Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Reverse (-)

31271243 .. 31274282

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG284700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCTTCTTCAATTCACTACGATATTCACTGCGTGCTTCTTCTTCACTTGGCCACGTCATCGTTATCGTCATCATCGTCACCTTCGATGTCGTTCCGCGTCAGAGCTTTCTCCAATGACGAAGCGAAAGAGGCCGCGAAGCTTCCGGAGAAGCAGTCAAAATGCACCGTCGACGAGCTCCACTACGTCTCCCTGCTGCAAGGTGCTGCGTTCTTTTCTCTTCATCTCTCAGAGTGTCAGAGATCGAAGGCTTCTATTCTTCGTCTTCAATTTGGGGTTATGGAAGGGACATCTGAGACTCCCAATTTCACTCCCATGCATACTCCAACTAATGGTTCCAGCACTGGAGCCACTCCAACACCCACACCCACTCCTACTCAGATGGTGGATCAAGGTCATCAACGAGGAGCTGCAGCACTGCCTAGTTGGATGAACAGACTAATACTTAATAGGACATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4

Protein Analysis

153

Amino Acids

16.62

Weight (kDa)

7.77

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	2 cut(s)	99, 137
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	2 cut(s)	97, 135
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	12, 269
AjiI	CACGTC	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AluBI	AGCT	4 cut(s)	107, 142, 178, 410
AluI	AGCT	4 cut(s)	107, 142, 178, 410
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	193, 290
AlwI	GGATC	1 cut(s)	396
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	2 cut(s)	51, 132
ApeKI	GCWGC	4 cut(s)	196, 206, 410, 413
AsuHPI	GGTGA	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	183, 193, 397, 425
BccI	CCATC	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	193, 290
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	411
BisI	GCNGC	5 cut(s)	135, 197, 207, 411, 414
BlsI	GCNGC	5 cut(s)	136, 198, 208, 412, 415
BmgBI	CACGTC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	337, 349
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 173, 203, 355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	145
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	3 cut(s)	243, 285, 392
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	420
BseXI	GCAGC	4 cut(s)	183, 193, 397, 425
Bsh1236I	CGCG	2 cut(s)	99, 137
BshFI	GGCC	2 cut(s)	53, 134
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	2 cut(s)	193, 290
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	53, 134
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	242, 388
BspACI	CCGC	2 cut(s)	97, 135
BspANI	GGCC	2 cut(s)	53, 134
BspCNI	CTCAG	3 cut(s)	242, 286, 391
BspEI	TCCGGA	1 cut(s)	145
BspFNI	CGCG	2 cut(s)	99, 137
BspLI	GGNNCC	2 cut(s)	337, 349
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	349
BssMI	GATC	2 cut(s)	242, 388
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	3 cut(s)	229, 294, 378
BstF5I	GGATG	1 cut(s)	435
BstFNI	CGCG	2 cut(s)	99, 137
BstKTI	GATC	2 cut(s)	245, 391
BstMAI	GTCTC	2 cut(s)	193, 290
BstMBI	GATC	2 cut(s)	242, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	2 cut(s)	99, 137
BstV1I	GCAGC	4 cut(s)	183, 193, 397, 425
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	53, 134
BtrI	CACGTC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	435
BtsI	GCAGTG	2 cut(s)	28, 416
BtsIMutI	CAGTG	3 cut(s)	28, 342, 416
Cac8I	GCNNGC	1 cut(s)	35
CseI	GACGC	1 cut(s)	88
CviAII	CATG	2 cut(s)	316, 456
CviJI	RGCY	9 cut(s)	5, 53, 107, 134, 142, 178, 251, 350, 410
CviKI_1	RGCY	9 cut(s)	5, 53, 107, 134, 142, 178, 251, 350, 410
DdeI	CTNAG	3 cut(s)	229, 294, 378
DpnI	GATC	2 cut(s)	244, 390
DpnII	GATC	2 cut(s)	242, 388
DraIII	CACNNNGTG	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	2 cut(s)	319, 459
FaiI	YATR	4 cut(s)	281, 317, 321, 457
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	2 cut(s)	315, 455
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	135, 197, 207, 411, 414
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	5 cut(s)	135, 197, 207, 411, 414
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	5 cut(s)	135, 197, 207, 411, 414
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	53, 134
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	319, 459
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	5 cut(s)	104, 232, 240, 295, 381
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	2 cut(s)	173, 176
HpyAV	CCTTC	3 cut(s)	93, 241, 278
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	2 cut(s)	56, 186
HpyCH4V	TGCA	4 cut(s)	165, 199, 319, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	229, 294, 378
HpySE526I	ACGT	2 cut(s)	56, 186
Hsp92II	CATG	2 cut(s)	319, 459
Kpn2I	TCCGGA	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	242, 388
LmnI	GCTCC	3 cut(s)	183, 347, 407
LpnPI	CCDG	4 cut(s)	159, 206, 330, 352
Lsp1109I	GCAGC	4 cut(s)	183, 193, 397, 425
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	2 cut(s)	56, 186
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	2 cut(s)	244, 390
MboI	GATC	2 cut(s)	242, 388
MboII	GAAGA	5 cut(s)	32, 35, 212, 251, 257
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	3 cut(s)	12, 269, 304
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	3 cut(s)	350, 380, 407
MnlI	CCTC	2 cut(s)	124, 398
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	321
MroI	TCCGGA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	1 cut(s)	146
MvnI	CGCG	2 cut(s)	99, 137
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	2 cut(s)	242, 388
NlaIII	CATG	2 cut(s)	319, 459
NlaIV	GGNNCC	2 cut(s)	337, 349
NmuCI	GTSAC	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	2 cut(s)	74, 83
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	5 cut(s)	136, 198, 208, 412, 415
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	337, 349
PstI	CTGCAG	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	180
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	5 cut(s)	135, 197, 207, 411, 414
Sau3AI	GATC	2 cut(s)	242, 388
SchI	GAGTC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	59, 85, 109, 144, 180, 189, 205, 397, 412
SfcI	CTRYAG	1 cut(s)	411
SgrDI	CGTCGACG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	3 cut(s)	12, 269, 304
SsiI	CCGC	2 cut(s)	97, 135
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	2 cut(s)	59, 189
TaqI	TCGA	3 cut(s)	86, 171, 245
TasI	AATT	3 cut(s)	12, 269, 304
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	3 cut(s)	35, 349, 423
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	4 cut(s)	196, 206, 410, 413
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	212, 446
TspRI	CASTG	3 cut(s)	35, 349, 423
Van91I	CCANNNNNTGG	1 cut(s)	332
XceI	RCATGY	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.