Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8392303.1

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Forward (+)

244 .. 1185

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8392303.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggccgtcaccgccggcttcggtcacctctctttcgtccccaagttcccatcaacccaagtcaggacctttgacttcaagatcacctcctgtctctctctgaggcaatcaaatgacccaactctcgcctcccaaaacgacgccgtcccgttcgccagcctccgtgtagtcttcgccaccggtggcaccggcggccacatatacccggccgtcgccatagccgacgagctcaaaagcacagaccccaacgcccagattttgtttcttggcatacccaaaagcatggaaagcaaggccgtccccaacgccggctacgacttcgccgccgtcccctccgccaagttgcaccgcccgattttgtcacccagaaacgtgtttcttccctactacttgatcaagtcaataatatggagctactttaaattgagggagtttgatcctcatgttgtgatcggaaccggcgggtatgtgtcttttccggtaggcattgcggcggtgctgagaggagtgaagcttgtgattcaagaacagaatgctgttcccggaatagccaattgggtgctttcttttttagctgatgctgtgtttgtggcttttaattctactattgattgtttcccaagtgggagtggcaagtgtgtggtgtgtgggaatccggtgaggtcgttcttaaggcagaatgtgtctaaggcggtggcgagggggcggttttttcctaagtctggtgagatgggagaggaggaggtggagaaggtgaaggtgcttttggtgcttggagggtctttaggtgctaatgccgtgaacattgctatgctgaatttgtattatcagatgctgttggagaaggaggacttgttcatcatttggcagactggagtggaggcctataatgagatggagagccttgttaagaaccatccgcggctccttttgaagccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00550 ko01100 ko01502 ko04112 map00550 map01100 map01502 map04112

Pfam Domains

Protein Families

Glyco_tran_28_C Glyco_transf_28

Protein Analysis

313

Amino Acids

34.1

Weight (kDa)

8.95

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccII	CGCG	1 cut(s)	922
AclWI	GGATC	1 cut(s)	431
AcoI	YGGCCR	3 cut(s)	3, 193, 207
AcsI	RAATTY	1 cut(s)	817
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	63, 308, 722
AflII	CTTAAG	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	372
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	79, 524, 934
AjuI	GAANNNNNNNTTGG	4 cut(s)	538, 570, 749, 781
AloI	GAACNNNNNNTCC	2 cut(s)	839, 871
AluBI	AGCT	4 cut(s)	229, 414, 514, 575
AluI	AGCT	4 cut(s)	229, 414, 514, 575
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	431
AlwNI	CAGNNNCTG	1 cut(s)	835
AoxI	GGCC	5 cut(s)	3, 193, 207, 294, 882
ApoI	RAATTY	1 cut(s)	817
AsiGI	ACCGGT	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	2 cut(s)	206, 543
AsuHPI	GGTGA	6 cut(s)	17, 76, 354, 670, 737, 766
AvaII	GGWCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	4 cut(s)	58, 724, 889, 924
BceAI	ACGGC	6 cut(s)	128, 194, 281, 311, 782, 922
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	2 cut(s)	206, 543
BcoDI	GTCTC	1 cut(s)	98
BfrI	CTTAAG	1 cut(s)	670
BisI	GCNGC	4 cut(s)	193, 324, 492, 923
BlsI	GCNGC	4 cut(s)	194, 325, 493, 924
Bme1390I	CCNGG	2 cut(s)	206, 543
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	3 cut(s)	187, 457, 926
BmrFI	CCNGG	2 cut(s)	206, 543
BmsI	GCATC	2 cut(s)	568, 822
BpiI	GAAGAC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	894
BpuMI	CCSGG	2 cut(s)	206, 543
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	920
BsaWI	WCCGGW	3 cut(s)	179, 478, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	839, 869
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 308, 722
Bse118I	RCCGGY	5 cut(s)	14, 179, 188, 308, 458
Bse1I	ACTGG	1 cut(s)	877
Bse3DI	GCAATG	2 cut(s)	486, 804
BseDI	CCNNGG	1 cut(s)	920
BseGI	GGATG	1 cut(s)	916
BseLI	CCNNNNNNNGG	3 cut(s)	63, 308, 722
BseMI	GCAATG	2 cut(s)	486, 804
BseMII	CTCAG	2 cut(s)	92, 491
BseNI	ACTGG	1 cut(s)	877
BseRI	GAGGAG	3 cut(s)	519, 752, 755
BseX3I	CGGCCG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	922
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	5 cut(s)	5, 195, 209, 296, 884
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	9 cut(s)	15, 180, 189, 206, 309, 459, 479, 543, 656
BslFI	GGGAC	4 cut(s)	23, 131, 284, 314
BslI	CCNNNNNNNGG	3 cut(s)	63, 308, 722
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	4 cut(s)	23, 131, 284, 314
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	5 cut(s)	5, 195, 209, 296, 884
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	81, 393, 436, 450
BspANI	GGCC	5 cut(s)	5, 195, 209, 296, 884
BspCNI	CTCAG	2 cut(s)	93, 492
BspFNI	CGCG	1 cut(s)	922
BspLI	GGNNCC	3 cut(s)	187, 457, 926
BspPI	GGATC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	486, 804
BsrFI	RCCGGY	5 cut(s)	14, 179, 188, 308, 458
BsrI	ACTGG	1 cut(s)	877
BssAI	RCCGGY	5 cut(s)	14, 179, 188, 308, 458
BssECI	CCNNGG	1 cut(s)	920
BssMI	GATC	4 cut(s)	81, 393, 436, 450
BssNI	GRCGYC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	670
BstC8I	GCNNGC	3 cut(s)	16, 157, 310
BstDEI	CTNAG	4 cut(s)	101, 500, 687, 717
BstDSI	CCRYGG	1 cut(s)	920
BstEII	GGTNACC	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	916
BstFNI	CGCG	1 cut(s)	922
BstKTI	GATC	4 cut(s)	84, 396, 439, 453
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	4 cut(s)	81, 393, 436, 450
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 192, 288, 769
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	204, 541
BstUI	CGCG	1 cut(s)	922
BstV2I	GAAGAC	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	5 cut(s)	5, 195, 209, 296, 884
BtgI	CCRYGG	1 cut(s)	920
BtsCI	GGATG	1 cut(s)	916
Cac8I	GCNNGC	3 cut(s)	16, 157, 310
CaiI	CAGNNNCTG	1 cut(s)	835
Cfr10I	RCCGGY	5 cut(s)	14, 179, 188, 308, 458
Cfr13I	GGNCC	1 cut(s)	66
Cfr42I	CCGCGG	1 cut(s)	923
CseI	GACGC	1 cut(s)	149
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	2 cut(s)	283, 443
DdeI	CTNAG	4 cut(s)	101, 500, 687, 717
DpnI	GATC	4 cut(s)	83, 395, 438, 452
DpnII	GATC	4 cut(s)	81, 393, 436, 450
DraI	TTTAAA	1 cut(s)	421
EaeI	YGGCCR	3 cut(s)	3, 193, 207
EagI	CGGCCG	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	229
EclXI	CGGCCG	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	884
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	66
Eco52I	CGGCCG	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	229
Eco91I	GGTNACC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	66
EcoO65I	GGTNACC	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	286, 446
FalI	AAGNNNNNCTT	2 cut(s)	836, 868
FaqI	GGGAC	4 cut(s)	23, 131, 284, 314
FatI	CATG	2 cut(s)	282, 442
FauI	CCCGC	1 cut(s)	455
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	193, 324, 492, 923
FokI	GGATG	1 cut(s)	903
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	193, 324, 492, 923
GluI	GCNGC	4 cut(s)	193, 324, 492, 923
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	5 cut(s)	5, 195, 209, 296, 884
HapII	CCGG	9 cut(s)	15, 180, 189, 206, 309, 459, 479, 543, 656
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	286, 446
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	2 cut(s)	520, 652
HpaII	CCGG	9 cut(s)	15, 180, 189, 206, 309, 459, 479, 543, 656
HphI	GGTGA	6 cut(s)	17, 76, 354, 670, 737, 766
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	3 cut(s)	102, 455, 831
Hpy188III	TCNNGA	3 cut(s)	64, 79, 524
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	3 cut(s)	143, 215, 227
HpyAV	CCTTC	3 cut(s)	745, 751, 838
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 192, 288, 769
HpyF3I	CTNAG	4 cut(s)	101, 500, 687, 717
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	286, 446
KroI	GCCGGC	2 cut(s)	14, 308
KroNI	GCCGGC	2 cut(s)	16, 310
Ksp22I	TGATCA	1 cut(s)	393
KspI	CCGCGG	1 cut(s)	923
Kzo9I	GATC	4 cut(s)	81, 393, 436, 450
LmnI	GCTCC	2 cut(s)	411, 930
LweI	GCATC	2 cut(s)	568, 822
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	7, 23, 360
MalI	GATC	4 cut(s)	83, 395, 438, 452
MboI	GATC	4 cut(s)	81, 393, 436, 450
MboII	GAAGA	2 cut(s)	163, 371
MfeI	CAATTG	1 cut(s)	553
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	422, 553, 598, 817
MmeI	TCCRAC	1 cut(s)	819
MroNI	GCCGGC	2 cut(s)	14, 308
MseI	TTAA	4 cut(s)	420, 597, 671, 909
MslI	CAYNNNNRTG	1 cut(s)	809
MspA1I	CMGCKG	1 cut(s)	922
MspCI	CTTAAG	1 cut(s)	670
MspI	CCGG	9 cut(s)	15, 180, 189, 206, 309, 459, 479, 543, 656
MspR9I	CCNGG	2 cut(s)	206, 543
MunI	CAATTG	1 cut(s)	553
Mva1269I	GAATGC	1 cut(s)	538
MvnI	CGCG	1 cut(s)	922
MwoI	GCNNNNNNNGC	4 cut(s)	11, 192, 288, 769
NaeI	GCCGGC	2 cut(s)	16, 310
NciI	CCSGG	2 cut(s)	206, 543
NdeII	GATC	4 cut(s)	81, 393, 436, 450
NgoMIV	GCCGGC	2 cut(s)	14, 308
NlaIII	CATG	2 cut(s)	286, 446
NlaIV	GGNNCC	3 cut(s)	187, 457, 926
NmuCI	GTSAC	3 cut(s)	7, 23, 360
PceI	AGGCCT	1 cut(s)	884
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 312
PctI	GAATGC	1 cut(s)	538
PdiI	GCCGGC	2 cut(s)	16, 310
PfeI	GAWTC	2 cut(s)	520, 652
PflFI	GACNNNGTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	541
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	4 cut(s)	194, 325, 493, 924
PpuMI	RGGWCCY	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	66
PspEI	GGTNACC	1 cut(s)	23
PspN4I	GGNNCC	3 cut(s)	187, 457, 926
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	835
PsyI	GACNNNGTC	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	809
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	923
SaqAI	TTAA	4 cut(s)	420, 597, 671, 909
SatI	GCNGC	4 cut(s)	193, 324, 492, 923
Sau3AI	GATC	4 cut(s)	81, 393, 436, 450
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	2 cut(s)	206, 543
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	568, 822
Sfr303I	CCGCGG	1 cut(s)	923
SgrAI	CRCCGGYG	2 cut(s)	179, 188
SgrBI	CCGCGG	1 cut(s)	923
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
Sse9I	AATT	4 cut(s)	422, 553, 598, 817
SseBI	AGGCCT	1 cut(s)	884
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	884
StyD4I	CCNGG	2 cut(s)	204, 541
TaiI	ACGT	1 cut(s)	375
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	422, 553, 598, 817
TauI	GCSGC	4 cut(s)	195, 326, 494, 925
TfiI	GAWTC	2 cut(s)	520, 652
Tru1I	TTAA	4 cut(s)	420, 597, 671, 909
Tru9I	TTAA	4 cut(s)	420, 597, 671, 909
TseFI	GTSAC	3 cut(s)	7, 23, 360
Tsp45I	GTSAC	3 cut(s)	7, 23, 360
TspDTI	ATGAA	1 cut(s)	847
TspGWI	ACGGA	1 cut(s)	152
Tth111I	GACNNNGTC	1 cut(s)	143
Vha464I	CTTAAG	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.