FvH4_5g16720

UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
9547689 .. 9550920
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16720.t1

Sequence Viewer

Length: 1287 bp
ATGGCGGCCTTCTCTCACCTCTCCTTCACTCCTTCACCCCCACCCACCAAACTCGGCACCTTGAACTTCAAGGTCACCTCTTGCCTCTCCCTAAAGCAATCAAATGACCAGACTCTCGCCTCCCAAAACGACGCCGTATTATTCGACAGCCTCCGTGTCGTCTTCGCCGCCGGTGGTACCGGAGGCCACATATACCCGGCCGTCGCCATAGCCGACGAGCTCAAAACCACCAACCCCAACGCCCAAATTCTGTTCTTCGGCATACCCAAAAGCATGGAAAGCAAGGCCATCCCCAACGCCGGCCACGACTTCGCCGCCGTCCCCGCCGCCAAGTTGCACCGCCCGGTTCTGTCACCCAGAAACGTCTTCCTACCCTATCACTTGATCAAGTCGATCATCTGGAGCTACTACAAATTACGGGAGTTTGATCCCCATATTGTGATCGGCACCGGCGGGTACGTATCGTTTCCGGTGGGCATTGCGGCGGCGCTGAGGGGAGTCAAGCTTGTGATTCAAGAACAGAATGCTGTTCCGGGGATAGCCAATTGGTTGCTCTCGTTTTTGGCTGAGGTTGTGTTTGTGGCGTTTAATTCTACTATTGATTGTTTCCCAAGTGCGAGTGGGAAGAAGTGTGTGGTGTGTGGGAACCCTGTGAGGTTGTCTTTGAGAAAGAATGTGTCTAAGGAGGCGGCGAGGGGGCGGTTTTTTCCAAAGTGCGGCAAGGAGGTGGAGGATGTGAAGGTGCTTTTGGTGCTTGGAGGGTCTTTAGGTGCTAATGCCATCAATATTGCTTTGTTGAATTTGTATTATCAGATGTTGTTGGAGAAGGAAGACTTGTTCATCATATGGCAGACTGGAGTGGAGGCCTATAATGAGATGGAGAGCCTTGTTAAGAACCATCCGCGGCTGCTTTTGAAGCCGTTCATGCATAAAATGGATCTGGCATATGCAGCTGCAGACCTAGTCGTTTCACGAGCTGGTGCAATGACTTGTTATGAGATCTTGGCAACTGGGAAGCCTTCCATTCTGATACCATCACCAGATGCTGATGAAGGACATCAATTCAAAAATGCCTCTTTGATGGCAGACTTGGCGGGTGCAAGGGTTATAACTGAAGATGAACTTGATTCGACAACACTTGGAAATGCAATAGAAGAGATAGTAGGGGATGAGAGTAAAATGGCAGATATGTCCGAGAGGGCTCTGAAAGCTGCAAACGTTAATGCCTCTGAAGAGATTGCACATCACGTTCTTTCTCTAGTCAGCTTATCAAGAGCAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

429

Amino Acids

46.28

Weight (kDa)

7.16

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_28 PF03033 53 - 193 1.7e-30 Glycosyltransferase family 28 N-terminal domain
Glyco_tran_28_C PF04101 248 - 408 7e-36 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1109
Acc65I GGTACC 1 cut(s) 176
AccB1I GGYRCC 3 cut(s) 56, 176, 446
AccII CGCG 1 cut(s) 904
AclI AACGTT 1 cut(s) 1218
AclWI GGATC 2 cut(s) 422, 945
AcoI YGGCCR 2 cut(s) 198, 301
AcsI RAATTY 2 cut(s) 246, 799
AcuI CTGAAG 2 cut(s) 1134, 1251
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 178, 458
AfiI CCNNNNNNNGG 2 cut(s) 299, 716
AgsI TTSAA 6 cut(s) 64, 70, 515, 799, 916, 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 731, 763
AloI GAACNNNNNNTCC 2 cut(s) 821, 853
AluBI AGCT 7 cut(s) 220, 405, 505, 953, 977, 1211, 1266
AluI AGCT 7 cut(s) 220, 405, 505, 953, 977, 1211, 1266
Alw21I GWGCWC 1 cut(s) 222
AlwI GGATC 2 cut(s) 422, 945
AlwNI CAGNNNCTG 1 cut(s) 1046
AoxI GGCC 6 cut(s) 6, 184, 198, 285, 301, 864
ApeKI GCWGC 4 cut(s) 907, 950, 953, 1211
ApoI RAATTY 2 cut(s) 246, 799
Asp700I GAANNNNTTC 1 cut(s) 920
Asp718I GGTACC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 490
AsuC2I CCSGG 3 cut(s) 197, 344, 534
AsuHPI GGTGA 5 cut(s) 8, 27, 67, 345, 1029
BanI GGYRCC 3 cut(s) 56, 176, 446
BanII GRGCYC 2 cut(s) 222, 1204
BauI CACGAG 1 cut(s) 972
BbsI GAAGAC 3 cut(s) 154, 358, 837
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 2 cut(s) 491, 567
BbvI GCAGC 4 cut(s) 894, 940, 962, 1198
BccI CCATC 6 cut(s) 296, 788, 871, 906, 1042, 1075
BceAI ACGGC 4 cut(s) 119, 185, 302, 904
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 3 cut(s) 197, 344, 534
BfaI CTAG 2 cut(s) 962, 1259
BfmI CTRYAG 1 cut(s) 954
BfoI RGCGCY 1 cut(s) 491
BglII AGATCT 1 cut(s) 999
Bme1390I CCNGG 3 cut(s) 197, 344, 534
BmiI GGNNCC 4 cut(s) 58, 178, 448, 647
BmrFI CCNGG 3 cut(s) 197, 344, 534
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 1 cut(s) 1033
BmuI ACTGGG 1 cut(s) 1020
BpiI GAAGAC 3 cut(s) 154, 358, 837
BpmI CTGGAG 2 cut(s) 421, 876
Bpu10I CCTNAGC 2 cut(s) 491, 567
BpuMI CCSGG 3 cut(s) 197, 344, 534
BsaAI YACGTR 1 cut(s) 460
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 533, 902
BsaWI WCCGGW 2 cut(s) 179, 469
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 716
Bse118I RCCGGY 3 cut(s) 170, 299, 449
Bse1I ACTGG 2 cut(s) 859, 1015
Bse3DI GCAATG 2 cut(s) 477, 990
BseDI CCNNGG 2 cut(s) 533, 902
BseGI GGATG 4 cut(s) 288, 739, 898, 1174
BseLI CCNNNNNNNGG 2 cut(s) 299, 716
BseMI GCAATG 2 cut(s) 477, 990
BseMII CTCAG 2 cut(s) 482, 558
BseNI ACTGG 2 cut(s) 859, 1015
BseX3I CGGCCG 1 cut(s) 198
BseXI GCAGC 4 cut(s) 894, 940, 962, 1198
Bsh1236I CGCG 1 cut(s) 904
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 6 cut(s) 8, 186, 200, 287, 303, 866
BshNI GGYRCC 3 cut(s) 56, 176, 446
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 8 cut(s) 171, 180, 197, 300, 344, 450, 470, 533
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 299, 716
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 6 cut(s) 8, 186, 200, 287, 303, 866
Bsp1286I GDGCHC 2 cut(s) 222, 1204
Bsp143I GATC 6 cut(s) 384, 393, 427, 441, 937, 999
BspANI GGCC 6 cut(s) 8, 186, 200, 287, 303, 866
BspCNI CTCAG 2 cut(s) 483, 559
BspFNI CGCG 1 cut(s) 904
BspLI GGNNCC 4 cut(s) 58, 178, 448, 647
BspMAI CTGCAG 1 cut(s) 958
BspPI GGATC 2 cut(s) 422, 945
BspT107I GGYRCC 3 cut(s) 56, 176, 446
BsrDI GCAATG 2 cut(s) 477, 990
BsrFI RCCGGY 3 cut(s) 170, 299, 449
BsrI ACTGG 2 cut(s) 859, 1015
BssAI RCCGGY 3 cut(s) 170, 299, 449
BssECI CCNNGG 2 cut(s) 533, 902
BssMI GATC 6 cut(s) 384, 393, 427, 441, 937, 999
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 972
Bst2BI CACGAG 1 cut(s) 972
Bst6I CTCTTC 2 cut(s) 1149, 1227
BstACI GRCGYC 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 491, 567, 681
BstDSI CCRYGG 1 cut(s) 902
BstEII GGTNACC 1 cut(s) 73
BstF5I GGATG 4 cut(s) 288, 739, 898, 1174
BstFNI CGCG 1 cut(s) 904
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 6 cut(s) 387, 396, 430, 444, 940, 1002
BstMBI GATC 6 cut(s) 384, 393, 427, 441, 937, 999
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 8 cut(s) 279, 323, 751, 916, 925, 950, 1091, 1208
BstPI GGTNACC 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 195, 342, 532
BstSFI CTRYAG 1 cut(s) 954
BstSNI TACGTA 1 cut(s) 460
BstUI CGCG 1 cut(s) 904
BstV1I GCAGC 4 cut(s) 894, 940, 962, 1198
BstV2I GAAGAC 3 cut(s) 154, 358, 837
BstX2I RGATCY 2 cut(s) 937, 999
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 2 cut(s) 937, 999
BstZI CGGCCG 1 cut(s) 198
BsuRI GGCC 6 cut(s) 8, 186, 200, 287, 303, 866
BtgI CCRYGG 1 cut(s) 902
BtsCI GGATG 4 cut(s) 288, 739, 898, 1174
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 1046
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 3 cut(s) 170, 299, 449
Cfr42I CCGCGG 1 cut(s) 905
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 177, 457
CviAII CATG 2 cut(s) 274, 925
CviQI GTAC 2 cut(s) 177, 457
DdeI CTNAG 3 cut(s) 491, 567, 681
DpnI GATC 6 cut(s) 386, 395, 429, 443, 939, 1001
DpnII GATC 6 cut(s) 384, 393, 427, 441, 937, 999
EaeI YGGCCR 2 cut(s) 198, 301
EagI CGGCCG 1 cut(s) 198
Eam1104I CTCTTC 2 cut(s) 1149, 1227
EarI CTCTTC 2 cut(s) 1149, 1227
Ecl136II GAGCTC 1 cut(s) 220
EclXI CGGCCG 1 cut(s) 198
Eco105I TACGTA 1 cut(s) 460
Eco147I AGGCCT 1 cut(s) 866
Eco24I GRGCYC 2 cut(s) 222, 1204
Eco52I CGGCCG 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 1134, 1251
Eco91I GGTNACC 1 cut(s) 73
EcoICRI GAGCTC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 930
EcoT38I GRGCYC 2 cut(s) 222, 1204
FaeI CATG 2 cut(s) 277, 928
FalI AAGNNNNNCTT 4 cut(s) 818, 850, 1107, 1139
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 273, 924
FauI CCCGC 3 cut(s) 331, 446, 1087
FauNDI CATATG 2 cut(s) 845, 946
FbaI TGATCA 1 cut(s) 384
FokI GGATG 4 cut(s) 275, 746, 885, 1181
FriOI GRGCYC 2 cut(s) 222, 1204
FspBI CTAG 2 cut(s) 962, 1259
GlaI GCGC 1 cut(s) 489
GsuI CTGGAG 2 cut(s) 421, 876
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 6 cut(s) 8, 186, 200, 287, 303, 866
HapII CCGG 8 cut(s) 171, 180, 197, 300, 344, 450, 470, 533
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 277, 928
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 4 cut(s) 112, 498, 511, 1127
HpaII CCGG 8 cut(s) 171, 180, 197, 300, 344, 450, 470, 533
HphI GGTGA 5 cut(s) 8, 27, 67, 345, 1029
Hpy188I TCNGA 5 cut(s) 813, 1029, 1195, 1206, 1231
Hpy188III TCNNGA 4 cut(s) 400, 515, 972, 1272
Hpy99I CGWCG 3 cut(s) 134, 206, 218
HpyAV CCTTC 7 cut(s) 19, 34, 42, 733, 820, 1029, 1046
HpyCH4IV ACGT 4 cut(s) 363, 459, 1218, 1248
HpyCH4V TGCA 9 cut(s) 337, 928, 950, 956, 983, 1100, 1148, 1214, 1241
HpyF10VI GCNNNNNNNGC 8 cut(s) 279, 323, 751, 916, 925, 950, 1091, 1208
HpyF3I CTNAG 3 cut(s) 491, 567, 681
HpySE526I ACGT 4 cut(s) 363, 459, 1218, 1248
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 277, 928
HspAI GCGC 1 cut(s) 488
KpnI GGTACC 1 cut(s) 180
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 384
KspI CCGCGG 1 cut(s) 905
Kzo9I GATC 6 cut(s) 384, 393, 427, 441, 937, 999
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 4 cut(s) 894, 940, 962, 1198
LweI GCATC 1 cut(s) 1033
MaeI CTAG 2 cut(s) 962, 1259
MaeII ACGT 4 cut(s) 363, 459, 1218, 1248
MaeIII GTNAC 2 cut(s) 73, 351
MalI GATC 6 cut(s) 386, 395, 429, 443, 939, 1001
MboI GATC 6 cut(s) 384, 393, 427, 441, 937, 999
MboII GAAGA 8 cut(s) 154, 247, 358, 637, 842, 1127, 1166, 1244
MfeI CAATTG 1 cut(s) 544
MflI RGATCY 2 cut(s) 937, 999
MhlI GDGCHC 2 cut(s) 222, 1204
MluCI AATT 6 cut(s) 246, 413, 544, 589, 799, 1061
MlyI GAGTC 2 cut(s) 106, 507
MmeI TCCRAC 1 cut(s) 801
Mph1103I ATGCAT 1 cut(s) 930
MroNI GCCGGC 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 3 cut(s) 588, 891, 1221
MspA1I CMGCKG 2 cut(s) 904, 953
MspI CCGG 8 cut(s) 171, 180, 197, 300, 344, 450, 470, 533
MspR9I CCNGG 3 cut(s) 197, 344, 534
MunI CAATTG 1 cut(s) 544
Mva1269I GAATGC 1 cut(s) 529
MvnI CGCG 1 cut(s) 904
MwoI GCNNNNNNNGC 8 cut(s) 279, 323, 751, 916, 925, 950, 1091, 1208
NaeI GCCGGC 1 cut(s) 301
NciI CCSGG 3 cut(s) 197, 344, 534
NdeI CATATG 2 cut(s) 845, 946
NdeII GATC 6 cut(s) 384, 393, 427, 441, 937, 999
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 2 cut(s) 277, 928
NlaIV GGNNCC 4 cut(s) 58, 178, 448, 647
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 73, 351
NsiI ATGCAT 1 cut(s) 930
PceI AGGCCT 1 cut(s) 866
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 303
PctI GAATGC 1 cut(s) 529
PdiI GCCGGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 511, 1127
PflFI GACNNNGTC 1 cut(s) 962
PleI GAGTC 2 cut(s) 106, 506
PpsI GAGTC 2 cut(s) 106, 506
Ppu21I YACGTR 1 cut(s) 460
PsiI TTATAA 1 cut(s) 1109
Psp124BI GAGCTC 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 1218
PspEI GGTNACC 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 58, 178, 448, 647
PstI CTGCAG 1 cut(s) 958
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 2 cut(s) 937, 999
PsyI GACNNNGTC 1 cut(s) 962
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 2 cut(s) 178, 458
RsaNI GTAC 2 cut(s) 177, 457
SacI GAGCTC 1 cut(s) 222
SacII CCGCGG 1 cut(s) 905
SaqAI TTAA 3 cut(s) 588, 891, 1221
Sau3AI GATC 6 cut(s) 384, 393, 427, 441, 937, 999
SchI GAGTC 2 cut(s) 106, 507
ScrFI CCNGG 3 cut(s) 197, 344, 534
SduI GDGCHC 2 cut(s) 222, 1204
SfaNI GCATC 1 cut(s) 1033
SfcI CTRYAG 1 cut(s) 954
Sfr303I CCGCGG 1 cut(s) 905
SgrAI CRCCGGYG 2 cut(s) 170, 449
SgrBI CCGCGG 1 cut(s) 905
SnaBI TACGTA 1 cut(s) 460
Sse9I AATT 6 cut(s) 246, 413, 544, 589, 799, 1061
SseBI AGGCCT 1 cut(s) 866
SspI AATATT 1 cut(s) 787
SspMI CTAG 2 cut(s) 962, 1259
SstI GAGCTC 1 cut(s) 222
StuI AGGCCT 1 cut(s) 866
StyD4I CCNGG 3 cut(s) 195, 342, 532
TaiI ACGT 4 cut(s) 366, 462, 1221, 1251
TaqI TCGA 3 cut(s) 144, 392, 1130
TasI AATT 6 cut(s) 246, 413, 544, 589, 799, 1061
TauI GCSGC 9 cut(s) 8, 170, 317, 329, 485, 488, 692, 720, 907
TfiI GAWTC 2 cut(s) 511, 1127
Tru1I TTAA 3 cut(s) 588, 891, 1221
Tru9I TTAA 3 cut(s) 588, 891, 1221
TseFI GTSAC 2 cut(s) 73, 351
TseI GCWGC 4 cut(s) 907, 950, 953, 1211
Tsp45I GTSAC 2 cut(s) 73, 351
TspDTI ATGAA 4 cut(s) 829, 913, 1065, 1134
TspGWI ACGGA 1 cut(s) 143
Tth111I GACNNNGTC 1 cut(s) 962
XapI RAATTY 2 cut(s) 246, 799
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 2 cut(s) 962, 1259
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.