pycom06g19680

UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
23014472 .. 23016784
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g19680.1

Sequence Viewer

Length: 1311 bp
ATGGCCGCCTTCCGCCACCTCTCTCTCACTCCCAAGCTCCCAACTTTCCCACTCCCCGCAACCCCCTTAGCAAAACCCAGGACCTTGAAGCTGAAGATCACCTTCTGTTTGTCTCTACAGCAATCCAATGACCAAGCTCTCGCAACCCAAAACGCCGCCGTCGACAACCTCCGCGTGGTCTTCGCCGCAGGCGGCACCGGAGGCCACATATACCCGGCCGTAGCCATAGCCGACGAGCTCCAACTCACAAAACCCTCCTCCAAAATCCTCTTTTTGGGTTCACCCAACAGCATGGAAAGCACCGCAATACCCTCCGCCGGCTACGACTTCGACACCGTGCCCACCACCAAATTACACCGCCCAATATTCTCCCCCCAGAACCTCCTCCTCCCCTACAATTTGATCAGGTCCGTCGTCCACAGCTACTCAAAATTGCGCGAATTCGGCCCCCATGTCGTCATCGGCACCGGCGGGTATGTCTCCTTCTCTTTAGGCTTGGCGGCAAAGCTGATTGGCGCCAAGCTTGTGATCCAAGAACAGAACGGCGTTCCGGGAATCGCCAATTGGGTTCTGTCATTTTTTGCAGATGTTGTGTTTGTAGCTTACAATTGCACCATTGATTGCTTCCCGAGTGGTAGGACTAAGTGTGTGGTTTGTGGGAATCCGGTGAGGCTGTCCTTGAAGAAGCAAGTGCCTAAGGCGGCGGCAACAGGGCGGTTTTTTCCCAAGGCCGGCGGAGTTGGGGAGTTGGAGAAAGCTAAGGTTCTTTTGGTTCTTGGCGGGTCTTTGGGGGCTAATGCTATTAACATTGCTTTGCTGAATTTGTATTATCAGATGCTGCTGGAGAATGATAACTTGTTTATCATATGGCAAACAGGAGTGGAGGTTCACAATGAAATGGAGAGCCTTGTTAAGAATCATCCGCACTTGCTATTGACGCCGTTCCTGCATTCAATGGATTTGGCATATGCAGCAGCAGACCTTATTGTTTCTAGAGCTGGTGCAATGACTTGCTATGAGATTTTGGCAACTGGGAAGCCTTCCATTCTGATACCATCACCAAATGTTGCTGAAGGTCATCAGTTCAGAAATGCTTCTTTAATGGCGGACTTAGCTGGTACAAGGGTTATAACAGAAGATGAACTTGATTCAACAACTCTTGGGAGTGCAATTGAAGAGATATTAGGGGACGAGAGTAAAATGGCAGAGTTGTCCGAGAGGGCTCTGAAAGCTGCAAATTCGAATGCCTCTACAGAGATTGTACAGCGTGTTCTTTCTCTAGTCAACTTGTCAACAACAAAAGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

46.81

Weight (kDa)

8.13

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_28 PF03033 59 - 199 1.4e-31 Glycosyltransferase family 28 N-terminal domain
Glyco_tran_28_C PF04101 255 - 415 1.3e-33 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1130
AccB1I GGYRCC 3 cut(s) 194, 464, 515
AccI GTMKAC 1 cut(s) 162
AccII CGCG 2 cut(s) 174, 438
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 2 cut(s) 3, 216
AcsI RAATTY 3 cut(s) 440, 820, 1237
AcuI CTGAAG 2 cut(s) 113, 1092
AcyI GRCGYC 2 cut(s) 516, 938
AfaI GTAC 2 cut(s) 1120, 1263
AfiI CCNNNNNNNGG 4 cut(s) 175, 274, 317, 731
AgsI TTSAA 5 cut(s) 88, 682, 954, 1152, 1175
AjnI CCWGG 1 cut(s) 77
AjuI GAANNNNNNNTTGG 2 cut(s) 547, 579
AloI GAACNNNNNNTCC 2 cut(s) 870, 902
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 2 cut(s) 117, 484
AlwI GGATC 1 cut(s) 523
AlwNI CAGNNNCTG 1 cut(s) 838
Ama87I CYCGRG 1 cut(s) 628
AoxI GGCC 5 cut(s) 3, 202, 216, 445, 729
ApeKI GCWGC 4 cut(s) 838, 971, 974, 1232
ApoI RAATTY 3 cut(s) 440, 820, 1237
Asp700I GAANNNNTTC 1 cut(s) 1093
AspLEI GCGC 2 cut(s) 438, 518
AspS9I GGNCC 3 cut(s) 81, 408, 446
AsuC2I CCSGG 2 cut(s) 215, 552
AsuHPI GGTGA 4 cut(s) 91, 273, 679, 1050
AsuII TTCGAA 1 cut(s) 1241
AvaI CYCGRG 1 cut(s) 628
AvaII GGWCC 2 cut(s) 81, 408
AxyI CCTNAGG 1 cut(s) 696
BaeGI GKGCMC 1 cut(s) 342
BaeI ACNNNNGTAYC 2 cut(s) 1110, 1143
BanI GGYRCC 3 cut(s) 194, 464, 515
BanII GRGCYC 2 cut(s) 240, 1225
BarI GAAGNNNNNNTAC 2 cut(s) 467, 499
BbsI GAAGAC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 4 cut(s) 825, 983, 986, 1219
BccI CCATC 1 cut(s) 1063
BceAI ACGGC 4 cut(s) 143, 203, 559, 925
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 402
BcnI CCSGG 2 cut(s) 215, 552
BcoDI GTCTC 2 cut(s) 117, 484
BfaI CTAG 2 cut(s) 993, 1280
BfmI CTRYAG 2 cut(s) 116, 1251
BfoI RGCGCY 1 cut(s) 519
Bme1390I CCNGG 3 cut(s) 79, 215, 552
Bme18I GGWCC 2 cut(s) 81, 408
BmeT110I CYCGRG 1 cut(s) 628
BmgT120I GGNCC 3 cut(s) 81, 408, 446
BmiI GGNNCC 4 cut(s) 196, 448, 466, 517
BmrFI CCNGG 3 cut(s) 79, 215, 552
BmrI ACTGGG 1 cut(s) 1041
BmsI GCATC 1 cut(s) 825
BmuI ACTGGG 1 cut(s) 1041
BpiI GAAGAC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 863
Bpu10I CCTNAGC 2 cut(s) 67, 759
Bpu14I TTCGAA 1 cut(s) 1241
BpuMI CCSGG 2 cut(s) 215, 552
BsaHI GRCGYC 2 cut(s) 516, 938
BsaJI CCNNGG 2 cut(s) 77, 726
BsaWI WCCGGW 2 cut(s) 197, 664
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 274, 317, 731
Bse118I RCCGGY 3 cut(s) 317, 467, 731
Bse1I ACTGG 1 cut(s) 1036
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 2 cut(s) 807, 1011
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 77, 726
BseGI GGATG 1 cut(s) 919
BseLI CCNNNNNNNGG 4 cut(s) 175, 274, 317, 731
BseMI GCAATG 2 cut(s) 807, 1011
BseNI ACTGG 1 cut(s) 1036
BseRI GAGGAG 3 cut(s) 247, 374, 377
BseSI GKGCMC 1 cut(s) 342
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 4 cut(s) 825, 983, 986, 1219
Bsh1236I CGCG 2 cut(s) 174, 438
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 5 cut(s) 5, 204, 218, 447, 731
BshNI GGYRCC 3 cut(s) 194, 464, 515
BsiEI CGRYCG 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 628
BsiSI CCGG 7 cut(s) 198, 215, 318, 468, 551, 665, 732
BslFI GGGAC 1 cut(s) 1202
BslI CCNNNNNNNGG 4 cut(s) 175, 274, 317, 731
BsmAI GTCTC 2 cut(s) 117, 484
BsmFI GGGAC 1 cut(s) 1202
BsmI GAATGC 2 cut(s) 949, 1249
BsnI GGCC 5 cut(s) 5, 204, 218, 447, 731
BsoBI CYCGRG 1 cut(s) 628
Bsp119I TTCGAA 1 cut(s) 1241
Bsp1286I GDGCHC 3 cut(s) 240, 342, 1225
Bsp1407I TGTACA 1 cut(s) 1261
Bsp143I GATC 3 cut(s) 96, 402, 528
BspANI GGCC 5 cut(s) 5, 204, 218, 447, 731
BspFNI CGCG 2 cut(s) 174, 438
BspLI GGNNCC 4 cut(s) 196, 448, 466, 517
BspPI GGATC 1 cut(s) 523
BspT104I TTCGAA 1 cut(s) 1241
BspT107I GGYRCC 3 cut(s) 194, 464, 515
BsrDI GCAATG 2 cut(s) 807, 1011
BsrFI RCCGGY 3 cut(s) 317, 467, 731
BsrGI TGTACA 1 cut(s) 1261
BsrI ACTGG 1 cut(s) 1036
BssAI RCCGGY 3 cut(s) 317, 467, 731
BssECI CCNNGG 2 cut(s) 77, 726
BssMI GATC 3 cut(s) 96, 402, 528
BssNI GRCGYC 2 cut(s) 516, 938
BssT1I CCWWGG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 1170
BstACI GRCGYC 2 cut(s) 516, 938
BstAUI TGTACA 1 cut(s) 1261
BstBI TTCGAA 1 cut(s) 1241
BstC8I GCNNGC 3 cut(s) 190, 319, 733
BstDEI CTNAG 5 cut(s) 67, 642, 696, 759, 1111
BstF5I GGATG 1 cut(s) 919
BstFNI CGCG 2 cut(s) 174, 438
BstH2I RGCGCY 1 cut(s) 519
BstHHI GCGC 2 cut(s) 438, 518
BstKTI GATC 3 cut(s) 99, 405, 531
BstMAI GTCTC 2 cut(s) 117, 484
BstMBI GATC 3 cut(s) 96, 402, 528
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 8 cut(s) 201, 297, 444, 937, 946, 971, 1112, 1229
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 3 cut(s) 77, 213, 550
BstSFI CTRYAG 2 cut(s) 116, 1251
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 2 cut(s) 174, 438
BstV1I GCAGC 4 cut(s) 825, 983, 986, 1219
BstV2I GAAGAC 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 292
BstZI CGGCCG 1 cut(s) 216
Bsu36I CCTNAGG 1 cut(s) 696
BsuRI GGCC 5 cut(s) 5, 204, 218, 447, 731
BtsCI GGATG 1 cut(s) 919
Cac8I GCNNGC 3 cut(s) 190, 319, 733
CaiI CAGNNNCTG 1 cut(s) 838
CfoI GCGC 2 cut(s) 438, 518
Cfr10I RCCGGY 3 cut(s) 317, 467, 731
Cfr13I GGNCC 3 cut(s) 81, 408, 446
CseI GACGC 1 cut(s) 946
Csp6I GTAC 2 cut(s) 1119, 1262
CviAII CATG 2 cut(s) 292, 452
CviQI GTAC 2 cut(s) 1119, 1262
DdeI CTNAG 5 cut(s) 67, 642, 696, 759, 1111
DinI GGCGCC 1 cut(s) 517
DpnI GATC 3 cut(s) 98, 404, 530
DpnII GATC 3 cut(s) 96, 402, 528
EaeI YGGCCR 2 cut(s) 3, 216
EagI CGGCCG 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 1170
EarI CTCTTC 1 cut(s) 1170
EciI GGCGGA 3 cut(s) 304, 750, 1121
Ecl136II GAGCTC 1 cut(s) 238
EclXI CGGCCG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 726
Eco24I GRGCYC 2 cut(s) 240, 1225
Eco47I GGWCC 2 cut(s) 81, 408
Eco52I CGGCCG 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 113, 1092
Eco81I CCTNAGG 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 628
EcoICRI GAGCTC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 726
EcoT38I GRGCYC 2 cut(s) 240, 1225
EgeI GGCGCC 1 cut(s) 517
EheI GGCGCC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 2 cut(s) 295, 455
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 1128, 1160
FaqI GGGAC 1 cut(s) 1202
FatI CATG 2 cut(s) 291, 451
FauI CCCGC 3 cut(s) 64, 464, 773
FauNDI CATATG 2 cut(s) 866, 967
FbaI TGATCA 1 cut(s) 402
FblI GTMKAC 1 cut(s) 162
FokI GGATG 1 cut(s) 906
FriOI GRGCYC 2 cut(s) 240, 1225
FspBI CTAG 2 cut(s) 993, 1280
GlaI GCGC 2 cut(s) 437, 517
GsuI CTGGAG 1 cut(s) 863
HaeII RGCGCY 1 cut(s) 519
HaeIII GGCC 5 cut(s) 5, 204, 218, 447, 731
HapII CCGG 7 cut(s) 198, 215, 318, 468, 551, 665, 732
HgaI GACGC 1 cut(s) 946
HhaI GCGC 2 cut(s) 438, 518
Hin1I GRCGYC 2 cut(s) 516, 938
Hin1II CATG 2 cut(s) 295, 455
Hin6I GCGC 2 cut(s) 436, 516
HinP1I GCGC 2 cut(s) 436, 516
HincII GTYRAC 3 cut(s) 163, 1285, 1293
HindII GTYRAC 3 cut(s) 163, 1285, 1293
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 4 cut(s) 555, 661, 916, 1148
HpaII CCGG 7 cut(s) 198, 215, 318, 468, 551, 665, 732
HphI GGTGA 4 cut(s) 91, 273, 679, 1050
Hpy166II GTNNAC 6 cut(s) 163, 281, 418, 889, 1285, 1293
Hpy188I TCNGA 5 cut(s) 834, 1050, 1088, 1216, 1227
Hpy188III TCNNGA 2 cut(s) 628, 993
Hpy8I GTNNAC 6 cut(s) 163, 281, 418, 889, 1285, 1293
Hpy99I CGWCG 3 cut(s) 164, 236, 416
HpyAV CCTTC 5 cut(s) 19, 112, 493, 1050, 1067
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 7 cut(s) 584, 612, 949, 971, 1004, 1169, 1235
HpyF10VI GCNNNNNNNGC 8 cut(s) 201, 297, 444, 937, 946, 971, 1112, 1229
HpyF3I CTNAG 5 cut(s) 67, 642, 696, 759, 1111
Hsp92I GRCGYC 2 cut(s) 516, 938
Hsp92II CATG 2 cut(s) 295, 455
HspAI GCGC 2 cut(s) 436, 516
KasI GGCGCC 1 cut(s) 515
KroI GCCGGC 2 cut(s) 317, 731
KroNI GCCGGC 2 cut(s) 319, 733
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 3 cut(s) 96, 402, 528
LmnI GCTCC 2 cut(s) 42, 243
Lsp1109I GCAGC 4 cut(s) 825, 983, 986, 1219
LweI GCATC 1 cut(s) 825
MaeI CTAG 2 cut(s) 993, 1280
MalI GATC 3 cut(s) 98, 404, 530
MboI GATC 3 cut(s) 96, 402, 528
MboII GAAGA 5 cut(s) 106, 172, 694, 1148, 1187
MfeI CAATTG 3 cut(s) 562, 607, 1170
MhlI GDGCHC 3 cut(s) 240, 342, 1225
MluCI AATT 9 cut(s) 350, 397, 431, 440, 562, 607, 820, 1170, 1237
Mly113I GGCGCC 1 cut(s) 516
MmeI TCCRAC 2 cut(s) 265, 729
MroNI GCCGGC 2 cut(s) 317, 731
MroXI GAANNNNTTC 1 cut(s) 1093
MseI TTAA 3 cut(s) 804, 912, 1100
MspI CCGG 7 cut(s) 198, 215, 318, 468, 551, 665, 732
MspR9I CCNGG 3 cut(s) 79, 215, 552
MunI CAATTG 3 cut(s) 562, 607, 1170
Mva1269I GAATGC 2 cut(s) 949, 1249
MvaI CCWGG 1 cut(s) 79
MvnI CGCG 2 cut(s) 174, 438
MwoI GCNNNNNNNGC 8 cut(s) 201, 297, 444, 937, 946, 971, 1112, 1229
NaeI GCCGGC 2 cut(s) 319, 733
NarI GGCGCC 1 cut(s) 516
NciI CCSGG 2 cut(s) 215, 552
NdeI CATATG 2 cut(s) 866, 967
NdeII GATC 3 cut(s) 96, 402, 528
NgoMIV GCCGGC 2 cut(s) 317, 731
NlaIII CATG 2 cut(s) 295, 455
NlaIV GGNNCC 4 cut(s) 196, 448, 466, 517
NspV TTCGAA 1 cut(s) 1241
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 2 cut(s) 949, 1249
PdiI GCCGGC 2 cut(s) 319, 733
PdmI GAANNNNTTC 1 cut(s) 1093
PfeI GAWTC 4 cut(s) 555, 661, 916, 1148
PfoI TCCNGGA 1 cut(s) 550
PluTI GGCGCC 1 cut(s) 519
PpuMI RGGWCCY 1 cut(s) 81
PsiI TTATAA 1 cut(s) 1130
Psp124BI GAGCTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 4 cut(s) 196, 448, 466, 517
PspPI GGNCC 3 cut(s) 81, 408, 446
PspPPI RGGWCCY 1 cut(s) 81
PsrI GAACNNNNNNTAC 2 cut(s) 1254, 1286
PstNI CAGNNNCTG 1 cut(s) 838
RsaI GTAC 2 cut(s) 1120, 1263
RsaNI GTAC 2 cut(s) 1119, 1262
SacI GAGCTC 1 cut(s) 240
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 3 cut(s) 804, 912, 1100
Sau3AI GATC 3 cut(s) 96, 402, 528
Sau96I GGNCC 3 cut(s) 81, 408, 446
ScrFI CCNGG 3 cut(s) 79, 215, 552
SduI GDGCHC 3 cut(s) 240, 342, 1225
SfaNI GCATC 1 cut(s) 825
SfcI CTRYAG 2 cut(s) 116, 1251
SfoI GGCGCC 1 cut(s) 517
SfuI TTCGAA 1 cut(s) 1241
SgrAI CRCCGGYG 1 cut(s) 467
SinI GGWCC 2 cut(s) 81, 408
Sse9I AATT 9 cut(s) 350, 397, 431, 440, 562, 607, 820, 1170, 1237
SspDI GGCGCC 1 cut(s) 515
SspI AATATT 1 cut(s) 366
SspMI CTAG 2 cut(s) 993, 1280
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 77, 213, 550
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 1 cut(s) 337
TaqI TCGA 3 cut(s) 162, 330, 1241
TasI AATT 9 cut(s) 350, 397, 431, 440, 562, 607, 820, 1170, 1237
TatI WGTACW 1 cut(s) 1261
TauI GCSGC 7 cut(s) 8, 158, 188, 195, 503, 704, 707
TfiI GAWTC 4 cut(s) 555, 661, 916, 1148
Tru1I TTAA 3 cut(s) 804, 912, 1100
Tru9I TTAA 3 cut(s) 804, 912, 1100
TseI GCWGC 4 cut(s) 838, 971, 974, 1232
TspDTI ATGAA 2 cut(s) 909, 1155
TspGWI ACGGA 1 cut(s) 400
VpaK11BI GGWCC 2 cut(s) 81, 408
XapI RAATTY 3 cut(s) 440, 820, 1237
XbaI TCTAGA 1 cut(s) 992
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 1093
XspI CTAG 2 cut(s) 993, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.