Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Forward (+)

1720329 .. 1721279

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG024200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCCGCCGCCGCCGTCACCGCCGGCTTCGGTCACCTCTCTTTCGTCCCCAAGTTCCCATCAACCCAAGTCAGGACCTTTGACTTCAAGATCACCTCCTGTCTCTCTCTAAGGCAATCAAATGACCCAACTCTCGCCTCCCAAAACGACGCCGTCCCGTTCGGCAGCCTCCGTGTAGTCTTCGCCACCGGTGGCACCGGCGGCCACATATACCCAGCCGTCGCCATAGCCGACGAGCTCAAAAGCACAGACCCCAACGCCCAGATTTTGTTTCTTGGCATACACAAAAGCATGGAAAGCAAGGCCGTCCCCAACGCCGGCTACGACTTCGCCGCCGTCCCCTCCGCCAAGTTGCACCGCCCGATTTTGTCACCCAGAAACGTGTTTCTTCCCTATTACTTGATCAAGTCAATAATATGGAGCTACTTTAAATTGAGGGAGTTTGATCCTCATGTTGTGATCGGAACCGGCGGGTATGTGTCTTTTCCGGTAGGCATTGCGGCGGTGCTGAGAGGAGTGAAGCTTGTGATTCAAGAACAGAATGCTGTTCCCGGAATAGCCAATTGGGTGCTTTCTTTTTTAGCTGATGTTGTGTTTGTGGCTTTTAATTCTACTATTGATTGTTTCCCAAGTGGGAAGGGGAAGTGTGTGGTGTGTGGGAATCCGGTGAGGTCGTCCTTAAGGCAGAATGTGTCTAAGGCGGTGGCGAGGGGGCGGTTTTTTCCTAAGTCTGGTGAGATGGGAGAGGAGGAGGTGGAGAAGGTGAAGGTGCTTTTGGTGCTTGGAGGGTCTTTAGGTGCTAATGCCGTGAACATTGCTATGCTGAATTTGTATTATCAGATGCTGTTGGAGAAGGAGGACTTGTTCATCATTTGGCAGGCTGGAGTGGAGGCCTATAATGAGATGGAGAGCCTTGTTAAGAACCATCCACGGCTCCTTTTGAAGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00550 ko01100 ko01502 ko04112 map00550 map01100 map01502 map04112

Pfam Domains

Protein Families

Glyco_tran_28_C Glyco_transf_28

Protein Analysis

316

Amino Acids

34.32

Weight (kDa)

9.07

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_28	PF03033	59 - 199	1e-32	Glycosyltransferase family 28 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	440
AcoI	YGGCCR	2 cut(s)	3, 202
AcsI	RAATTY	1 cut(s)	826
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	3 cut(s)	72, 317, 731
AflII	CTTAAG	1 cut(s)	679
AflIII	ACRYGT	1 cut(s)	381
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	88, 533, 943
AjuI	GAANNNNNNNTTGG	4 cut(s)	547, 579, 758, 790
AloI	GAACNNNNNNTCC	2 cut(s)	848, 880
AluBI	AGCT	4 cut(s)	238, 423, 523, 584
AluI	AGCT	4 cut(s)	238, 423, 523, 584
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	1 cut(s)	844
AoxI	GGCC	4 cut(s)	3, 202, 303, 891
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	826
AsiGI	ACCGGT	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	7 cut(s)	10, 26, 85, 363, 679, 746, 775
AvaII	GGWCC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	4 cut(s)	67, 733, 898, 933
BceAI	ACGGC	7 cut(s)	137, 203, 290, 320, 791, 931, 947
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	107
BfrI	CTTAAG	1 cut(s)	679
BisI	GCNGC	7 cut(s)	6, 9, 12, 166, 202, 333, 501
BlsI	GCNGC	7 cut(s)	7, 10, 13, 167, 203, 334, 502
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	196, 466, 935
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	1 cut(s)	831
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	903
BpuMI	CCSGG	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	929
BsaWI	WCCGGW	3 cut(s)	188, 487, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	848, 878
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 317, 731
Bse118I	RCCGGY	5 cut(s)	23, 188, 197, 317, 467
Bse3DI	GCAATG	2 cut(s)	495, 813
BseDI	CCNNGG	1 cut(s)	929
BseGI	GGATG	1 cut(s)	925
BseLI	CCNNNNNNNGG	3 cut(s)	72, 317, 731
BseMI	GCAATG	2 cut(s)	495, 813
BseMII	CTCAG	1 cut(s)	500
BseRI	GAGGAG	3 cut(s)	528, 761, 764
BseXI	GCAGC	1 cut(s)	177
BseYI	CCCAGC	1 cut(s)	214
BshFI	GGCC	4 cut(s)	5, 204, 305, 893
BshNI	GGYRCC	1 cut(s)	194
BshTI	ACCGGT	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	8 cut(s)	24, 189, 198, 318, 468, 488, 552, 665
BslFI	GGGAC	4 cut(s)	32, 140, 293, 323
BslI	CCNNNNNNNGG	3 cut(s)	72, 317, 731
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	4 cut(s)	32, 140, 293, 323
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	4 cut(s)	5, 204, 305, 893
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	90, 402, 445, 459
BspANI	GGCC	4 cut(s)	5, 204, 305, 893
BspCNI	CTCAG	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	196, 466, 935
BspPI	GGATC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	679
BsrDI	GCAATG	2 cut(s)	495, 813
BsrFI	RCCGGY	5 cut(s)	23, 188, 197, 317, 467
BssAI	RCCGGY	5 cut(s)	23, 188, 197, 317, 467
BssECI	CCNNGG	1 cut(s)	929
BssMI	GATC	4 cut(s)	90, 402, 445, 459
BssNI	GRCGYC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	679
BstC8I	GCNNGC	3 cut(s)	25, 319, 879
BstDEI	CTNAG	4 cut(s)	110, 509, 696, 726
BstDSI	CCRYGG	1 cut(s)	929
BstEII	GGTNACC	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	925
BstKTI	GATC	4 cut(s)	93, 405, 448, 462
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	4 cut(s)	90, 402, 445, 459
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 201, 297, 778
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	172
BsuRI	GGCC	4 cut(s)	5, 204, 305, 893
BtgI	CCRYGG	1 cut(s)	929
BtsCI	GGATG	1 cut(s)	925
Cac8I	GCNNGC	3 cut(s)	25, 319, 879
CaiI	CAGNNNCTG	1 cut(s)	844
Cfr10I	RCCGGY	5 cut(s)	23, 188, 197, 317, 467
Cfr13I	GGNCC	1 cut(s)	75
CseI	GACGC	1 cut(s)	158
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	2 cut(s)	292, 452
DdeI	CTNAG	4 cut(s)	110, 509, 696, 726
DpnI	GATC	4 cut(s)	92, 404, 447, 461
DpnII	GATC	4 cut(s)	90, 402, 445, 459
DraI	TTTAAA	1 cut(s)	430
EaeI	YGGCCR	2 cut(s)	3, 202
EciI	GGCGGA	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	893
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	238
Eco91I	GGTNACC	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	75
EcoO65I	GGTNACC	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	2 cut(s)	295, 455
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FaqI	GGGAC	4 cut(s)	32, 140, 293, 323
FatI	CATG	2 cut(s)	291, 451
FauI	CCCGC	1 cut(s)	464
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	7 cut(s)	6, 9, 12, 166, 202, 333, 501
FokI	GGATG	1 cut(s)	912
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	7 cut(s)	6, 9, 12, 166, 202, 333, 501
GluI	GCNGC	7 cut(s)	6, 9, 12, 166, 202, 333, 501
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	4 cut(s)	5, 204, 305, 893
HapII	CCGG	8 cut(s)	24, 189, 198, 318, 468, 488, 552, 665
HgaI	GACGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	295, 455
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	2 cut(s)	529, 661
HpaII	CCGG	8 cut(s)	24, 189, 198, 318, 468, 488, 552, 665
HphI	GGTGA	7 cut(s)	10, 26, 85, 363, 679, 746, 775
Hpy166II	GTNNAC	1 cut(s)	811
Hpy188I	TCNGA	2 cut(s)	464, 840
Hpy188III	TCNNGA	3 cut(s)	73, 88, 533
Hpy8I	GTNNAC	1 cut(s)	811
Hpy99I	CGWCG	3 cut(s)	152, 224, 236
HpyAV	CCTTC	4 cut(s)	631, 754, 760, 847
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 201, 297, 778
HpyF3I	CTNAG	4 cut(s)	110, 509, 696, 726
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	295, 455
KroI	GCCGGC	2 cut(s)	23, 317
KroNI	GCCGGC	2 cut(s)	25, 319
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	90, 402, 445, 459
LmnI	GCTCC	2 cut(s)	420, 939
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	1 cut(s)	831
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	3 cut(s)	16, 32, 369
MalI	GATC	4 cut(s)	92, 404, 447, 461
MboI	GATC	4 cut(s)	90, 402, 445, 459
MboII	GAAGA	2 cut(s)	172, 380
MfeI	CAATTG	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	4 cut(s)	431, 562, 607, 826
MmeI	TCCRAC	1 cut(s)	828
MroNI	GCCGGC	2 cut(s)	23, 317
MseI	TTAA	4 cut(s)	429, 606, 680, 918
MslI	CAYNNNNRTG	1 cut(s)	818
MspCI	CTTAAG	1 cut(s)	679
MspI	CCGG	8 cut(s)	24, 189, 198, 318, 468, 488, 552, 665
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	1 cut(s)	562
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 201, 297, 778
NaeI	GCCGGC	2 cut(s)	25, 319
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	4 cut(s)	90, 402, 445, 459
NgoMIV	GCCGGC	2 cut(s)	23, 317
NlaIII	CATG	2 cut(s)	295, 455
NlaIV	GGNNCC	3 cut(s)	196, 466, 935
NmuCI	GTSAC	3 cut(s)	16, 32, 369
PceI	AGGCCT	1 cut(s)	893
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 321
PctI	GAATGC	1 cut(s)	547
PdiI	GCCGGC	2 cut(s)	25, 319
PfeI	GAWTC	2 cut(s)	529, 661
PflFI	GACNNNGTC	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	550
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	7 cut(s)	7, 10, 13, 167, 203, 334, 502
PpuMI	RGGWCCY	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	75
PspEI	GGTNACC	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	196, 466, 935
PspPI	GGNCC	1 cut(s)	75
PspPPI	RGGWCCY	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	844
PsyI	GACNNNGTC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	818
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	429, 606, 680, 918
SatI	GCNGC	7 cut(s)	6, 9, 12, 166, 202, 333, 501
Sau3AI	GATC	4 cut(s)	90, 402, 445, 459
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	831
SgrAI	CRCCGGYG	2 cut(s)	188, 197
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
Sse9I	AATT	4 cut(s)	431, 562, 607, 826
SseBI	AGGCCT	1 cut(s)	893
SstI	GAGCTC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	893
StyD4I	CCNGG	1 cut(s)	550
TaiI	ACGT	1 cut(s)	384
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	4 cut(s)	431, 562, 607, 826
TauI	GCSGC	6 cut(s)	8, 11, 14, 204, 335, 503
TfiI	GAWTC	2 cut(s)	529, 661
Tru1I	TTAA	4 cut(s)	429, 606, 680, 918
Tru9I	TTAA	4 cut(s)	429, 606, 680, 918
TseFI	GTSAC	3 cut(s)	16, 32, 369
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	3 cut(s)	16, 32, 369
TspDTI	ATGAA	1 cut(s)	856
TspGWI	ACGGA	1 cut(s)	161
Tth111I	GACNNNGTC	1 cut(s)	152
Vha464I	CTTAAG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.