RchiOBHm_Chr4g0425761

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002289
Physical Location & Seq
Reverse (-)
51335688 .. 51337676
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39487

Sequence Viewer

Length: 312 bp
ATGACTAAGACCCCAAAAGCCTCTCCTCTTCCGGTGGCCGCCCTCTCTCTTCATCCCCACCGAGCTTCTCTCTCTCTCTTAATCCTCATGGCTTCTTCAATTCACTACGATATTCGCTTCATGCTTCTTCTTCACTTGGCCACGTCATCGTTATCGTCATCATCGTCACCTTCGACGTCGTTCCGCGTCAGAGCTTTCTCCAATGATGAAGCGAAAGAGGCCGTGAAGCTTCCGGAGAAGCCGTCGATATGCACAGCCGACAAGCTCCACTACGTCTCCGTGCCCAACTCCTATTGGAGGCTCGTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4

Protein Analysis

103

Amino Acids

11.33

Weight (kDa)

9.73

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 179
AccII CGCG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 2 cut(s) 39, 184
AcoI YGGCCR 2 cut(s) 36, 138
AcyI GRCGYC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 1 cut(s) 99
AjiI CACGTC 1 cut(s) 144
AluBI AGCT 4 cut(s) 65, 194, 229, 265
AluI AGCT 4 cut(s) 65, 194, 229, 265
Alw26I GTCTC 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 3 cut(s) 36, 138, 219
AsuHPI GGTGA 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 285
BalI TGGCCA 1 cut(s) 140
BceAI ACGGC 2 cut(s) 206, 226
BcoDI GTCTC 1 cut(s) 280
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 54, 86
BsaHI GRCGYC 1 cut(s) 176
BsaWI WCCGGW 2 cut(s) 31, 232
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 232
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 15
BseSI GKGCMC 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 38, 140, 221
BsiSI CCGG 2 cut(s) 32, 233
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsnI GGCC 3 cut(s) 38, 140, 221
Bsp1286I GDGCHC 1 cut(s) 285
Bsp13I TCCGGA 1 cut(s) 232
BspACI CCGC 2 cut(s) 39, 184
BspANI GGCC 3 cut(s) 38, 140, 221
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 1 cut(s) 186
BssNI GRCGYC 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 33, 54
BstACI GRCGYC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 1 cut(s) 186
BsuRI GGCC 3 cut(s) 38, 140, 221
BtrI CACGTC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 52
CseI GACGC 1 cut(s) 175
CviAII CATG 2 cut(s) 88, 121
DdeI CTNAG 1 cut(s) 6
EaeI YGGCCR 2 cut(s) 36, 138
Eam1104I CTCTTC 2 cut(s) 33, 54
EarI CTCTTC 2 cut(s) 33, 54
EcoNI CCTNNNNNAGG 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 2 cut(s) 91, 124
FaiI YATR 3 cut(s) 89, 122, 250
FatI CATG 2 cut(s) 87, 120
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 3 cut(s) 38, 140, 221
HapII CCGG 2 cut(s) 32, 233
HgaI GACGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 2 cut(s) 91, 124
HindIII AAGCTT 1 cut(s) 227
HpaII CCGG 2 cut(s) 32, 233
HphI GGTGA 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 191, 311
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 3 cut(s) 178, 181, 247
HpyAV CCTTC 1 cut(s) 180
HpyCH4IV ACGT 3 cut(s) 143, 176, 273
HpyCH4V TGCA 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 3 cut(s) 143, 176, 273
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 2 cut(s) 91, 124
Kpn2I TCCGGA 1 cut(s) 232
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 2 cut(s) 45, 246
MaeII ACGT 3 cut(s) 143, 176, 273
MaeIII GTNAC 1 cut(s) 165
MboII GAAGA 5 cut(s) 20, 41, 87, 119, 122
MhlI GDGCHC 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 99
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 6 cut(s) 31, 36, 53, 95, 211, 291
Mox20I TGGCCA 1 cut(s) 140
MroI TCCGGA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 140
MspI CCGG 2 cut(s) 32, 233
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 218
NlaIII CATG 2 cut(s) 91, 124
NmuCI GTSAC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 170
PkrI GCNGC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 1 cut(s) 39
SduI GDGCHC 1 cut(s) 285
SetI ASST 8 cut(s) 67, 146, 172, 179, 196, 231, 267, 276
Sse9I AATT 1 cut(s) 99
SsiI CCGC 2 cut(s) 39, 184
TaiI ACGT 3 cut(s) 146, 179, 276
TaqI TCGA 2 cut(s) 173, 245
TasI AATT 1 cut(s) 99
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TseFI GTSAC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 3 cut(s) 41, 109, 222
TspGWI ACGGA 1 cut(s) 268
XagI CCTNNNNNAGG 1 cut(s) 295
ZraI GACGTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.