Rroxscaffold_6G00394940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002289
Physical Location & Seq
Reverse (-)
15807230 .. 15809491
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394940.1

Sequence Viewer

Length: 519 bp
ATGCTCAACCCAGCCTCCGGCGACCTAGGCTTCGACGAATCGATCGTCGAACTTCCGTGCCACCGGAGCATCTCCACCGGTTGTACATGTCCGGGTCCATCGGGTTGTACCGGGACAACCGCTCCTCCTCGCCGGGCACGTCGGGTGCTATCGTCGTTCTCCTCCTCGCCGTGGACGACGTTGATCCGCGTCGAGCTTTCTCCAATGACCGTCGAAATAGGTCGTCAAGCTTCGGAGAAGCGGTCGACATGCACCGCCGATGAGCTCCACCATCAACCTCGTCCCAAATCCAATCGATTCTCGGAGCTTCAAGTCACCGGTGAAAGCCTTCATTCCATAATTTTCATCACTGCAAGAACTGCTTACACGGCCTTCACTAAGAGCACTGCTCTCTCCTCCGACAATGATCCCATTCAACTCTATCTTCAGCTTCGAAGTTTAGTTTCAAACACGGACAACTCGGTGACTCCGAATGAAGGGCCTTGTCGCGATCCTTCTCGGCATGCTCTATTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.76

Weight (kDa)

7.66

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 245
AccII CGCG 2 cut(s) 189, 489
AciI CCGC 4 cut(s) 120, 187, 241, 255
AclWI GGATC 3 cut(s) 178, 401, 485
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 2 cut(s) 85, 109
AfiI CCNNNNNNNGG 3 cut(s) 17, 171, 476
AflIII ACRYGT 1 cut(s) 86
AgeI ACCGGT 2 cut(s) 77, 317
AgsI TTSAA 4 cut(s) 311, 416, 447, 515
AjiI CACGTC 1 cut(s) 140
AluBI AGCT 5 cut(s) 196, 230, 265, 307, 430
AluI AGCT 5 cut(s) 196, 230, 265, 307, 430
Alw21I GWGCWC 2 cut(s) 267, 386
AlwI GGATC 3 cut(s) 178, 401, 485
AoxI GGCC 2 cut(s) 369, 479
ArsI GACNNNNNNTTYG 4 cut(s) 14, 30, 46, 62
AsiGI ACCGGT 2 cut(s) 77, 317
Asp700I GAANNNNTTC 1 cut(s) 327
AspA2I CCTAGG 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 95, 479
AsuC2I CCSGG 3 cut(s) 93, 112, 134
AsuHPI GGTGA 3 cut(s) 307, 332, 475
AsuII TTCGAA 1 cut(s) 433
AvaII GGWCC 1 cut(s) 95
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 2 cut(s) 267, 386
BccI CCATC 2 cut(s) 106, 279
BceAI ACGGC 2 cut(s) 154, 384
BcnI CCSGG 3 cut(s) 93, 112, 134
BfaI CTAG 1 cut(s) 26
BlnI CCTAGG 1 cut(s) 25
Bme1390I CCNGG 3 cut(s) 93, 112, 134
Bme18I GGWCC 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 95, 479
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 3 cut(s) 93, 112, 134
BmsI GCATC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 373, 405
Bpu14I TTCGAA 1 cut(s) 433
BpuMI CCSGG 3 cut(s) 93, 112, 134
Bsa29I ATCGAT 2 cut(s) 41, 295
BsaJI CCNNGG 2 cut(s) 25, 170
BsaWI WCCGGW 3 cut(s) 63, 77, 317
BsaXI ACNNNNNCTCC 7 cut(s) 29, 106, 109, 136, 139, 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 171, 476
Bse118I RCCGGY 2 cut(s) 77, 317
BseCI ATCGAT 2 cut(s) 41, 295
BseDI CCNNGG 2 cut(s) 25, 170
BseLI CCNNNNNNNGG 3 cut(s) 17, 171, 476
BseRI GAGGAG 5 cut(s) 114, 117, 151, 154, 385
BseSI GKGCMC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 2 cut(s) 189, 489
Bsh1285I CGRYCG 2 cut(s) 45, 245
BshFI GGCC 2 cut(s) 371, 481
BshTI ACCGGT 2 cut(s) 77, 317
BshVI ATCGAT 2 cut(s) 41, 295
BsiEI CGRYCG 2 cut(s) 45, 245
BsiHKAI GWGCWC 2 cut(s) 267, 386
BsiSI CCGG 7 cut(s) 18, 64, 78, 92, 111, 133, 318
BslFI GGGAC 2 cut(s) 127, 267
BslI CCNNNNNNNGG 3 cut(s) 17, 171, 476
BsmFI GGGAC 2 cut(s) 127, 267
BsnI GGCC 2 cut(s) 371, 481
Bsp119I TTCGAA 1 cut(s) 433
Bsp1286I GDGCHC 3 cut(s) 139, 267, 386
Bsp1407I TGTACA 1 cut(s) 83
Bsp143I GATC 4 cut(s) 42, 183, 406, 490
Bsp68I TCGCGA 1 cut(s) 489
BspACI CCGC 4 cut(s) 120, 187, 241, 255
BspANI GGCC 2 cut(s) 371, 481
BspDI ATCGAT 2 cut(s) 41, 295
BspFNI CGCG 2 cut(s) 189, 489
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 3 cut(s) 178, 401, 485
BspT104I TTCGAA 1 cut(s) 433
BsrBI CCGCTC 1 cut(s) 122
BsrFI RCCGGY 2 cut(s) 77, 317
BsrGI TGTACA 1 cut(s) 83
BssAI RCCGGY 2 cut(s) 77, 317
BssECI CCNNGG 2 cut(s) 25, 170
BssMI GATC 4 cut(s) 42, 183, 406, 490
BssT1I CCWWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 359
BstAUI TGTACA 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 170
BstFNI CGCG 2 cut(s) 189, 489
BstKTI GATC 4 cut(s) 45, 186, 409, 493
BstMBI GATC 4 cut(s) 42, 183, 406, 490
BstMCI CGRYCG 2 cut(s) 45, 245
BstMWI GCNNNNNNNGC 4 cut(s) 27, 66, 359, 368
BstNSI RCATGY 3 cut(s) 90, 252, 506
BstSCI CCNGG 3 cut(s) 91, 110, 132
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 2 cut(s) 189, 489
Bsu15I ATCGAT 2 cut(s) 41, 295
BsuRI GGCC 2 cut(s) 371, 481
BsuTUI ATCGAT 2 cut(s) 41, 295
BtgI CCRYGG 1 cut(s) 170
BtrI CACGTC 1 cut(s) 140
BtsI GCAGTG 2 cut(s) 348, 384
BtsIMutI CAGTG 2 cut(s) 348, 384
BtuMI TCGCGA 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 504
Cfr10I RCCGGY 2 cut(s) 77, 317
Cfr13I GGNCC 2 cut(s) 95, 479
ClaI ATCGAT 2 cut(s) 41, 295
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 84, 108
CspAI ACCGGT 2 cut(s) 77, 317
CviAII CATG 3 cut(s) 87, 249, 503
CviQI GTAC 2 cut(s) 84, 108
DdeI CTNAG 1 cut(s) 378
DpnI GATC 4 cut(s) 44, 185, 408, 492
DpnII GATC 4 cut(s) 42, 183, 406, 490
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 3 cut(s) 90, 252, 506
FaiI YATR 4 cut(s) 88, 250, 338, 504
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FaqI GGGAC 2 cut(s) 127, 267
FatI CATG 3 cut(s) 86, 248, 502
FblI GTMKAC 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 267
FspBI CTAG 1 cut(s) 26
GsaI CCCAGC 1 cut(s) 14
HaeIII GGCC 2 cut(s) 371, 481
HapII CCGG 7 cut(s) 18, 64, 78, 92, 111, 133, 318
HgaI GACGC 1 cut(s) 178
Hin1II CATG 3 cut(s) 90, 252, 506
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 3 cut(s) 38, 297, 466
HpaII CCGG 7 cut(s) 18, 64, 78, 92, 111, 133, 318
HphI GGTGA 3 cut(s) 307, 332, 475
Hpy166II GTNNAC 2 cut(s) 174, 246
Hpy188I TCNGA 4 cut(s) 235, 304, 400, 471
Hpy188III TCNNGA 1 cut(s) 488
Hpy8I GTNNAC 2 cut(s) 174, 246
Hpy99I CGWCG 7 cut(s) 38, 50, 144, 157, 181, 194, 215
HpyAV CCTTC 4 cut(s) 338, 382, 470, 504
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 2 cut(s) 139, 179
HpyCH4V TGCA 2 cut(s) 252, 353
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 66, 359, 368
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 2 cut(s) 139, 179
Hsp92II CATG 3 cut(s) 90, 252, 506
Kzo9I GATC 4 cut(s) 42, 183, 406, 490
LmnI GCTCC 4 cut(s) 66, 127, 270, 304
LpnPI CCDG 8 cut(s) 24, 31, 77, 91, 105, 124, 146, 331
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 139, 179
MaeIII GTNAC 2 cut(s) 313, 463
MalI GATC 4 cut(s) 44, 185, 408, 492
MbiI CCGCTC 1 cut(s) 122
MboI GATC 4 cut(s) 42, 183, 406, 490
MboII GAAGA 1 cut(s) 416
MhlI GDGCHC 3 cut(s) 139, 267, 386
MluCI AATT 1 cut(s) 339
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 7 cut(s) 25, 135, 138, 172, 175, 288, 406
MroXI GAANNNNTTC 1 cut(s) 327
MspI CCGG 7 cut(s) 18, 64, 78, 92, 111, 133, 318
MspR9I CCNGG 3 cut(s) 93, 112, 134
MvnI CGCG 2 cut(s) 189, 489
MwoI GCNNNNNNNGC 4 cut(s) 27, 66, 359, 368
NciI CCSGG 3 cut(s) 93, 112, 134
NdeII GATC 4 cut(s) 42, 183, 406, 490
NlaIII CATG 3 cut(s) 90, 252, 506
NlaIV GGNNCC 1 cut(s) 96
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 2 cut(s) 313, 463
NruI TCGCGA 1 cut(s) 489
NspI RCATGY 3 cut(s) 90, 252, 506
NspV TTCGAA 1 cut(s) 433
PaeI GCATGC 1 cut(s) 506
PciI ACATGT 1 cut(s) 86
PcsI WCGNNNNNNNCGW 4 cut(s) 42, 136, 173, 467
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 2 cut(s) 38, 297
PinAI ACCGGT 2 cut(s) 77, 317
Ple19I CGATCG 1 cut(s) 45
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PscI ACATGT 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 95, 479
PvuI CGATCG 1 cut(s) 45
RruI TCGCGA 1 cut(s) 489
RsaI GTAC 2 cut(s) 85, 109
RsaNI GTAC 2 cut(s) 84, 108
SacI GAGCTC 1 cut(s) 267
SalI GTCGAC 1 cut(s) 244
Sau3AI GATC 4 cut(s) 42, 183, 406, 490
Sau96I GGNCC 2 cut(s) 95, 479
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 93, 112, 134
SduI GDGCHC 3 cut(s) 139, 267, 386
SfaNI GCATC 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 433
SgrAI CRCCGGYG 1 cut(s) 317
SinI GGWCC 1 cut(s) 95
SphI GCATGC 1 cut(s) 506
Sse9I AATT 1 cut(s) 339
SsiI CCGC 4 cut(s) 120, 187, 241, 255
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 3 cut(s) 91, 110, 132
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 2 cut(s) 142, 182
TaqI TCGA 8 cut(s) 33, 41, 48, 192, 213, 245, 295, 433
TasI AATT 1 cut(s) 339
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 2 cut(s) 38, 297
TscAI CASTG 2 cut(s) 355, 391
TseFI GTSAC 2 cut(s) 313, 463
Tsp45I GTSAC 2 cut(s) 313, 463
TspDTI ATGAA 3 cut(s) 320, 334, 489
TspGWI ACGGA 2 cut(s) 45, 467
TspRI CASTG 2 cut(s) 355, 391
VpaK11BI GGWCC 1 cut(s) 95
XceI RCATGY 3 cut(s) 90, 252, 506
XmaJI CCTAGG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.