Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002289

Physical Location & Seq

Genomic Coordinates Reverse (-)

62505494 .. 62509909

Gene Structure 4416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG449000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCGTTCCGCGTCAGAGCTTTCTCCAATGACGAAGCGAGCGAAAGAGGCCATGAAGCTTCTGGAGAAGCCGTCGATATGCACCGCCGACGTGCTCCACTACGTCTCCGTGCCCAACACCGATTGAAGGCTCGCCCTCTTGTGATACCGCCTTTGCCCCACGGTGATGTGACATGTCTGGCTACCATTCCATCTGAGATGGAAGTAGAAGCCCACTTCTTGGCAAAGGAGAATTGTATAGTTGCTGGAATTGCACTTGCAGAGATGGTATTTTATGAAGTTGATCCCACTCTAAAGGTTGAGTGGTCACAAAAGGATGGAGATTCCGTACATAAAGGCTTAGAGTCTGGAAAAGTTTATGGAAACTCCGGAGTATCAGTAATCTTTCTTGTCGTAGTTGTTTATGGGGATTTTGCTATAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

142

Amino Acids

15.65

Weight (kDa)

5.84

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	56 - 119	6.5e-12	Quinolinate phosphoribosyl transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73740
fragaria_vesca	FvH4_5g16720 FvH4_5g16720 FvH4_5g16720
malus_domestica	MD06G1220900.v1.1 MD14G1230300.v1.1
prunus_persica	Prupe.5G225300_v2.0.a1 Prupe.5G225300_v2.0.a1
pyrus_communis	pycom06g19680 pycom14g19160
rosa_chinensis	RchiOBHm_Chr2g0147091 RchiOBHm_Chr4g0425761 RchiOBHm_Chr5g0055191 RchiOBHm_Chr7g0179381
rosa_laevigata	RLG00000005361 RLG00000020332
rosa_multiflora	Rmu_co8392303.1_g000001 Rmu_sc0001986.1_g000009 Rmu_sc0005157.1_g000016 Rmu_sc0016328.1_g000001 Rmu_sc0021620.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433370 Rroxscaffold_1G00009080 Rroxscaffold_2G00138060 Rroxscaffold_3G00274080 Rroxscaffold_4G00307130 Rroxscaffold_6G00394940 Rroxscaffold_6G00425500
rosa_rugosa	Rorug02G0167700 Rorug04G0276300 Rorug06G0423900
rosa_samantha	Rh4BG339500 Rh4CG354700 Rh4DG205700 Rh5CG449000 Rh6DG030500 Rh7AG023300 Rh7BG022900 Rh7CG024200 Rh7DG023700 Rh7DG284700
rosa_wichuraiana	Rw7G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	368
AciI	CCGC	3 cut(s)	10, 85, 149
AclWI	GGATC	1 cut(s)	278
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	127, 220
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	92
AluBI	AGCT	3 cut(s)	20, 59, 426
AluI	AGCT	3 cut(s)	20, 59, 426
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	278
Aor13HI	TCCGGA	1 cut(s)	368
AoxI	GGCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	4 cut(s)	193, 199, 259, 311
BceAI	ACGGC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	427
BfmI	CTRYAG	1 cut(s)	417
BmgBI	CACGTC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	8 cut(s)	57, 87, 90, 120, 312, 342, 363, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 220
BseAI	TCCGGA	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	127, 220
BseMII	CTCAG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	127, 220
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	97, 115
Bsp13I	TCCGGA	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	3 cut(s)	10, 85, 149
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	40, 133
BstDEI	CTNAG	2 cut(s)	195, 340
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 251
BstNSI	RCATGY	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	40, 133
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	2 cut(s)	53, 174
CviJI	RGCY	9 cut(s)	20, 51, 59, 71, 131, 182, 212, 339, 426
CviKI_1	RGCY	9 cut(s)	20, 51, 59, 71, 131, 182, 212, 339, 426
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	2 cut(s)	195, 340
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	2 cut(s)	56, 177
FaiI	YATR	9 cut(s)	54, 80, 175, 239, 276, 333, 360, 405, 419
FatI	CATG	2 cut(s)	52, 173
FokI	GGATG	1 cut(s)	329
FspBI	CTAG	1 cut(s)	427
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	2 cut(s)	56, 177
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	2 cut(s)	323, 344
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	17, 196
Hpy188III	TCNNGA	3 cut(s)	63, 348, 369
Hpy99I	CGWCG	2 cut(s)	77, 93
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	91, 103
HpyCH4V	TGCA	3 cut(s)	82, 254, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 251
HpyF3I	CTNAG	2 cut(s)	195, 340
HpySE526I	ACGT	2 cut(s)	91, 103
Hsp92II	CATG	2 cut(s)	56, 177
Kpn2I	TCCGGA	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	48, 164, 231, 333, 382
MaeI	CTAG	1 cut(s)	427
MaeII	ACGT	2 cut(s)	91, 103
MaeIII	GTNAC	2 cut(s)	169, 306
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	97, 115
MluCI	AATT	2 cut(s)	232, 249
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	2 cut(s)	41, 147
MroI	TCCGGA	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	48, 251
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	56, 177
NmuCI	GTSAC	2 cut(s)	169, 306
NspI	RCATGY	1 cut(s)	177
PciI	ACATGT	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	220
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PscI	ACATGT	1 cut(s)	173
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	353
SduI	GDGCHC	2 cut(s)	97, 115
SetI	ASST	6 cut(s)	22, 61, 94, 106, 300, 428
SfcI	CTRYAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	232, 249
SsiI	CCGC	3 cut(s)	10, 85, 149
SspMI	CTAG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	2 cut(s)	94, 106
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	232, 249
TfiI	GAWTC	1 cut(s)	323
TseFI	GTSAC	2 cut(s)	169, 306
Tsp45I	GTSAC	2 cut(s)	169, 306
TspDTI	ATGAA	2 cut(s)	69, 291
TspGWI	ACGGA	2 cut(s)	98, 316
Van91I	CCANNNNNTGG	1 cut(s)	220
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XspI	CTAG	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.