Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Forward (+)

46503847 .. 46507324

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTTCTTCAATTCACTATGATATTCGCTGCGTGCTTCTTCTTCACTTGGCCACGTCATCTTTATCGTCATCATCGTCGCCTTCGACGTTGTTCCGCGTCAGAACTTTCTCCAATGACGAAGCAAAAGAGGCCGTGAAGCTTCCCGAGAAGCCGTCGATATGCACCGCCGACGAGCTCCACTACGTCTCCGTGCCCAACTCCGATTGGAGGCACGCCCTCTGGCGCTACCTCCTTTGCCCCACGGCTGCTGCATTCCTTTCGTTGGGTATAGCTGCTACAAGGTGCTGCGTTCTTTTCTCTTCTTCTCTCAGAGTCTCAGAGATCGAAGGCTTCTACTCTTCATCTTCAATTTGGGGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4

Protein Analysis

121

Amino Acids

13.33

Weight (kDa)

6.88

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	97, 168
AcoI	YGGCCR	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	210, 265
AgsI	TTSAA	2 cut(s)	12, 351
AjiI	CACGTC	1 cut(s)	57
AluBI	AGCT	3 cut(s)	142, 178, 275
AluI	AGCT	3 cut(s)	142, 178, 275
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	193, 322
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	51, 132
ApeKI	GCWGC	5 cut(s)	30, 248, 251, 275, 288
AspLEI	GCGC	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	5 cut(s)	17, 235, 238, 262, 275
BceAI	ACGGC	3 cut(s)	119, 139, 261
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BcoDI	GTCTC	2 cut(s)	193, 322
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	5 cut(s)	31, 249, 252, 276, 289
BlsI	GCNGC	5 cut(s)	32, 250, 253, 277, 290
BmeT110I	CYCGRG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 265
BseDI	CCNNGG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	210, 265
BseMII	CTCAG	2 cut(s)	325, 333
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	5 cut(s)	17, 235, 238, 262, 275
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	53, 134
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	210, 265
BsmAI	GTCTC	2 cut(s)	193, 322
BsmBI	CGTCTC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	53, 134
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	180, 198
Bsp143I	GATC	1 cut(s)	324
BspACI	CCGC	2 cut(s)	97, 168
BspANI	GGCC	2 cut(s)	53, 134
BspCNI	CTCAG	2 cut(s)	324, 332
BspFNI	CGCG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	324
Bst6I	CTCTTC	2 cut(s)	307, 346
BstC8I	GCNNGC	2 cut(s)	35, 216
BstDEI	CTNAG	2 cut(s)	311, 319
BstDSI	CCRYGG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	2 cut(s)	193, 322
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	198
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	5 cut(s)	17, 235, 238, 262, 275
BsuRI	GGCC	2 cut(s)	53, 134
BtgI	CCRYGG	1 cut(s)	243
BtrI	CACGTC	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	35, 216
CfoI	GCGC	1 cut(s)	228
CseI	GACGC	1 cut(s)	88
CviJI	RGCY	9 cut(s)	5, 53, 134, 142, 154, 178, 248, 275, 333
CviKI_1	RGCY	9 cut(s)	5, 53, 134, 142, 154, 178, 248, 275, 333
DdeI	CTNAG	2 cut(s)	311, 319
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	307, 346
EarI	CTCTTC	2 cut(s)	307, 346
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	193
FaiI	YATR	3 cut(s)	21, 163, 272
Fnu4HI	GCNGC	5 cut(s)	31, 249, 252, 276, 289
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	5 cut(s)	31, 249, 252, 276, 289
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	5 cut(s)	31, 249, 252, 276, 289
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	53, 134
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	228
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	1 cut(s)	315
Hpy188I	TCNGA	4 cut(s)	104, 205, 314, 322
Hpy188III	TCNNGA	1 cut(s)	146
Hpy99I	CGWCG	4 cut(s)	82, 91, 160, 176
HpyAV	CCTTC	2 cut(s)	93, 323
HpyCH4IV	ACGT	3 cut(s)	56, 89, 186
HpyCH4V	TGCA	2 cut(s)	165, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	311, 319
HpySE526I	ACGT	3 cut(s)	56, 89, 186
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	1 cut(s)	208
Lsp1109I	GCAGC	5 cut(s)	17, 235, 238, 262, 275
MaeII	ACGT	3 cut(s)	56, 89, 186
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	6 cut(s)	32, 35, 294, 297, 333, 339
MhlI	GDGCHC	2 cut(s)	180, 198
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	12, 351
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	4 cut(s)	124, 204, 230, 242
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	254
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	3 cut(s)	74, 83, 86
PctI	GAATGC	1 cut(s)	254
PkrI	GCNGC	5 cut(s)	32, 250, 253, 277, 290
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	180
SatI	GCNGC	5 cut(s)	31, 249, 252, 276, 289
Sau3AI	GATC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	324
SduI	GDGCHC	2 cut(s)	180, 198
SetI	ASST	8 cut(s)	59, 92, 144, 180, 189, 234, 277, 287
Sse9I	AATT	2 cut(s)	12, 351
SsiI	CCGC	2 cut(s)	97, 168
SstI	GAGCTC	1 cut(s)	180
TaiI	ACGT	3 cut(s)	59, 92, 189
TaqI	TCGA	3 cut(s)	86, 158, 327
TasI	AATT	2 cut(s)	12, 351
TseI	GCWGC	5 cut(s)	30, 248, 251, 275, 288
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.