Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021620.1

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 713

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021620.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggcttcttcttcaattcactacgatattcgctgcgcccttcttcttcacttggccacgtcatcttcctcatcgccgtcgtcgtcgtcgtcgctatccacgattaggactctcggtccccaccgcataacctggcgcgcctccgcggcgcgtcgggtgctgtcgtcgttctcctcatcgccgcggacgacgtcgttccgcgtcagagctttctccaatgacgccgtggagcttccggagaagccgtcgatatgcaccgccgacgagctccactacgtctccgtgcccgactccgattggaggctcgccctctggcgctaccgcccttgccccaaggcccctcagaggagtcacccattgctgctattgtctggcgtggggaccaatgcaattggatacgatctctctcctgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4

Protein Analysis

138

Amino Acids

15.13

Weight (kDa)

9.56

Isoelectric Point (pI)

66.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AccII	CGCG	5 cut(s)	138, 146, 151, 184, 201
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	8 cut(s)	124, 144, 146, 182, 184, 199, 258, 322
AcoI	YGGCCR	1 cut(s)	54
AcyI	GRCGYC	2 cut(s)	191, 222
AfiI	CCNNNNNNNGG	3 cut(s)	105, 300, 345
AgsI	TTSAA	1 cut(s)	15
AhdI	GACNNNNNGTC	1 cut(s)	114
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	3 cut(s)	209, 232, 268
AluI	AGCT	3 cut(s)	209, 232, 268
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	283
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	2 cut(s)	54, 336
ApeKI	GCWGC	2 cut(s)	33, 361
AscI	GGCGCGCC	1 cut(s)	136
AspLEI	GCGC	5 cut(s)	38, 138, 140, 151, 318
AspS9I	GGNCC	3 cut(s)	116, 337, 381
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	116, 381
BaeGI	GKGCMC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	20, 348
BceAI	ACGGC	3 cut(s)	61, 209, 229
BciT130I	CCWGG	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	283
BfoI	RGCGCY	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	389
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	34, 147, 182, 362
BlsI	GCNGC	4 cut(s)	35, 148, 183, 363
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	2 cut(s)	116, 381
BmeRI	GACNNNNNGTC	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	116, 337, 381
BmiI	GGNNCC	3 cut(s)	118, 339, 382
BmrFI	CCNGG	1 cut(s)	133
BsaHI	GRCGYC	2 cut(s)	191, 222
BsaJI	CCNNGG	4 cut(s)	144, 182, 225, 333
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 263, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 300, 345
Bse3DI	GCAATG	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	4 cut(s)	144, 182, 225, 333
BseLI	CCNNNNNNNGG	3 cut(s)	105, 300, 345
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	356, 402
BsePI	GCGCGC	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	163, 361
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	20, 348
Bsh1236I	CGCG	5 cut(s)	138, 146, 151, 184, 201
BshFI	GGCC	2 cut(s)	56, 338
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	102, 394
BslI	CCNNNNNNNGG	3 cut(s)	105, 300, 345
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	102, 394
BsnI	GGCC	2 cut(s)	56, 338
Bsp1286I	GDGCHC	2 cut(s)	270, 288
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	8 cut(s)	124, 144, 146, 182, 184, 199, 258, 322
BspANI	GGCC	2 cut(s)	56, 338
BspCNI	CTCAG	2 cut(s)	355, 403
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	5 cut(s)	138, 146, 151, 184, 201
BspLI	GGNNCC	3 cut(s)	118, 339, 382
BsrDI	GCAATG	1 cut(s)	356
BssECI	CCNNGG	4 cut(s)	144, 182, 225, 333
BssHII	GCGCGC	1 cut(s)	136
BssMI	GATC	1 cut(s)	400
BssNI	GRCGYC	2 cut(s)	191, 222
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	133
BstACI	GRCGYC	2 cut(s)	191, 222
BstC8I	GCNNGC	2 cut(s)	138, 306
BstDEI	CTNAG	2 cut(s)	342, 411
BstDSI	CCRYGG	3 cut(s)	144, 182, 225
BstFNI	CGCG	5 cut(s)	138, 146, 151, 184, 201
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	5 cut(s)	38, 138, 140, 151, 318
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 157
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	5 cut(s)	138, 146, 151, 184, 201
BstV1I	GCAGC	2 cut(s)	20, 348
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	56, 338
BtgI	CCRYGG	3 cut(s)	144, 182, 225
BtgZI	GCGATG	2 cut(s)	57, 162
BtrI	CACGTC	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	138, 306
CfoI	GCGC	5 cut(s)	38, 138, 140, 151, 318
Cfr13I	GGNCC	3 cut(s)	116, 337, 381
Cfr42I	CCGCGG	2 cut(s)	147, 185
CseI	GACGC	3 cut(s)	140, 190, 230
CviJI	RGCY	8 cut(s)	5, 56, 209, 232, 244, 268, 304, 338
CviKI_1	RGCY	8 cut(s)	5, 56, 209, 232, 244, 268, 304, 338
DdeI	CTNAG	2 cut(s)	342, 411
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
DriI	GACNNNNNGTC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	54
Eam1105I	GACNNNNNGTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	116, 381
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	283
FaiI	YATR	2 cut(s)	128, 253
FaqI	GGGAC	2 cut(s)	102, 394
Fnu4HI	GCNGC	4 cut(s)	34, 147, 182, 362
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	4 cut(s)	34, 147, 182, 362
GlaI	GCGC	5 cut(s)	37, 137, 139, 150, 317
GluI	GCNGC	4 cut(s)	34, 147, 182, 362
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	56, 338
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	3 cut(s)	140, 190, 230
HhaI	GCGC	5 cut(s)	38, 138, 140, 151, 318
Hin1I	GRCGYC	2 cut(s)	191, 222
Hin6I	GCGC	5 cut(s)	36, 136, 138, 149, 316
HinP1I	GCGC	5 cut(s)	36, 136, 138, 149, 316
HinfI	GANTC	3 cut(s)	109, 290, 349
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	3 cut(s)	206, 295, 345
Hpy188III	TCNNGA	2 cut(s)	236, 410
HpyAV	CCTTC	1 cut(s)	50
HpyCH4IV	ACGT	3 cut(s)	59, 191, 276
HpyCH4V	TGCA	2 cut(s)	255, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 157
HpyF3I	CTNAG	2 cut(s)	342, 411
HpySE526I	ACGT	3 cut(s)	59, 191, 276
Hsp92I	GRCGYC	2 cut(s)	191, 222
HspAI	GCGC	5 cut(s)	36, 136, 138, 149, 316
Kpn2I	TCCGGA	1 cut(s)	235
KspI	CCGCGG	2 cut(s)	147, 185
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	2 cut(s)	229, 273
LpnPI	CCDG	5 cut(s)	118, 145, 249, 298, 357
Lsp1109I	GCAGC	2 cut(s)	20, 348
MaeII	ACGT	3 cut(s)	59, 191, 276
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	4 cut(s)	3, 35, 38, 57
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	2 cut(s)	270, 288
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	2 cut(s)	15, 390
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	3 cut(s)	103, 284, 358
MnlI	CCTC	7 cut(s)	79, 151, 184, 294, 320, 339, 351
Mox20I	TGGCCA	1 cut(s)	56
MroI	TCCGGA	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	146, 184
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	5 cut(s)	138, 146, 151, 184, 201
MwoI	GCNNNNNNNGC	2 cut(s)	146, 157
NdeII	GATC	1 cut(s)	400
NlaIV	GGNNCC	3 cut(s)	118, 339, 382
NmuCI	GTSAC	1 cut(s)	350
PalAI	GGCGCGCC	1 cut(s)	136
PauI	GCGCGC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	4 cut(s)	80, 86, 98, 185
PflFI	GACNNNGTC	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	35, 148, 183, 363
PleI	GAGTC	3 cut(s)	103, 284, 357
PpsI	GAGTC	3 cut(s)	103, 284, 357
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	3 cut(s)	118, 339, 382
PspPI	GGNCC	3 cut(s)	116, 337, 381
PsyI	GACNNNGTC	1 cut(s)	190
PteI	GCGCGC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	270
SacII	CCGCGG	2 cut(s)	147, 185
SatI	GCNGC	4 cut(s)	34, 147, 182, 362
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	3 cut(s)	116, 337, 381
SchI	GAGTC	3 cut(s)	103, 284, 358
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	2 cut(s)	270, 288
SetI	ASST	7 cut(s)	62, 134, 194, 211, 234, 270, 279
Sfr303I	CCGCGG	2 cut(s)	147, 185
SgrBI	CCGCGG	2 cut(s)	147, 185
SgsI	GGCGCGCC	1 cut(s)	136
SinI	GGWCC	2 cut(s)	116, 381
Sse9I	AATT	2 cut(s)	15, 390
SsiI	CCGC	8 cut(s)	124, 144, 146, 182, 184, 199, 258, 322
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	3 cut(s)	62, 194, 279
TaqI	TCGA	1 cut(s)	248
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	15, 390
TauI	GCSGC	2 cut(s)	149, 184
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	2 cut(s)	33, 361
Tsp45I	GTSAC	1 cut(s)	350
TspGWI	ACGGA	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	116, 381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.