Rroxscaffold_1G00009080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002289
Physical Location & Seq
Forward (+)
11426670 .. 11431186
4517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009080.1

Sequence Viewer

Length: 249 bp
ATGAAAAGCAATGAACAAGATCCCAAAAGCCTCACCTCTTTCGGTGGCCGCCTCTCTCTTCATCCCCACCGAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATCCCCATGGCTTCTTCAATTCACTACGATATTCGCTGCGTGCTTCTTCTTCACTTGGCCACGTCATCGTTATCGTCATCATCGTCACCTTCGACGTCGTTCCGCTTCGAGTTTTCTGCAATGACGAAGCGAAAGGGGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.92

Weight (kDa)

10.17

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 203
AciI CCGC 2 cut(s) 49, 208
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 2 cut(s) 46, 162
AcyI GRCGYC 1 cut(s) 200
AgsI TTSAA 1 cut(s) 123
AjiI CACGTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 14
AoxI GGCC 3 cut(s) 46, 162, 242
ApeKI GCWGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 25, 183
BalI TGGCCA 1 cut(s) 164
BbvI GCAGC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BisI GCNGC 2 cut(s) 49, 142
BlsI GCNGC 2 cut(s) 50, 143
BmgBI CACGTC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 111
Bse3DI GCAATG 2 cut(s) 16, 231
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 61
BseMI GCAATG 2 cut(s) 16, 231
BseXI GCAGC 1 cut(s) 128
BshFI GGCC 3 cut(s) 48, 164, 244
BsnI GGCC 3 cut(s) 48, 164, 244
Bsp143I GATC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 2 cut(s) 49, 208
BspANI GGCC 3 cut(s) 48, 164, 244
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 16, 231
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 19
BssNI GRCGYC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 3 cut(s) 48, 164, 244
BtgI CCRYGG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 242
CviAII CATG 1 cut(s) 112
CviJI RGCY 6 cut(s) 30, 48, 74, 116, 164, 244
CviKI_1 RGCY 6 cut(s) 30, 48, 74, 116, 164, 244
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EaeI YGGCCR 2 cut(s) 46, 162
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 49, 142
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 49, 142
GluI GCNGC 2 cut(s) 49, 142
HaeIII GGCC 3 cut(s) 48, 164, 244
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 1 cut(s) 115
HphI GGTGA 2 cut(s) 25, 183
Hpy99I CGWCG 2 cut(s) 202, 205
HpyAV CCTTC 1 cut(s) 204
HpyCH4IV ACGT 2 cut(s) 167, 200
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpySE526I ACGT 2 cut(s) 167, 200
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 1 cut(s) 19
Lsp1109I GCAGC 1 cut(s) 128
MaeII ACGT 2 cut(s) 167, 200
MaeIII GTNAC 1 cut(s) 189
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 4 cut(s) 50, 111, 143, 146
MflI RGATCY 1 cut(s) 19
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 1 cut(s) 123
MluNI TGGCCA 1 cut(s) 164
MnlI CCTC 4 cut(s) 41, 46, 62, 85
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 241
NcoI CCATGG 1 cut(s) 111
NdeII GATC 1 cut(s) 19
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 2 cut(s) 185, 194
PkrI GCNGC 2 cut(s) 50, 143
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 1 cut(s) 19
SatI GCNGC 2 cut(s) 49, 142
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 242
SetI ASST 4 cut(s) 38, 170, 196, 203
SgeI CNNG 7 cut(s) 29, 83, 124, 157, 172, 178, 226
Sse9I AATT 1 cut(s) 123
SsiI CCGC 2 cut(s) 49, 208
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 2 cut(s) 170, 203
TaqI TCGA 2 cut(s) 197, 213
TasI AATT 1 cut(s) 123
TauI GCSGC 1 cut(s) 51
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 3 cut(s) 17, 27, 50
ZraI GACGTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.