Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Reverse (-)

39924644 .. 39924943

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACCAAGATCCCAAAAGCCTCACCTCTTTCGGTGGCCGCCTCTCTCTTCATCCCCACCGAGCCTCTCTCTCTCTCTCTCTTAATCCCCATGGCTTCTTCAATTCACTACGATATTCGCTGCGTGCTTCTTCTTCACTTGGCCACGTCATCGTTATCGTCATCATCGTCACCTTCGACGTCGTTCCGCTTAAGAGTTTTCTGCAATGACGAAGCGAAAGGGGCCGTGAAGCTTCCGGAGAAGCCGTTGATATGCACCGCCGACGAGCTCCACTACGTCTCCGTGCCCAACTCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4

Protein Analysis

99

Amino Acids

10.63

Weight (kDa)

6.81

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	3 cut(s)	39, 187, 258
AclWI	GGATC	1 cut(s)	4
AcoI	YGGCCR	2 cut(s)	36, 141
AcyI	GRCGYC	1 cut(s)	179
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	102
AjiI	CACGTC	1 cut(s)	147
AluBI	AGCT	2 cut(s)	232, 268
AluI	AGCT	2 cut(s)	232, 268
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	4
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	3 cut(s)	36, 141, 222
ApeKI	GCWGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	15, 162
BaeGI	GKGCMC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	107
BceAI	ACGGC	2 cut(s)	209, 229
BcoDI	GTCTC	1 cut(s)	283
BfrI	CTTAAG	1 cut(s)	190
BisI	GCNGC	2 cut(s)	39, 121
BlsI	GCNGC	2 cut(s)	40, 122
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	223
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BsaHI	GRCGYC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 263, 293
Bse3DI	GCAATG	1 cut(s)	211
BseAI	TCCGGA	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	107
BshFI	GGCC	3 cut(s)	38, 143, 224
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BsnI	GGCC	3 cut(s)	38, 143, 224
Bsp1286I	GDGCHC	2 cut(s)	270, 288
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	3 cut(s)	39, 187, 258
BspANI	GGCC	3 cut(s)	38, 143, 224
BspEI	TCCGGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	179
BstAFI	CTTAAG	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	3 cut(s)	38, 143, 224
BtgI	CCRYGG	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	222
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	9 cut(s)	20, 38, 64, 95, 143, 224, 232, 244, 268
CviKI_1	RGCY	9 cut(s)	20, 38, 64, 95, 143, 224, 232, 244, 268
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	2 cut(s)	36, 141
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 253
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	39, 121
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	39, 121
GluI	GCNGC	2 cut(s)	39, 121
HaeIII	GGCC	3 cut(s)	38, 143, 224
HapII	CCGG	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	230
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	15, 162
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	236
Hpy99I	CGWCG	3 cut(s)	181, 184, 266
HpyAV	CCTTC	1 cut(s)	183
HpyCH4IV	ACGT	3 cut(s)	146, 179, 276
HpyCH4V	TGCA	2 cut(s)	204, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpySE526I	ACGT	3 cut(s)	146, 179, 276
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	94
Kpn2I	TCCGGA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	1 cut(s)	249
Lsp1109I	GCAGC	1 cut(s)	107
MaeII	ACGT	3 cut(s)	146, 179, 276
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	4 cut(s)	40, 90, 122, 125
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	2 cut(s)	270, 288
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	143
MnlI	CCTC	4 cut(s)	31, 36, 52, 75
Mox20I	TGGCCA	1 cut(s)	143
MroI	TCCGGA	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	83, 191
Msp20I	TGGCCA	1 cut(s)	143
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	164, 173
PkrI	GCNGC	2 cut(s)	40, 122
Psp124BI	GAGCTC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	83, 191
SatI	GCNGC	2 cut(s)	39, 121
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	270, 288
SetI	ASST	7 cut(s)	28, 149, 175, 182, 234, 270, 279
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	3 cut(s)	39, 187, 258
SstI	GAGCTC	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	3 cut(s)	149, 182, 279
TaqI	TCGA	1 cut(s)	176
TasI	AATT	1 cut(s)	102
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	83, 191
Tru9I	TTAA	2 cut(s)	83, 191
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	40
TspGWI	ACGGA	1 cut(s)	271
Vha464I	CTTAAG	1 cut(s)	190
ZraI	GACGTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.