Rroxscaffold_3G00274080

UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
65772251 .. 65775162
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00274080.1

Sequence Viewer

Length: 1308 bp
ATGGCCGCCACCGCCGGCTTCGGTCACTTCTCTTTCATACCCAAGTTCCCATCAACCCAAGTCAGGACCTTTGACTTCAAGATCACCTCCTGTCTCTCTCTAAGGCAATCAAATGACCCAACTCTCGCCTCCCAAAACGACGCCGTCCCGTTCGGCAGCCTCCGTGTAGTCTTCACCGCCGGTGGCACCGGCGGCCACATATACCCGGCCGTCGCCATAGCCGACGAGCTCAAAAGCACCAACCCCAACGCCCAGATGTTGTTTCTTGGCATACCCAAAAGCATGGAAAGCAAGGCCGTCCCCAACGCCGGCTACGACTTCGCTGCCGTCCCCTCCGCCAAGTTGCACCGCCCGATTTTGTCACCCAGAAACGTGTTTCTTCCGTATTACTTGATCAAGTCAATAATATGGAGCTACTTTAAATTGAGGGAGTTTGATCCTCATGTTGTGATCGGAACCGGCGGGTATGTGTCTTTTCCGGTAGGCATTGCGGCGGTGCTGAGAGGAGTGAAGCTTGTGATTCAGGAACAGAATGTTGTTCCCGGAATAGCCAATTGGGTGCTTTCTTTTTTAGCTGATGTTGTGTTTGTGGCTTTTAATTCTACTATTGATTGTTTCCCAAGTGGGAATGGGAAGTGTGTGGTGTGTGGGAATCCGGTGAGGTTGTCCTTAAGGAAGAATGTGTCCAAGGCGGAGGCTAGAGGGCGGTTTTTTCCAAAGTCCGGAGAGATGGGAGAGGAGAAAGTGGACAAGGTGAAGGTGCTTTTGGTGCTTGGAGGGTCTTTAGGTGCTAATGCCGTGAACATTGCTATGCTGAATTTGTATTATCAGATGCTGTTGGAGAAGGAGGACTTGTTCATCATTTGGCAGACTGGAGTGGAGGCCTATAATGAGATGGAGAGCCTTGTTAAGAACCATCCGCGGCTGCTTTTGAAGCCGTTCATGCATAAAATGGATCTGGCATATGCAGCTGCAGACCTAATAGTTTCGCGAGCTGGTGCAATGACTTGCTATGAGATCTTGGCAACTGGGAAGCCTTCCATTCTGATACCATCACCAGATGTTGCTGAAGGACATCAATTCAAAAATGCTTCTTTGATGGCAGACTTGGCAGGTGCAAGGGTTATAACTGAAGATGAACTTGATTCGACAACCCTTGGAAATGCAATTGAAGAGATATTAGGGGATGAAAGTAAAATGGCAGATATGTCCGAGAGGGCTCTGAAAGCTGCAAACTCCAATGCCTCTGTAGAGATTGCACAGCATGTCCTTTCTCTAGTCAGCTTATCAAGAGCAAAGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

435

Amino Acids

47.14

Weight (kDa)

8.43

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_28 PF03033 56 - 196 3e-31 Glycosyltransferase family 28 N-terminal domain
Glyco_tran_28_C PF04101 254 - 412 2.2e-35 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1127
AarI CACCTGC 1 cut(s) 1103
Acc36I ACCTGC 1 cut(s) 1103
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 2 cut(s) 922, 991
AccIII TCCGGA 1 cut(s) 722
AclWI GGATC 2 cut(s) 431, 963
AcoI YGGCCR 3 cut(s) 3, 193, 207
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 2 cut(s) 1089, 1152
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 3 cut(s) 63, 308, 722
AflII CTTAAG 1 cut(s) 670
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 4 cut(s) 79, 934, 1084, 1172
AjuI GAANNNNNNNTTGG 4 cut(s) 538, 570, 749, 781
AloI GAACNNNNNNTCC 2 cut(s) 839, 871
AluBI AGCT 8 cut(s) 229, 414, 514, 575, 971, 995, 1229, 1284
AluI AGCT 8 cut(s) 229, 414, 514, 575, 971, 995, 1229, 1284
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 431, 963
AlwNI CAGNNNCTG 1 cut(s) 835
Aor13HI TCCGGA 1 cut(s) 722
AoxI GGCC 5 cut(s) 3, 193, 207, 294, 882
ApeKI GCWGC 6 cut(s) 156, 323, 925, 968, 971, 1229
ApoI RAATTY 1 cut(s) 817
Asp700I GAANNNNTTC 1 cut(s) 938
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 2 cut(s) 206, 543
AsuHPI GGTGA 6 cut(s) 76, 166, 354, 670, 766, 1047
AvaII GGWCC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 2 cut(s) 231, 1222
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 6 cut(s) 168, 310, 912, 958, 980, 1216
BccI CCATC 6 cut(s) 58, 724, 889, 924, 1060, 1093
BceAI ACGGC 6 cut(s) 128, 194, 281, 311, 782, 922
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 2 cut(s) 206, 543
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 699, 1277
BfmI CTRYAG 2 cut(s) 972, 1248
BfrI CTTAAG 1 cut(s) 670
BfuAI ACCTGC 1 cut(s) 1103
BglII AGATCT 1 cut(s) 1017
Bme1390I CCNGG 2 cut(s) 206, 543
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 2 cut(s) 187, 457
BmrFI CCNGG 2 cut(s) 206, 543
BmrI ACTGGG 1 cut(s) 1038
BmsI GCATC 1 cut(s) 822
BmuI ACTGGG 1 cut(s) 1038
BpiI GAAGAC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 894
BpuMI CCSGG 2 cut(s) 206, 543
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 687, 920, 1156
BsaWI WCCGGW 3 cut(s) 478, 655, 722
BsaXI ACNNNNNCTCC 2 cut(s) 839, 869
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 308, 722
Bse118I RCCGGY 5 cut(s) 14, 179, 188, 308, 458
Bse1I ACTGG 2 cut(s) 877, 1033
Bse3DI GCAATG 3 cut(s) 486, 804, 1008
BseAI TCCGGA 1 cut(s) 722
BseDI CCNNGG 3 cut(s) 687, 920, 1156
BseGI GGATG 2 cut(s) 916, 1192
BseLI CCNNNNNNNGG 3 cut(s) 63, 308, 722
BseMI GCAATG 3 cut(s) 486, 804, 1008
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 2 cut(s) 877, 1033
BseRI GAGGAG 2 cut(s) 519, 752
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 6 cut(s) 168, 310, 912, 958, 980, 1216
Bsh1236I CGCG 2 cut(s) 922, 991
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 5 cut(s) 5, 195, 209, 296, 884
BshNI GGYRCC 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 231
BslFI GGGAC 3 cut(s) 131, 284, 314
BslI CCNNNNNNNGG 3 cut(s) 63, 308, 722
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 3 cut(s) 131, 284, 314
BsnI GGCC 5 cut(s) 5, 195, 209, 296, 884
Bsp1286I GDGCHC 2 cut(s) 231, 1222
Bsp13I TCCGGA 1 cut(s) 722
Bsp143I GATC 6 cut(s) 81, 393, 436, 450, 955, 1017
Bsp68I TCGCGA 1 cut(s) 991
BspANI GGCC 5 cut(s) 5, 195, 209, 296, 884
BspCNI CTCAG 1 cut(s) 492
BspEI TCCGGA 1 cut(s) 722
BspFNI CGCG 2 cut(s) 922, 991
BspLI GGNNCC 2 cut(s) 187, 457
BspMAI CTGCAG 1 cut(s) 976
BspMI ACCTGC 1 cut(s) 1103
BspPI GGATC 2 cut(s) 431, 963
BspT107I GGYRCC 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 670
BsrDI GCAATG 3 cut(s) 486, 804, 1008
BsrFI RCCGGY 5 cut(s) 14, 179, 188, 308, 458
BsrI ACTGG 2 cut(s) 877, 1033
BssAI RCCGGY 5 cut(s) 14, 179, 188, 308, 458
BssECI CCNNGG 3 cut(s) 687, 920, 1156
BssMI GATC 6 cut(s) 81, 393, 436, 450, 955, 1017
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 687, 1156
Bst6I CTCTTC 1 cut(s) 1167
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 670
BstC8I GCNNGC 3 cut(s) 16, 310, 993
BstDEI CTNAG 2 cut(s) 101, 500
BstDSI CCRYGG 1 cut(s) 920
BstF5I GGATG 2 cut(s) 916, 1192
BstFNI CGCG 2 cut(s) 922, 991
BstKTI GATC 6 cut(s) 84, 396, 439, 453, 958, 1020
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 6 cut(s) 81, 393, 436, 450, 955, 1017
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 9 cut(s) 11, 192, 288, 769, 934, 943, 968, 1109, 1226
BstNSI RCATGY 1 cut(s) 1268
BstSCI CCNGG 2 cut(s) 204, 541
BstSFI CTRYAG 2 cut(s) 972, 1248
BstUI CGCG 2 cut(s) 922, 991
BstV1I GCAGC 6 cut(s) 168, 310, 912, 958, 980, 1216
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 2 cut(s) 955, 1017
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 2 cut(s) 955, 1017
BstZI CGGCCG 1 cut(s) 207
BsuRI GGCC 5 cut(s) 5, 195, 209, 296, 884
BtgI CCRYGG 1 cut(s) 920
BtsCI GGATG 2 cut(s) 916, 1192
BtuMI TCGCGA 1 cut(s) 991
BveI ACCTGC 1 cut(s) 1103
Cac8I GCNNGC 3 cut(s) 16, 310, 993
CaiI CAGNNNCTG 1 cut(s) 835
Cfr10I RCCGGY 5 cut(s) 14, 179, 188, 308, 458
Cfr13I GGNCC 1 cut(s) 66
Cfr42I CCGCGG 1 cut(s) 923
CseI GACGC 1 cut(s) 149
CviAII CATG 4 cut(s) 283, 443, 943, 1265
DdeI CTNAG 2 cut(s) 101, 500
DpnI GATC 6 cut(s) 83, 395, 438, 452, 957, 1019
DpnII GATC 6 cut(s) 81, 393, 436, 450, 955, 1017
DraI TTTAAA 1 cut(s) 421
EaeI YGGCCR 3 cut(s) 3, 193, 207
EagI CGGCCG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 1167
EarI CTCTTC 1 cut(s) 1167
EciI GGCGGA 2 cut(s) 325, 707
Ecl136II GAGCTC 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 687, 1156
Eco147I AGGCCT 1 cut(s) 884
Eco24I GRGCYC 2 cut(s) 231, 1222
Eco47I GGWCC 1 cut(s) 66
Eco52I CGGCCG 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 1089, 1152
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 687, 1156
EcoT22I ATGCAT 1 cut(s) 948
EcoT38I GRGCYC 2 cut(s) 231, 1222
ErhI CCWWGG 2 cut(s) 687, 1156
FaeI CATG 4 cut(s) 286, 446, 946, 1268
FalI AAGNNNNNCTT 4 cut(s) 836, 868, 1125, 1157
FaqI GGGAC 3 cut(s) 131, 284, 314
FatI CATG 4 cut(s) 282, 442, 942, 1264
FauI CCCGC 1 cut(s) 455
FauNDI CATATG 1 cut(s) 964
FbaI TGATCA 1 cut(s) 393
FokI GGATG 2 cut(s) 903, 1199
FriOI GRGCYC 2 cut(s) 231, 1222
FspBI CTAG 2 cut(s) 699, 1277
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 5 cut(s) 5, 195, 209, 296, 884
HgaI GACGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 4 cut(s) 286, 446, 946, 1268
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 3 cut(s) 520, 652, 1145
HphI GGTGA 6 cut(s) 76, 166, 354, 670, 766, 1047
Hpy166II GTNNAC 2 cut(s) 748, 802
Hpy188I TCNGA 5 cut(s) 455, 831, 1047, 1213, 1224
Hpy188III TCNNGA 6 cut(s) 64, 79, 524, 723, 990, 1290
Hpy8I GTNNAC 2 cut(s) 748, 802
Hpy99I CGWCG 3 cut(s) 143, 215, 227
HpyAV CCTTC 4 cut(s) 751, 838, 1047, 1064
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 9 cut(s) 346, 946, 968, 974, 1001, 1118, 1166, 1232, 1259
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 192, 288, 769, 934, 943, 968, 1109, 1226
HpyF3I CTNAG 2 cut(s) 101, 500
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 4 cut(s) 286, 446, 946, 1268
Kpn2I TCCGGA 1 cut(s) 722
KroI GCCGGC 2 cut(s) 14, 308
KroNI GCCGGC 2 cut(s) 16, 310
Ksp22I TGATCA 1 cut(s) 393
KspI CCGCGG 1 cut(s) 923
Kzo9I GATC 6 cut(s) 81, 393, 436, 450, 955, 1017
LmnI GCTCC 1 cut(s) 411
Lsp1109I GCAGC 6 cut(s) 168, 310, 912, 958, 980, 1216
LweI GCATC 1 cut(s) 822
MaeI CTAG 2 cut(s) 699, 1277
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 23, 360
MalI GATC 6 cut(s) 83, 395, 438, 452, 957, 1019
MboI GATC 6 cut(s) 81, 393, 436, 450, 955, 1017
MboII GAAGA 5 cut(s) 163, 371, 688, 1145, 1184
MfeI CAATTG 2 cut(s) 553, 1167
MflI RGATCY 2 cut(s) 955, 1017
MhlI GDGCHC 2 cut(s) 231, 1222
MluCI AATT 6 cut(s) 422, 553, 598, 817, 1079, 1167
MmeI TCCRAC 1 cut(s) 819
Mph1103I ATGCAT 1 cut(s) 948
MroI TCCGGA 1 cut(s) 722
MroNI GCCGGC 2 cut(s) 14, 308
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 4 cut(s) 420, 597, 671, 909
MslI CAYNNNNRTG 1 cut(s) 809
MspA1I CMGCKG 2 cut(s) 922, 971
MspCI CTTAAG 1 cut(s) 670
MspR9I CCNGG 2 cut(s) 206, 543
MunI CAATTG 2 cut(s) 553, 1167
MvnI CGCG 2 cut(s) 922, 991
MwoI GCNNNNNNNGC 9 cut(s) 11, 192, 288, 769, 934, 943, 968, 1109, 1226
NaeI GCCGGC 2 cut(s) 16, 310
NciI CCSGG 2 cut(s) 206, 543
NdeI CATATG 1 cut(s) 964
NdeII GATC 6 cut(s) 81, 393, 436, 450, 955, 1017
NgoMIV GCCGGC 2 cut(s) 14, 308
NlaIII CATG 4 cut(s) 286, 446, 946, 1268
NlaIV GGNNCC 2 cut(s) 187, 457
NmuCI GTSAC 2 cut(s) 23, 360
NruI TCGCGA 1 cut(s) 991
NsiI ATGCAT 1 cut(s) 948
NspI RCATGY 1 cut(s) 1268
PaqCI CACCTGC 1 cut(s) 1103
PceI AGGCCT 1 cut(s) 884
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 312
PdiI GCCGGC 2 cut(s) 16, 310
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 3 cut(s) 520, 652, 1145
PflFI GACNNNGTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 541
PpuMI RGGWCCY 1 cut(s) 66
PsiI TTATAA 1 cut(s) 1127
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 187, 457
PspPI GGNCC 1 cut(s) 66
PspPPI RGGWCCY 1 cut(s) 66
PstI CTGCAG 1 cut(s) 976
PstNI CAGNNNCTG 1 cut(s) 835
PsuI RGATCY 2 cut(s) 955, 1017
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 971
RruI TCGCGA 1 cut(s) 991
RseI CAYNNNNRTG 1 cut(s) 809
SacI GAGCTC 1 cut(s) 231
SacII CCGCGG 1 cut(s) 923
SaqAI TTAA 4 cut(s) 420, 597, 671, 909
Sau3AI GATC 6 cut(s) 81, 393, 436, 450, 955, 1017
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 2 cut(s) 206, 543
SduI GDGCHC 2 cut(s) 231, 1222
SfaNI GCATC 1 cut(s) 822
SfcI CTRYAG 2 cut(s) 972, 1248
Sfr303I CCGCGG 1 cut(s) 923
SgrAI CRCCGGYG 2 cut(s) 179, 188
SgrBI CCGCGG 1 cut(s) 923
SinI GGWCC 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 6 cut(s) 422, 553, 598, 817, 1079, 1167
SseBI AGGCCT 1 cut(s) 884
SspMI CTAG 2 cut(s) 699, 1277
SstI GAGCTC 1 cut(s) 231
StuI AGGCCT 1 cut(s) 884
StyD4I CCNGG 2 cut(s) 204, 541
StyI CCWWGG 2 cut(s) 687, 1156
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 1148
TaqII GACCGA 1 cut(s) 11
TasI AATT 6 cut(s) 422, 553, 598, 817, 1079, 1167
TauI GCSGC 4 cut(s) 8, 195, 494, 925
TfiI GAWTC 3 cut(s) 520, 652, 1145
Tru1I TTAA 4 cut(s) 420, 597, 671, 909
Tru9I TTAA 4 cut(s) 420, 597, 671, 909
TseFI GTSAC 2 cut(s) 23, 360
TseI GCWGC 6 cut(s) 156, 323, 925, 968, 971, 1229
Tsp45I GTSAC 2 cut(s) 23, 360
TspDTI ATGAA 5 cut(s) 25, 847, 931, 1152, 1203
TspGWI ACGGA 2 cut(s) 152, 372
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 1 cut(s) 817
XceI RCATGY 1 cut(s) 1268
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 2 cut(s) 699, 1277
Zsp2I ATGCAT 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.