Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Forward (+)

15062850 .. 15065781

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0167700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAATGTCGAGCATTGCCATGATTTGAAGGAATTGCCTGCTGACCTTGGTAAACTTTCTCACCTAGAGATGCTCTATATCTCCAATTGCCATAGGTTAACCACCTTGCCTGAAGGGATTGGAAATCTGAGCAAGTTGAAAAGGTTGAGGGTTAGGGTGGTTCCTCTGCTTACAGTTGGATTTGATGTGGCTTTGGAGGAATTGAACAGGAAGGTACTTAAGGATGGGCTGTCCAGGCATGTCGAGTGTGGCATTGCACAAAATAAAATTCAAACCGAAAGTTGGTGTCCTGTACCTGAGCCTTCTTCGATCACTGTGGGATGTGATGTCCTGGATGTGTGGGGAGAAATGCAGATGGAGGAGACATTGATTTCAGAAGTCAGGGTCAAGCGAACTGAAGGGAGTGGTGTGGTAAAAATTCAACTTGGAATTAAAGGGATATCCGGGAATCACAGCAGGAACAACATAGTTTCCAATGCGAGCAGCAGTGGGAGGAAGTCAATTGTTGAAGGCAGCAGAGAGATGAGTCGCAGACTGATGAGCAAAGTTTGGAGACGGTTGGGTGATGAGAAGACGCTTGCACATTCTAAGTTTGGCTCTGGAATGCCTATTGCTGTCAAGAAACTGAATCCAGAAGAAGTGCTAGATTTTGAAGAGTGGCAGAATTTTCATTTCTATGAAGGGAGCCCTGGCATTGAAACACTACCTTGGAACTACAGACTCGATATAGCTTCTGGAGTAGCTCAAGATCTAGCCTATTTACACAGTTCTGGGGAACAAATAATCCATAGAGACTTGAAAGTCAGTAATATTTTTCTTGAAGCTTCCAATATCTTACTTGATGGGGTAAGTTCTCAAGCCCCAAAATACATGCTTGATGAGATTCACAATGGAAGCATATTCTCGGATTATGAGTTGGTGCCCCATGCAAGCTTGGAAAATCACCTTTTTGAAATAGGGAGCCCTGGCATGGAACCCCTATCTTGGAACAAAAGACTGGATATAGCTTCTGGTGTAGCTCAAGCCCTAGCCTACTTGCACACTTTTTCACCGAATCAATTTGTCCACAGTGACCTTAAGGCCTCCAATATCTTGCTTGATGGGAATTACAATGCCAAACTCTCAAATTTTGGATTAGAAAGACTTGGGAAAACTGGTGAACTGTCACATCAGTCAACTCGCTCTTTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

397

Amino Acids

44.26

Weight (kDa)

6.16

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	8 - 71	4.6e-07	Leucine-rich repeat region
PK_Tyr_Ser-Thr	PF07714	304 - 387	1.7e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	326 - 387	3.8e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	800
AccB1I	GGYRCC	1 cut(s)	919
AcsI	RAATTY	4 cut(s)	267, 417, 664, 1126
AcuI	CTGAAG	2 cut(s)	132, 417
AfaI	GTAC	2 cut(s)	216, 294
AfiI	CCNNNNNNNGG	3 cut(s)	282, 970, 984
AflII	CTTAAG	2 cut(s)	218, 1076
AjnI	CCWGG	4 cut(s)	233, 330, 688, 964
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
AluBI	AGCT	6 cut(s)	731, 743, 824, 933, 1007, 1019
AluI	AGCT	6 cut(s)	731, 743, 824, 933, 1007, 1019
Alw26I	GTCTC	3 cut(s)	356, 547, 786
AoxI	GGCC	1 cut(s)	1080
ApeKI	GCWGC	2 cut(s)	483, 513
ApoI	RAATTY	4 cut(s)	267, 417, 664, 1126
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	5 cut(s)	53, 575, 935, 1041, 1169
BaeGI	GKGCMC	1 cut(s)	924
BanI	GGYRCC	1 cut(s)	919
BanII	GRGCYC	2 cut(s)	689, 965
BbsI	GAAGAC	1 cut(s)	578
BbvI	GCAGC	2 cut(s)	495, 525
BccI	CCATC	4 cut(s)	218, 349, 836, 1094
BciT130I	CCWGG	4 cut(s)	235, 332, 690, 966
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	356, 547, 786
BfaI	CTAG	4 cut(s)	65, 644, 752, 1028
BfmI	CTRYAG	1 cut(s)	715
BfrI	CTTAAG	2 cut(s)	218, 1076
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	2 cut(s)	484, 514
BlsI	GCNGC	2 cut(s)	485, 515
Bme1390I	CCNGG	5 cut(s)	235, 332, 445, 690, 966
BmiI	GGNNCC	5 cut(s)	162, 686, 921, 962, 975
BmrFI	CCNGG	5 cut(s)	235, 332, 445, 690, 966
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	756
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	3 cut(s)	729, 840, 1005
BpuMI	CCSGG	1 cut(s)	445
BsaJI	CCNNGG	4 cut(s)	46, 688, 707, 964
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 970, 984
Bse1I	ACTGG	2 cut(s)	1002, 1159
Bse3DI	GCAATG	2 cut(s)	13, 252
BseBI	CCWGG	4 cut(s)	235, 332, 690, 966
BseDI	CCNNGG	4 cut(s)	46, 688, 707, 964
BseGI	GGATG	3 cut(s)	229, 326, 340
BseLI	CCNNNNNNNGG	3 cut(s)	282, 970, 984
BseMI	GCAATG	2 cut(s)	13, 252
BseMII	CTCAG	2 cut(s)	119, 288
BseNI	ACTGG	2 cut(s)	1002, 1159
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	924
BseXI	GCAGC	2 cut(s)	495, 525
BshFI	GGCC	1 cut(s)	1082
BshNI	GGYRCC	1 cut(s)	919
BsiSI	CCGG	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	282, 970, 984
BsmAI	GTCTC	3 cut(s)	356, 547, 786
BsmBI	CGTCTC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	1082
Bsp1286I	GDGCHC	3 cut(s)	689, 924, 965
Bsp143I	GATC	2 cut(s)	309, 748
BspANI	GGCC	1 cut(s)	1082
BspCNI	CTCAG	2 cut(s)	120, 289
BspLI	GGNNCC	5 cut(s)	162, 686, 921, 962, 975
BspT107I	GGYRCC	1 cut(s)	919
BspTI	CTTAAG	2 cut(s)	218, 1076
BsrDI	GCAATG	2 cut(s)	13, 252
BsrI	ACTGG	2 cut(s)	1002, 1159
BssECI	CCNNGG	4 cut(s)	46, 688, 707, 964
BssMI	GATC	2 cut(s)	309, 748
BssT1I	CCWWGG	2 cut(s)	46, 707
Bst2UI	CCWGG	4 cut(s)	235, 332, 690, 966
Bst4CI	ACNGT	6 cut(s)	175, 316, 558, 767, 1070, 1164
Bst6I	CTCTTC	1 cut(s)	648
BstAFI	CTTAAG	2 cut(s)	218, 1076
BstC8I	GCNNGC	4 cut(s)	39, 481, 579, 931
BstDEI	CTNAG	3 cut(s)	128, 297, 588
BstF5I	GGATG	3 cut(s)	229, 326, 340
BstKTI	GATC	2 cut(s)	312, 751
BstMAI	GTCTC	3 cut(s)	356, 547, 786
BstMBI	GATC	2 cut(s)	309, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	4 cut(s)	235, 332, 690, 966
BstNSI	RCATGY	2 cut(s)	242, 874
BstSCI	CCNGG	5 cut(s)	233, 330, 443, 688, 964
BstSFI	CTRYAG	1 cut(s)	715
BstSLI	GKGCMC	1 cut(s)	924
BstV1I	GCAGC	2 cut(s)	495, 525
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	1 cut(s)	1082
BtsCI	GGATG	3 cut(s)	229, 326, 340
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	3 cut(s)	312, 493, 1075
Cac8I	GCNNGC	4 cut(s)	39, 481, 579, 931
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	215, 293
CviAII	CATG	5 cut(s)	20, 239, 871, 926, 970
CviQI	GTAC	2 cut(s)	215, 293
DdeI	CTNAG	3 cut(s)	128, 297, 588
DpnI	GATC	2 cut(s)	311, 750
DpnII	GATC	2 cut(s)	309, 748
DrdI	GACNNNNNNGTC	1 cut(s)	800
DseDI	GACNNNNNNGTC	1 cut(s)	800
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco130I	CCWWGG	2 cut(s)	46, 707
Eco147I	AGGCCT	1 cut(s)	1082
Eco24I	GRGCYC	2 cut(s)	689, 965
Eco32I	GATATC	1 cut(s)	441
Eco57I	CTGAAG	2 cut(s)	132, 417
EcoRII	CCWGG	4 cut(s)	233, 330, 688, 964
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	46, 707
EcoT38I	GRGCYC	2 cut(s)	689, 965
ErhI	CCWWGG	2 cut(s)	46, 707
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	5 cut(s)	23, 242, 874, 929, 973
FatI	CATG	5 cut(s)	19, 238, 870, 925, 969
Fnu4HI	GCNGC	2 cut(s)	484, 514
FokI	GGATG	3 cut(s)	236, 333, 347
FriOI	GRGCYC	2 cut(s)	689, 965
Fsp4HI	GCNGC	2 cut(s)	484, 514
FspBI	CTAG	4 cut(s)	65, 644, 752, 1028
GluI	GCNGC	2 cut(s)	484, 514
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	1 cut(s)	1082
HapII	CCGG	1 cut(s)	444
HgaI	GACGC	1 cut(s)	583
Hin1II	CATG	5 cut(s)	23, 242, 874, 929, 973
HincII	GTYRAC	2 cut(s)	99, 1176
HindII	GTYRAC	2 cut(s)	99, 1176
HindIII	AAGCTT	2 cut(s)	822, 931
HinfI	GANTC	6 cut(s)	448, 526, 628, 720, 883, 1054
HpaI	GTTAAC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	5 cut(s)	53, 575, 935, 1041, 1169
Hpy166II	GTNNAC	5 cut(s)	53, 99, 1066, 1160, 1176
Hpy188I	TCNGA	3 cut(s)	129, 376, 907
Hpy188III	TCNNGA	6 cut(s)	600, 619, 632, 735, 746, 818
Hpy8I	GTNNAC	5 cut(s)	53, 99, 1066, 1160, 1176
HpyAV	CCTTC	7 cut(s)	22, 107, 205, 312, 392, 503, 674
HpyCH4III	ACNGT	6 cut(s)	175, 316, 558, 767, 1070, 1164
HpyCH4V	TGCA	5 cut(s)	257, 352, 581, 929, 1039
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	3 cut(s)	128, 297, 588
Hsp92II	CATG	5 cut(s)	23, 242, 874, 929, 973
KspAI	GTTAAC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	309, 748
LmnI	GCTCC	2 cut(s)	684, 960
Lsp1109I	GCAGC	2 cut(s)	495, 525
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	4 cut(s)	65, 644, 752, 1028
MaeIII	GTNAC	2 cut(s)	1070, 1164
MalI	GATC	2 cut(s)	311, 750
MboI	GATC	2 cut(s)	309, 748
MboII	GAAGA	4 cut(s)	297, 583, 647, 665
MfeI	CAATTG	2 cut(s)	85, 501
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	3 cut(s)	689, 924, 965
MlyI	GAGTC	2 cut(s)	535, 714
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	141, 174, 190, 352, 486, 1093
MseI	TTAA	4 cut(s)	98, 219, 432, 1077
MslI	CAYNNNNRTG	2 cut(s)	18, 675
MspCI	CTTAAG	2 cut(s)	218, 1076
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	5 cut(s)	235, 332, 445, 690, 966
MunI	CAATTG	2 cut(s)	85, 501
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	4 cut(s)	235, 332, 690, 966
MwoI	GCNNNNNNNGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	2 cut(s)	309, 748
NlaIII	CATG	5 cut(s)	23, 242, 874, 929, 973
NlaIV	GGNNCC	5 cut(s)	162, 686, 921, 962, 975
NmuCI	GTSAC	2 cut(s)	1070, 1164
NspI	RCATGY	2 cut(s)	242, 874
PceI	AGGCCT	1 cut(s)	1082
PctI	GAATGC	1 cut(s)	609
PfeI	GAWTC	4 cut(s)	448, 628, 883, 1054
PfoI	TCCNGGA	2 cut(s)	330, 443
PkrI	GCNGC	2 cut(s)	485, 515
PleI	GAGTC	2 cut(s)	534, 714
PpsI	GAGTC	2 cut(s)	534, 714
Psp6I	CCWGG	4 cut(s)	233, 330, 688, 964
PspGI	CCWGG	4 cut(s)	233, 330, 688, 964
PspN4I	GGNNCC	5 cut(s)	162, 686, 921, 962, 975
PsuI	RGATCY	1 cut(s)	748
RsaI	GTAC	2 cut(s)	216, 294
RsaNI	GTAC	2 cut(s)	215, 293
RseI	CAYNNNNRTG	2 cut(s)	18, 675
SaqAI	TTAA	4 cut(s)	98, 219, 432, 1077
SatI	GCNGC	2 cut(s)	484, 514
Sau3AI	GATC	2 cut(s)	309, 748
SchI	GAGTC	2 cut(s)	535, 714
ScrFI	CCNGG	5 cut(s)	235, 332, 445, 690, 966
SduI	GDGCHC	3 cut(s)	689, 924, 965
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	715
SmiMI	CAYNNNNRTG	2 cut(s)	18, 675
SmlI	CTYRAG	5 cut(s)	218, 744, 855, 1020, 1076
SmoI	CTYRAG	5 cut(s)	218, 744, 855, 1020, 1076
SseBI	AGGCCT	1 cut(s)	1082
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	4 cut(s)	65, 644, 752, 1028
StuI	AGGCCT	1 cut(s)	1082
StyD4I	CCNGG	5 cut(s)	233, 330, 443, 688, 964
StyI	CCWWGG	2 cut(s)	46, 707
TaaI	ACNGT	6 cut(s)	175, 316, 558, 767, 1070, 1164
TaqI	TCGA	4 cut(s)	9, 243, 308, 723
TfiI	GAWTC	4 cut(s)	448, 628, 883, 1054
Tru1I	TTAA	4 cut(s)	98, 219, 432, 1077
Tru9I	TTAA	4 cut(s)	98, 219, 432, 1077
TscAI	CASTG	3 cut(s)	319, 493, 1075
TseFI	GTSAC	2 cut(s)	1070, 1164
TseI	GCWGC	2 cut(s)	483, 513
Tsp45I	GTSAC	2 cut(s)	1070, 1164
TspDTI	ATGAA	3 cut(s)	17, 659, 693
TspRI	CASTG	3 cut(s)	319, 493, 1075
Vha464I	CTTAAG	2 cut(s)	218, 1076
XapI	RAATTY	4 cut(s)	267, 417, 664, 1126
XceI	RCATGY	2 cut(s)	242, 874
XspI	CTAG	4 cut(s)	65, 644, 752, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.