SspI AATATT 1 cut(s) 384
SspMI CTAG 2 cut(s) 1011, 1298
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 4 cut(s) 95, 231, 392, 568
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 1 cut(s) 355
TaqI TCGA 3 cut(s) 180, 348, 1259
TasI AATT 8 cut(s) 368, 415, 449, 580, 625, 838, 1188, 1255
TatI WGTACW 1 cut(s) 1279
TauI GCSGC 8 cut(s) 8, 26, 176, 206, 213, 521, 722, 725
TfiI GAWTC 4 cut(s) 573, 679, 934, 1166
Tru1I TTAA 3 cut(s) 822, 930, 1118
Tru9I TTAA 3 cut(s) 822, 930, 1118
TscAI CASTG 1 cut(s) 25
TseI GCWGC 4 cut(s) 856, 989, 992, 1250
TspDTI ATGAA 2 cut(s) 927, 1173
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 2 cut(s) 99, 426
XapI RAATTY 2 cut(s) 838, 1255
XbaI TCTAGA 1 cut(s) 1010
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 1111
XspI CTAG 2 cut(s) 1011, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.