Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Reverse (-)

63795269 .. 63800538

Gene Structure 5270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCGCCGTTCAGACGAGGTGCACGTCACAAACGCCATTCTCGGCGGAGGACTCACATGTCAACACCACCAAGCTTCGGGACAGGTCTTCTGGGAGGACCTTCCTCCCCCGGTCGTCCTCCTTCTCCGCCGCCGTAGCGCTGGTCGAAACGACGTCGCCGTCCTCCTCCTCCTCCTCTCTAGGCACCTCCACATTGACGATGCTATCAAACAAGCTATCCGACAGGGGAATTCTCGATGTGGACTAAATCCTCGGTCGAATTCGGGTCGGGCACAGTCTATGATTCAGGGTCCATCGTGCGCCGTAGCCGGTCGGAAACGCCGGTGGTGGCAGATGCAGCCCTCGGGTAGAGCGGTGGAGATCGGTCTTATCGAAGTTGATGATGACCTCCTCGACGAAGTCGTGAGTCGGACTGAAGTGACCTCTCTCCGGGAGCAACAACAACGACTTAGTGTCGTCGATGAGGCAGGGAGCGACGTCGAGAATCGCCTCCAGTTAGCAGGACTTTGTGAACTCACAACATATCAGAAGATTGGACCTTTGTTCACGTTATTGGAAGCCGACACCTTGTGGGGCCATTTTGAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.87

Weight (kDa)

6.38

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	57, 158
AatII	GACGTC	2 cut(s)	156, 480
AccB1I	GGYRCC	1 cut(s)	183
AccBSI	CCGCTC	1 cut(s)	353
AciI	CCGC	4 cut(s)	45, 127, 130, 353
AcsI	RAATTY	2 cut(s)	229, 259
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	2 cut(s)	153, 477
AdeI	CACNNNGTG	1 cut(s)	570
AfeI	AGCGCT	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	76, 429
AflIII	ACRYGT	1 cut(s)	56
AhdI	GACNNNNNGTC	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	25
AluBI	AGCT	2 cut(s)	74, 215
AluI	AGCT	2 cut(s)	74, 215
Alw21I	GWGCWC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	343
Aor51HI	AGCGCT	1 cut(s)	139
AoxI	GGCC	1 cut(s)	574
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	2 cut(s)	229, 259
AspLEI	GCGC	3 cut(s)	6, 140, 302
AspS9I	GGNCC	4 cut(s)	97, 290, 536, 574
AsuC2I	CCSGG	2 cut(s)	110, 431
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	3 cut(s)	97, 290, 536
BaeGI	GKGCMC	2 cut(s)	24, 274
BanI	GGYRCC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	3 cut(s)	117, 143, 287
BcnI	CCSGG	2 cut(s)	110, 431
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	2 cut(s)	130, 338
BlsI	GCNGC	2 cut(s)	131, 339
Bme1390I	CCNGG	2 cut(s)	110, 431
Bme18I	GGWCC	3 cut(s)	97, 290, 536
BmeRI	GACNNNNNGTC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	343
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	4 cut(s)	97, 290, 536, 574
BmiI	GGNNCC	3 cut(s)	185, 291, 575
BmrFI	CCNGG	2 cut(s)	110, 431
BmsI	GCATC	2 cut(s)	190, 324
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	476
BpuMI	CCSGG	2 cut(s)	110, 431
BsaHI	GRCGYC	2 cut(s)	153, 477
BsaJI	CCNNGG	3 cut(s)	108, 251, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 429
Bse118I	RCCGGY	2 cut(s)	308, 321
Bse1I	ACTGG	1 cut(s)	493
BseDI	CCNNGG	3 cut(s)	108, 251, 342
BseLI	CCNNNNNNNGG	2 cut(s)	76, 429
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	5 cut(s)	155, 158, 161, 164, 380
BseSI	GKGCMC	2 cut(s)	24, 274
BseXI	GCAGC	1 cut(s)	349
Bsh1285I	CGRYCG	3 cut(s)	114, 257, 313
BshFI	GGCC	1 cut(s)	576
BshNI	GGYRCC	1 cut(s)	183
BsiEI	CGRYCG	3 cut(s)	114, 257, 313
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	4 cut(s)	110, 309, 322, 430
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	76, 429
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	576
BsoBI	CYCGRG	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	24, 274
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	4 cut(s)	45, 127, 130, 353
BspANI	GGCC	1 cut(s)	576
BspLI	GGNNCC	3 cut(s)	185, 291, 575
BspT107I	GGYRCC	1 cut(s)	183
BsrBI	CCGCTC	1 cut(s)	353
BsrFI	RCCGGY	2 cut(s)	308, 321
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	2 cut(s)	308, 321
BssECI	CCNNGG	3 cut(s)	108, 251, 342
BssMI	GATC	1 cut(s)	360
BssNI	GRCGYC	2 cut(s)	153, 477
Bst4CI	ACNGT	1 cut(s)	276
BstACI	GRCGYC	2 cut(s)	153, 477
BstDEI	CTNAG	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	6, 140, 302
BstKTI	GATC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	360
BstMCI	CGRYCG	3 cut(s)	114, 257, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 337
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	108, 429
BstSLI	GKGCMC	2 cut(s)	24, 274
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	576
BtrI	CACGTC	1 cut(s)	25
CfoI	GCGC	3 cut(s)	6, 140, 302
Cfr10I	RCCGGY	2 cut(s)	308, 321
Cfr13I	GGNCC	4 cut(s)	97, 290, 536, 574
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	6 cut(s)	74, 215, 308, 340, 560, 576
CviKI_1	RGCY	6 cut(s)	74, 215, 308, 340, 560, 576
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
DraIII	CACNNNGTG	1 cut(s)	570
DrdI	GACNNNNNNGTC	2 cut(s)	57, 158
DriI	GACNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	2 cut(s)	57, 158
Eam1105I	GACNNNNNGTC	1 cut(s)	452
EciI	GGCGGA	2 cut(s)	60, 116
Eco47I	GGWCC	3 cut(s)	97, 290, 536
Eco47III	AGCGCT	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRI	GAATTC	2 cut(s)	229, 259
FaeI	CATG	1 cut(s)	60
FaiI	YATR	3 cut(s)	58, 281, 523
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	130, 338
Fsp4HI	GCNGC	2 cut(s)	130, 338
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	3 cut(s)	5, 139, 301
GluI	GCNGC	2 cut(s)	130, 338
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	576
HapII	CCGG	4 cut(s)	110, 309, 322, 430
HhaI	GCGC	3 cut(s)	6, 140, 302
Hin1I	GRCGYC	2 cut(s)	153, 477
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	3 cut(s)	4, 138, 300
HinP1I	GCGC	3 cut(s)	4, 138, 300
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	4 cut(s)	51, 283, 406, 484
HpaII	CCGG	4 cut(s)	110, 309, 322, 430
Hpy166II	GTNNAC	5 cut(s)	22, 62, 242, 512, 546
Hpy188I	TCNGA	5 cut(s)	13, 221, 315, 411, 528
Hpy188III	TCNNGA	4 cut(s)	78, 234, 403, 481
Hpy8I	GTNNAC	5 cut(s)	22, 62, 242, 512, 546
Hpy99I	CGWCG	6 cut(s)	155, 158, 398, 461, 479, 482
HpyAV	CCTTC	2 cut(s)	110, 131
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	4 cut(s)	24, 153, 477, 548
HpyCH4V	TGCA	2 cut(s)	22, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 337
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	4 cut(s)	24, 153, 477, 548
Hsp92I	GRCGYC	2 cut(s)	153, 477
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	3 cut(s)	4, 138, 300
Kzo9I	GATC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	433, 471
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	2 cut(s)	190, 324
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	4 cut(s)	24, 153, 477, 548
MaeIII	GTNAC	2 cut(s)	25, 418
MalI	GATC	1 cut(s)	362
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	1 cut(s)	360
MboII	GAAGA	2 cut(s)	79, 541
MhlI	GDGCHC	2 cut(s)	24, 274
MluCI	AATT	2 cut(s)	229, 259
MlyI	GAGTC	2 cut(s)	45, 415
MmeI	TCCRAC	3 cut(s)	244, 293, 389
MseI	TTAA	1 cut(s)	589
MspI	CCGG	4 cut(s)	110, 309, 322, 430
MspR9I	CCNGG	2 cut(s)	110, 431
MwoI	GCNNNNNNNGC	2 cut(s)	135, 337
NciI	CCSGG	2 cut(s)	110, 431
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	1 cut(s)	60
NlaIV	GGNNCC	3 cut(s)	185, 291, 575
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	25, 418
NspI	RCATGY	1 cut(s)	60
PciI	ACATGT	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	4 cut(s)	21, 156, 369, 399
PfeI	GAWTC	2 cut(s)	283, 484
PflFI	GACNNNGTC	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	2 cut(s)	131, 339
PleI	GAGTC	2 cut(s)	45, 414
PpsI	GAGTC	2 cut(s)	45, 414
PpuMI	RGGWCCY	1 cut(s)	97
PscI	ACATGT	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	185, 291, 575
PspPI	GGNCC	4 cut(s)	97, 290, 536, 574
PspPPI	RGGWCCY	1 cut(s)	97
PsyI	GACNNNGTC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	589
SatI	GCNGC	2 cut(s)	130, 338
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	4 cut(s)	97, 290, 536, 574
SchI	GAGTC	2 cut(s)	45, 415
ScrFI	CCNGG	2 cut(s)	110, 431
SduI	GDGCHC	2 cut(s)	24, 274
SfaNI	GCATC	2 cut(s)	190, 324
SgrAI	CRCCGGYG	1 cut(s)	321
SinI	GGWCC	3 cut(s)	97, 290, 536
Sse9I	AATT	2 cut(s)	229, 259
SsiI	CCGC	4 cut(s)	45, 127, 130, 353
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	108, 429
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	4 cut(s)	27, 156, 480, 551
TaqI	TCGA	7 cut(s)	145, 235, 257, 372, 393, 459, 480
TaqII	GACCGA	2 cut(s)	243, 353
TasI	AATT	2 cut(s)	229, 259
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	283, 484
Tru1I	TTAA	1 cut(s)	589
Tru9I	TTAA	1 cut(s)	589
TseFI	GTSAC	2 cut(s)	25, 418
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	25, 418
Tth111I	GACNNNGTC	1 cut(s)	398
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	97, 290, 536
XapI	RAATTY	2 cut(s)	229, 259
XceI	RCATGY	1 cut(s)	60
XspI	CTAG	1 cut(s)	180
ZraI	GACGTC	2 cut(s)	154, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.